BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G31430.1 Length=892 Score E Sequences producing significant alignments: (Bits) Value Ahg344912 jgi|Araly1|344912|fgenesh1_pg.C_scaffold_4001254 815 0.0 > Ahg344912 jgi|Araly1|344912|fgenesh1_pg.C_scaffold_4001254 Length=540 Score = 815 bits (441), Expect = 0.0 Identities = 510/543 (94%), Gaps = 6/543 (1%) Strand=Plus/Plus Query 102 ATGGCCACAATGCTAATAAACCACATGCT-TTTCCTT-ACGTCGTTGTTAATAG-TCGTG 158 ||||||||||||||||||||||||||| | ||| ||| ||||||||| | || | ||| | Sbjct 1 ATGGCCACAATGCTAATAAACCACATG-TGTTT-CTTAACGTCGTTGAT-ATTGATCGCG 57 Query 159 TTTCCAGTAGCAAACGCGATTCCAGCCAGAGACATTGACAAGTTATGCAAAGAGACAACT 218 ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||| Sbjct 58 TTTCCAGTAGCAAACGCTATTCCAGCCAGAGACATTGACAAGCTATGCAAAGAGACTACT 117 Query 219 GATGTGCCCTTCTGCCTCAAATACCTTGGGACAGATCCACGTATACCAGCCGCACGTGAC 278 |||||||||||||||||| ||||| ||||| | |||||||| |||||||||||||||||| Sbjct 118 GATGTGCCCTTCTGCCTCCAATACATTGGGTCGGATCCACGAATACCAGCCGCACGTGAC 177 Query 279 CTCACTGACGTGCTTTTAATTGCGATAACGCAGTCAAAAATGCAAGTGGATGACGCAACC 338 |||| |||||| |||||||| ||||||||||| |||||||||||||||||||| |||||| Sbjct 178 CTCAGTGACGTTCTTTTAATCGCGATAACGCACTCAAAAATGCAAGTGGATGATGCAACC 237 Query 339 ACTCATATTGATAGAGTCCGTCGAAAGTTCAATGGTCCTCATGGGAGGAGACGGATCGAG 398 ||||||||||| ||||||||||||||||||| |||||| |||||| ||||||||||||| Sbjct 238 ACTCATATTGACAGAGTCCGTCGAAAGTTCAGTGGTCCGAATGGGAAGAGACGGATCGAG 297 Query 399 GTTTGCAAGACGAATTACGGAATTGCTTCGGCAAGGTTTCACACAGCTTGGGAACTTGGA 458 ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| Sbjct 298 GTTTGCAAGACGAATTACGGAATAGCTTCGGCTAGGTTTCACACTGCTTGGGAACTTGGA 357 Query 459 CTTCAAAAATCGTTTTGGGACGTGGAAAAACTGGCAAGGATTGGCACCAACGCTGTGATC 518 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 358 CTTCAAAAATCGTTTTGGGATGTGGAAAAACTGGCAAGGATTGGCACCAACGCTGTGATC 417 Query 519 GACTGCGAAAACGTATGGAGAAGGGATGGTCCGATACAAACGTCTCCTCTCACTTTCTAT 578 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 GACTGCGAAAACGTATGGAGAAGGGATGGTCCGATACAAACGTCTCCTCTCACTTTCTAT 477 Query 579 AACATGAATGTTTTCAAGCTTTCTGGAATCATTCTTCTTATTTTCAACAAGCTTGTGACC 638 |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 478 AACATGAATGTTTTCAAGCTATCTGGAATCATTCTTCTTATTTTCGACAAGCTTGTGACC 537 Query 639 TAA 641 ||| Sbjct 538 TAA 540 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33052569039 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5