BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31430.1
Length=892
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344912 jgi|Araly1|344912|fgenesh1_pg.C_scaffold_4001254 815 0.0
> Ahg344912 jgi|Araly1|344912|fgenesh1_pg.C_scaffold_4001254
Length=540
Score = 815 bits (441), Expect = 0.0
Identities = 510/543 (94%), Gaps = 6/543 (1%)
Strand=Plus/Plus
Query 102 ATGGCCACAATGCTAATAAACCACATGCT-TTTCCTT-ACGTCGTTGTTAATAG-TCGTG 158
||||||||||||||||||||||||||| | ||| ||| ||||||||| | || | ||| |
Sbjct 1 ATGGCCACAATGCTAATAAACCACATG-TGTTT-CTTAACGTCGTTGAT-ATTGATCGCG 57
Query 159 TTTCCAGTAGCAAACGCGATTCCAGCCAGAGACATTGACAAGTTATGCAAAGAGACAACT 218
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||
Sbjct 58 TTTCCAGTAGCAAACGCTATTCCAGCCAGAGACATTGACAAGCTATGCAAAGAGACTACT 117
Query 219 GATGTGCCCTTCTGCCTCAAATACCTTGGGACAGATCCACGTATACCAGCCGCACGTGAC 278
|||||||||||||||||| ||||| ||||| | |||||||| ||||||||||||||||||
Sbjct 118 GATGTGCCCTTCTGCCTCCAATACATTGGGTCGGATCCACGAATACCAGCCGCACGTGAC 177
Query 279 CTCACTGACGTGCTTTTAATTGCGATAACGCAGTCAAAAATGCAAGTGGATGACGCAACC 338
|||| |||||| |||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 178 CTCAGTGACGTTCTTTTAATCGCGATAACGCACTCAAAAATGCAAGTGGATGATGCAACC 237
Query 339 ACTCATATTGATAGAGTCCGTCGAAAGTTCAATGGTCCTCATGGGAGGAGACGGATCGAG 398
||||||||||| ||||||||||||||||||| |||||| |||||| |||||||||||||
Sbjct 238 ACTCATATTGACAGAGTCCGTCGAAAGTTCAGTGGTCCGAATGGGAAGAGACGGATCGAG 297
Query 399 GTTTGCAAGACGAATTACGGAATTGCTTCGGCAAGGTTTCACACAGCTTGGGAACTTGGA 458
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 298 GTTTGCAAGACGAATTACGGAATAGCTTCGGCTAGGTTTCACACTGCTTGGGAACTTGGA 357
Query 459 CTTCAAAAATCGTTTTGGGACGTGGAAAAACTGGCAAGGATTGGCACCAACGCTGTGATC 518
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 358 CTTCAAAAATCGTTTTGGGATGTGGAAAAACTGGCAAGGATTGGCACCAACGCTGTGATC 417
Query 519 GACTGCGAAAACGTATGGAGAAGGGATGGTCCGATACAAACGTCTCCTCTCACTTTCTAT 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GACTGCGAAAACGTATGGAGAAGGGATGGTCCGATACAAACGTCTCCTCTCACTTTCTAT 477
Query 579 AACATGAATGTTTTCAAGCTTTCTGGAATCATTCTTCTTATTTTCAACAAGCTTGTGACC 638
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 478 AACATGAATGTTTTCAAGCTATCTGGAATCATTCTTCTTATTTTCGACAAGCTTGTGACC 537
Query 639 TAA 641
|||
Sbjct 538 TAA 540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33052569039
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5