BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31425.1
Length=736
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900951 jgi|Araly1|900951|Al_scaffold_0004_1601 776 0.0
> Ahg900951 jgi|Araly1|900951|Al_scaffold_0004_1601
Length=564
Score = 776 bits (420), Expect = 0.0
Identities = 521/569 (92%), Gaps = 10/569 (2%)
Strand=Plus/Plus
Query 36 ATGGCCAAAATGAC-AATAACACACATGAAGTTTCTTCAACTGTTGTTATCT-TTAGTGC 93
|||||||||||| | ||||| ||||| || |||||| | ||||||||| | |||||||
Sbjct 1 ATGGCCAAAATG-CTAATAAAACACAAAAAAATTCTTCCATTGTTGTTAT-TGTTAGTGC 58
Query 94 TCTTTGTATTCTCAATGTCAAATGCAATGCCAATCTCAGACGTACATAATTTTTGCAAGG 153
|||||| |||| ||||||||||| ||||||||||| |||||||||| |||||||||||||
Sbjct 59 TCTTTGCATTCCCAATGTCAAATACAATGCCAATCACAGACGTACACAATTTTTGCAAGG 118
Query 154 AAACGTTTGAAGTAGAATTCTGCATGAAATACATTGGGTCGGACCAACGTCTCGTAGCCG 213
|||||||||||||||| |||||| |||||||||||||||||||||||||| | |||||||
Sbjct 119 AAACGTTTGAAGTAGATTTCTGCCTGAAATACATTGGGTCGGACCAACGTATGGTAGCCG 178
Query 214 CACGCGACTTCAGTGACATGCTTTTAATTCCGATATCTGAGACTCAAATTCAAGTGACCA 273
|||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||
Sbjct 179 CACGCGACTTCAGTGACATGTTTTTAATTGCGATATCTGAGACCCAAATTCAAGTGACCA 238
Query 274 ATGCAATCACACAAATCAACAATATCCGCCAAAGGTTT-AATGA-CACGCTTGGAAAGAA 331
||||||| ||||| ||||||||||||||||||| |||| ||||| | ||||||| |||||
Sbjct 239 ATGCAATTACACATATCAACAATATCCGCCAAA-GTTTAAATGATC-CGCTTGGGAAGAA 296
Query 332 TCGGATCGCTCTATGCGAGGAAAAATACGAGAG-CGCGGGCACTAGTTTTCACAAGGCTT 390
|||||||| | |||||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 297 TCGGATCGGTGTATGCGAGGAAAAATACGAG-GTCGCGGCCACTAGTTTTCACAAGGCTT 355
Query 391 GGGAAGTCGGACAGAAAAAGTCAAATTCATCGACGGACCATATGGAAATAACCCGAAACA 450
||||||| ||||||||||||||||||||||| ||||||| |||||| |||||| ||| ||
Sbjct 356 GGGAAGTTGGACAGAAAAAGTCAAATTCATCAACGGACCGTATGGAGATAACCAGAAGCA 415
Query 451 CGCAAGCTGGCTTTGATGCTGTGTGCGAGTGCGAAGACGAATGGGCAAAGCATGGTCCGA 510
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 416 CGCAAGCTGGCTTTGATGCTGTGTGTGAGTGCGAAGACGAATGGTCAAAGCATGGTCCGA 475
Query 511 AACAAGAGTCTCCTCTCACTTTCTATTACCATAACGTTCTGAAACTATGCCAAATTACTC 570
||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 476 GACAAGAGTCTCCTCTCACTTTCTATTACCATAATGTTCTAAAACTATGTCAAATTACTC 535
Query 571 GTCTTATTATCAGCAAGCTTTAGGCTTAA 599
|||||||||||||||||||| ||||||||
Sbjct 536 GTCTTATTATCAGCAAGCTTGAGGCTTAA 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27105393987
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5