BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31450.1
Length=1369
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900954 jgi|Araly1|900954|Al_scaffold_0004_1604 1668 0.0
> Ahg900954 jgi|Araly1|900954|Al_scaffold_0004_1604
Length=1065
Score = 1668 bits (903), Expect = 0.0
Identities = 1019/1073 (95%), Gaps = 16/1073 (1%)
Strand=Plus/Plus
Query 119 ATGAGTCGCCAAATTCACGGAGCTGTA---TCTTCTTCT-AAGCACATCTCCTTAAAAAC 174
|||| |||||||||||||||||||||| ||||||||| || || ||||||| ||||||
Sbjct 1 ATGAATCGCCAAATTCACGGAGCTGTATCTTCTTCTTCTAAACCA-ATCTCCTCAAAAAC 59
Query 175 CCAACACCCCCTCTCAGATTCCAACTCAGAACTAGCCTATGGAGCTTCTGGGTCGGAGAC 234
|||||| || ||||| |||||||||| | |||| |||||||||||||||||| |||
Sbjct 60 CCAACATCCTCTCTCCGATTCCAACT-----C-AGCCAATGGAGCTTCTGGGTCGGTGAC 113
Query 235 TCGAGTGTATACCCGGaaaaaaaGGCTAAAGCAGGAACCTTTTGAGCCTCTGGAGA-AAT 293
|||||||||||||||||| |||||||||||||||||| |||| ||||||||||||| ||
Sbjct 114 TCGAGTGTATACCCGGAAGAAAAGGCTAAAGCAGGAAGCTTTGGAGCCTCTGGAGATAA- 172
Query 294 ATTCCGGCAAAGGAGTCAATACCCACAAACTG-T--GTGGTTTACCCGATATAGAAGATT 350
|| ||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 173 ATCCCGGCAAAGGAGTCAATACCCACAAACAGCTACGTGGTTTACCCGATATAGAAGATT 232
Query 351 TTGCTTACAAAAAGACTATTGGATCTCCTTCATCTAGCAGGTCAACGGAAACTAGCATCA 410
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 233 TTGCTTACAAAAAGACTATTGGATCTCCTTCATCTAGGAGGTCAACGGAAACTAGCATCA 292
Query 411 CTGTGACTTCAGTCAAAACAGCAGGATATCCGCCTGAAAACTGGGTCGAAGTGCTCGAGG 470
|||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||
Sbjct 293 CTGTGACTTCAGTCAAAACAATAGGAAATCCGCCTGAAAACTGGGTAAAAGTGCTCGAGG 352
Query 471 GTATTCGTCAAATGAGATCTTCTGAAGATGCACCAGTTGATTCTATGGGATGTGATAAAG 530
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 353 GTATTCGTCAAATGAGATCTTCTGAAGATGCACCAGTTGATTCTATGGGATGTGATAAGG 412
Query 531 CCGGAAGCTTTCTACCTCCCACGGAAAGAAGATTTGCTGTCTTGCTAGGAGCACTTCTTT 590
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 413 CCGGAAGCTTTCTACCTCCTACGGAAAGAAGATTTGCTGTCTTGCTAGGAGCACTTCTTT 472
Query 591 CAAGTCAGACAAAAGATCAAGTTAATAACGCGGCAATACATCGTCTTCATCAAAACGGCC 650
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 473 CAAGTCAGACAAAAGATCAAGTTAATAACGCGGCAATACATCGTCTTCATCAAAACAGCC 532
Query 651 TTCTTACTCCCGAAGCGGTTGACAAAGCTGATGAATCAACCATAAAAGAATTGATCTATC 710
||||||| |||||||| ||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 533 TTCTTACGCCCGAAGCCGTTGACAAAGCTGATGAATCAACTATAAGAGAATTGATCTATC 592
Query 711 CGGTTGGATTTTATACAAGGAAGGCTACCTATATGAAGAAAATAGCTAGAATTTGTCTAG 770
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 593 CGGTTGGATTTTATACAAGGAAGGCTACATATATGAAGAAAATAGCTAGAATTTGCCTAG 652
Query 771 TGAAATATGACGGAGACATTCCAAGCTCTTTGGACGACCTGCTGTCTCTTCCAGGGATTG 830
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TGAAATATAACGGAGACATTCCAAGCTCTTTGGACGACCTGCTGTCTCTTCCAGGGATTG 712
Query 831 GTCCCAAGATGGCCCATCTGATTCTGCATATAGCATGGAATGATGTCCAAGGCATATGTG 890
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 713 GTCCGAAGATGGCCCATCTGATTCTGCATATAGCATGGAATGATGTCCAAGGTATATGTG 772
Query 891 TAGACACACATGTGCATCGCATTTGCAATCGACTTGGTTGGGTGTCTCGTCCAGGAACCA 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TAGACACACATGTGCATCGCATTTGCAATCGACTTGGTTGGGTGTCTCGTCCAGGAACCA 832
Query 951 AACAGAAAACTACATCTCCAGAGGAAACAAGAGTAGCTTTGCAACAATGGCTTCCAAAGG 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 AACAGAAAACTACATCTCCAGAGGAAACAAGAGTAGCTTTGCAACAATGGCTTCCAAAGG 892
Query 1011 AAGAATGGGTTGCCATTAACCCGCTTTTGGTGGGGTTTGGACAAATGATTTGCACACCAA 1070
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 893 AAGAATGGGTTGCCATTAACCCGCTTTTGGTGGGGTTTGGACAAACGATTTGCACACCAT 952
Query 1071 TAAGACCACGCTGCGAAGCCTGCAGTGTCAGTAAGCTTTGTCCTGCTGCATTCAAAGAAA 1130
||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||| |
Sbjct 953 TAAGACCTCGCTGCGAAGCTTGCAGTGTCACTAAGCTTTGTCCTGCTGCATTCAAAGAGA 1012
Query 1131 CATCAAGCCCATCTTCCAAGTTGAAGAAATCTAACCGAAGCAAAGAACCATGA 1183
||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1013 CATCAAGCCCATCTTCCAAATTGAAGAAATCTAACCGAAGCAAAGAACCATGA 1065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51237200448
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5