BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31440.1
Length=1087
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933693 jgi|Araly1|933693|scaffold_401681.1 1341 0.0
> Ahg933693 jgi|Araly1|933693|scaffold_401681.1
Length=794
Score = 1341 bits (726), Expect = 0.0
Identities = 762/780 (98%), Gaps = 0/780 (0%)
Strand=Plus/Plus
Query 144 CCGGTGTGGCATGACGGTCGCGGCGGGTATCGGCTACGCGCTGGTGGCTTTAGGACCGTC 203
|||||| |||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 11 CCGGTGCGGCATGACGGTCGCGGCGGGGATCGGCTATGCGCTGGTGGCTTTGGGACCGTC 70
Query 204 TCTTTCACTTTTCGTCTCCGTCATCTCCAGAAAGCCCTTTCTCATCCTCACTGTTCTCTC 263
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 71 TCTTTCACTTTTCGTCTCTGTCATCTCCAGAAAGCCCTTTCTCATCCTCACTGTTCTCTC 130
Query 264 CAGTACGTTGCTGTGGCTTGTGAGTCTGATCATCTTGTCGGGATTATGGAGACCATTTCT 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 CAGTACGTTGCTGTGGCTTGTGAGTCTGATCATCTTGTCGGGATTATGGAGACCATTTCT 190
Query 324 TCCTCTCAAAGCCAATGTGTGGTGGCCTTATGCTTTACTTGTTATCACCTCTGTTTGTTT 383
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 191 TCCTCTCAAAGCCAATGTGTGGTGGCCTTATGCTTTACTGGTTATCACCTCTGTTTGTTT 250
Query 384 CCAGGAAGGCCTTCGCTTTCTCTTCTGGAAGGTTTACAAGAGGCTTGAGGATGTCTTGGA 443
||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 251 CCAGGAAGGTCTTCGTTTTCTTTTCTGGAAGGTTTACAAGAGGCTTGAGGATGTCTTGGA 310
Query 444 TTCCTTTGCGGATCGTATCTCAAGGCCCCGCCTGTTTCTCACTGATAAGCTGCAGATTGC 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 TTCCTTTGCGGATCGTATCTCAAGGCCCCGCCTGTTTCTCACTGATAAGCTGCAGATTGC 370
Query 504 TCTAGCTGGTGGTTTAGGTCATGGTGTGGCGCATGCTGTATTCTTTTGTTTGAGCCTCTT 563
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 371 TCTAGCTGGTGGCTTAGGTCATGGTGTGGCGCATGCTGTCTTCTTTTGTTTGAGCCTCTT 430
Query 564 AACTCCAGCGTTTGGTCCAGCCACATTCTATGTCGAAAGATGTTCGAAGGTGCCATTTTT 623
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 431 AACTCCAGCGTTTGGTCCGGCCACATTCTATGTCGAAAGATGTTCGAAGGTGCCATTTTT 490
Query 624 TCTCATCTCTGCAATCATTGCTCTTGCATTTGTTACGATCCACACATTCTCGATGGTCAT 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 TCTCATCTCTGCAATCATTGCTCTTGCATTTGTTACGATCCACACATTCTCGATGGTCAT 550
Query 684 TGCTTTCGAAGGGTATGCAAAAGGGAACAAAGTAGATCAAATAATAGTTCCAGTCATACA 743
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 551 TGCTTTCGAAGGGTATGCAAAAGGGAACAAAGTAGATCAAGTAATAGTTCCAGTCATACA 610
Query 744 CCTTACTGCTGGAATGTTGACATTGGTGAATTTTGCATCGGAAGGTTGTGTGATCGGGGT 803
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 611 CCTTGCTGCTGGAATGTTGACATTGGTGAATTTTGCATCGGAAGGTTGTGTGATCGGTGT 670
Query 804 TCCTCTTCTTTACCTTGTGGCATCTTTGACTCTTGTGCATTGTGGAAAAATGGTTTGGCA 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 TCCTCTTCTTTACCTTGTGGCATCTTTGACTCTTGTGCATTGTGGAAAAATGGTTTGGCA 730
Query 864 AAGGTTGTTGGAAAGCCGGAACCAAAGCAGCGCCTCACGGTAATCTGGCCTCGGTCTCAG 923
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||
Sbjct 731 AAGGTTGTTGGAAAGCCGGAACCAAAGCAGCGCTTCACGGTAATCTGGCCTTGGTCCCAG 790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40486537854
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5