BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31432.1
Length=489
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312350 jgi|Araly1|312350|fgenesh1_pm.C_scaffold_1001130 660 0.0
Ahg933692 jgi|Araly1|933692|scaffold_401680.1 195 3e-49
> Ahg312350 jgi|Araly1|312350|fgenesh1_pm.C_scaffold_1001130
Length=489
Score = 660 bits (357), Expect = 0.0
Identities = 449/493 (91%), Gaps = 8/493 (2%)
Strand=Plus/Plus
Query 1 ATGCCAACCAAAGACGTATACAGTCTTTGCAAGGAGTCGTCTGAAGTAGATTTCTGCATG 60
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1 ATGCCAATCAAAGACGTATACAGTCTTTGCAAGGAATCGTCTGAAGTAGATTTCTGCCTG 60
Query 61 AAAAACATTGGGTCGGACAAACGTATAGTAGCCGCACGCGACTTCTATGACATATTTTTA 120
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 AAATACATTGGGTCGGACAAACGTATAGTAGCCGCACGCGACTTCTATGACGTATTTTTA 120
Query 121 ATCGCGGTATCAAGGACCCAAATTATAGTTGACACTGGACTCTTGGTTATCAGCGGTGAA 180
|||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 ATCGCGATATCTAGGACCCAAATTATAGTGGACACTGGACTCTTGGTTATCAGCGGTGAA 180
Query 181 GATACCCGTAAAAACTATAATGAACCATTTGAGAAGAATTGGGTCGCTGTATGCGAGGAA 240
||||||||||||| ||||||| ||||||||||||||||| ||||| |||||| ||| ||
Sbjct 181 GATACCCGTAAAATTTATAATGGACCATTTGAGAAGAATTTGGTCGTTGTATGTGAGAAA 240
Query 241 AAATACAAGATCGCGGTTAATAGTTTTCAGAAGGCTCGAGTAGTTGGAGAGAAAAAGTCA 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAATACAAGATCGCGGTCAATAGTTTTCAGAAGGCTCGAGTAGTTGGAGAGAAAAAGTCA 300
Query 301 AAGTCATTAACGGACCGTATGGAAATGTCCCAACTCACTGAAGCTGGCTTTGAGGCTGTG 360
||||||||| ||||||||| ||||||||||||| ||| |||||||||||||||||||||
Sbjct 301 AAGTCATTAGCGGACCGTACCGAAATGTCCCAACGCACGGAAGCTGGCTTTGAGGCTGTG 360
Query 361 CTCGATTGTC-AAGACGAATGGACAAA-GATTCTAG-AACATGAACAAGCGTGTCCTTTT 417
|| ||||| | |||||| ||||||| | ||| | || ||| | || || || |||| ||
Sbjct 361 CTTGATTG-CGAAGACGCATGGACATATGAT-C-AGGAACGTCCACGAGTGTCTCCTGTT 417
Query 418 -TCTTACTGGTACCATAAAGTTCGAAAACTAGTTAAAATTACTCGTGTTATTGTCAAAAG 476
| ||||| ||||||||||||||||||||| ||||||| |||||||||||| |||||||
Sbjct 418 GT-TTACTATTACCATAAAGTTCGAAAACTAATTAAAATCACTCGTGTTATTATCAAAAG 476
Query 477 GCTTAACGCCTAG 489
|||||||||||||
Sbjct 477 GCTTAACGCCTAG 489
> Ahg933692 jgi|Araly1|933692|scaffold_401680.1
Length=206
Score = 195 bits (105), Expect = 3e-49
Identities = 162/189 (86%), Gaps = 6/189 (3%)
Strand=Plus/Plus
Query 304 TCATTAACGGACCGTATGGAAATGTCCCAACTCACTGAAGCTGGCTTTGAGGCTGTGCTC 363
|||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 TCATTAACAGACCGTACGGAAATGTCCCAACTCACGGAAGCTGGCTTTGAGGCTGTGCTC 60
Query 364 GATTGTCAA-GACGAATGGACAAAG-ATTCTAGAA-CATGAACAAGCGTGTCCTTTTTCT 420
||||| | | ||||||||||||||| || || || ||| ||||| || ||||||| ||
Sbjct 61 GATTG-CGACGACGAATGGACAAAGGATA-TA-AATCATTCACAAGTGTCTCCTTTTGCT 117
Query 421 TACTGGTACCATAAAGTTCGAAAACTAGTTAAAATTACTCGTGTTATTGTCAAAAGGCTT 480
|||||||||| | |||||||| ||| ||||||||| |||||||||| | | |||||||
Sbjct 118 GGCTGGTACCATGATGTTCGAAACCTAATTAAAATTATTCGTGTTATTATTAGAAGGCTT 177
Query 481 AACGCCTAG 489
||||| |||
Sbjct 178 AACGCTTAG 186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17742348885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5