BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G31470.1 Length=1164 Score E Sequences producing significant alignments: (Bits) Value Ahg344998 jgi|Araly1|344998|fgenesh1_pg.C_scaffold_4001340 165 7e-40 Ahg496820 jgi|Araly1|496820|fgenesh2_kg.8__2636__AT5G65850.1 141 1e-32 Ahg939174 jgi|Araly1|939174|scaffold_503365.1 104 1e-21 Ahg480507 jgi|Araly1|480507|fgenesh2_kg.3__3208__AT2G19630.2 87.9 1e-16 Ahg936029 jgi|Araly1|936029|scaffold_500220.1 86.1 5e-16 Ahg936026 jgi|Araly1|936026|scaffold_500217.1 86.1 5e-16 Ahg923911 jgi|Araly1|923911|scaffold_105192.1 60.2 3e-08 Ahg931794 jgi|Araly1|931794|scaffold_304251.1 58.4 1e-07 > Ahg344998 jgi|Araly1|344998|fgenesh1_pg.C_scaffold_4001340 Length=606 Score = 165 bits (89), Expect = 7e-40 Identities = 374/506 (74%), Gaps = 41/506 (8%) Strand=Plus/Plus Query 73 ATCCCAATTGATCTCGTTATCGAGATATTCTCAAGGTCGCCTGTGAAGTCTATAGCAAGA 132 |||||| |||||||| || |||||||||| || |||| | | |||||||||||||||||| Sbjct 103 ATCCCAGTTGATCTCATTGTCGAGATATTATCTAGGTTGTCGGTGAAGTCTATAGCAAGA 162 Query 133 TGTCGTTGCGTATCAAAGCTTTGGGCCTCCATACTCCGCC-TACCCTATTTCACGGAGTT 191 |||||||||||||| ||||| ||| ||||| |||| |||| | || ||||||| ||||| Sbjct 163 TGTCGTTGCGTATCGAAGCTCTGGACCTCCGTACTTCGCCGT-CCAGATTTCACAGAGTT 221 Query 192 GTACTTGACCAA-ATCTTGTG-CTCGCCCG-AGGCTCTTGTTCGCCTGCCAAA-AACACA 247 || ||||| || ||||| || |||| ||| || | ||| |||||| ||||| || || Sbjct 222 GTTTTTGAC-AAGATCTT-TGGCTCGACCGCAGA-TATTGGTCGCCTACCAAACAA-ACG 277 Query 248 GAGAGTTGTTCTTCTTCTCGACACCTCAGCCTCATAA-TCCT--AA-TGAGAGCTCGTCT 303 |||| || ||||||| ||| |||||||||| || || | || ||| | ||||||| Sbjct 278 GAGAATTCTTCTTCTCCTCCTGGCCTCAGCCTCG-AAGTC-TGGAAGTGA-A-CTCGTCT 333 Query 304 CCTTTA-GCTGCCAGTTTTCATATGAAAATTCCCTTTGATGGTCGCTTTAATATTATCAG 362 || || | | || | || || | | |||||| ||||| || ||| ||| | | Sbjct 334 CCGGTAAG-TATCAATCATCTTAAGCGCCTCCCCTTTTCTGGTCCCTGTAAAATTCTTGG 392 Query 363 TCCTATCGGTGGCCTTG-TCTTTGTTA--GATATGAACAGATCTTAAAGGGAAGGAAAAC 419 || | || ||| ||| ||| | ||| || | || | | ||||||| ||||||| | Sbjct 393 TCTTGTCCAAGGC-TTGGTCTGTCTTATAGACA-GA-CGGTTCTTAAACGGAAGGA---C 446 Query 420 TCCAGAATT-TGTCTCGGCGATATGTAACCCTAGCACGGGACAATCCTTAACCTTA-CCA 477 |||| || | | | |||||||||||||||||| ||| |||||||| | ||| ||| Sbjct 447 G--AGAACGGTG-C-CAGTGATATGTAACCCTAGCACTGGAGAATCCTTATCTTTATCCA 502 Query 478 AAACCTAAGACAAGGAAGAGG-ATTTGGGGTACAAGCCATTTTGGGTATGATCCTATTGA 536 || ||||| |||| || | | | || |||| ||||||||||||||| ||||| Sbjct 503 CAATG-AAGACGAGGA-GATGCAAC-GT--TATAAGCTTTTTTGGGTATGATCCGATTGA 557 Query 537 GAAACAATTCAAGGTATTGTCAATGA 562 |||||| | |||| | ||||| |||| Sbjct 558 GAAACAGTACAAGATCTTGTCCATGA 583 > Ahg496820 jgi|Araly1|496820|fgenesh2_kg.8__2636__AT5G65850.1 Length=1179 Score = 141 bits (76), Expect = 1e-32 Identities = 444/613 (72%), Gaps = 59/613 (10%) Strand=Plus/Plus Query 586 GAGCATTATGTTCTGACATTAGGAACT-GAGAACCTCTCTTGGAGAAGGATCGAATGTTC 644 |||||| | ||||||||| |||||||| ||||| || || ||||||| ||| |||||||| Sbjct 568 GAGCATCAAGTTCTGACACTAGGAACTGGAGAA-CTGTCATGGAGAATGATTGAATGTTC 626 Query 645 TATACCCCATGTTCATGG-TTCTAAAGGGATATGCATCAATGGTGTTTTGTATTATCGAG 703 ||||| ||| ||| ||| || | | ||||||||||||||||||||||||||||| || Sbjct 627 CATACCTCATATTCCTGGATTGT-CTGAGATATGCATCAATGGTGTTTTGTATTATCCAG 685 Query 704 CAAAGGCTGACATGTTTTCAGGT-ACTTTA-ATGATAGTTTGCTTTGATGTTAGGTTTGA 761 | | | || ||| |||||| | || | || || |||||||| |||| ||||| || Sbjct 686 CGAT--C-GATTTGTCTTCAGGGGA-TT-ACATTATCGTTTGCTTCGATGCTAGGTCCGA 740 Query 762 GAAGTTCAGCTATATTAAAATCTTG-AA-AC--C-T-ACA--A-C--A--AC----T-CT 803 |||||| || | ||||| | || || || | | | | | | | | | | || Sbjct 741 GAAGTTTAGATTTATTACAGTCATGGAAGATTTCATTAAAGCAGCGCATGATGGAATTCT 800 Query 804 GATTAGCTACAACGGTAAATTGGCTTCACTAGTGTGGGAA-GGGC---CTA-GTT-ATAT 857 ||||| |||||| |||||||| |||||||| || | ||| ||| || ||| || Sbjct 801 GATTAACTACAATGGTAAATTAGCTTCACTTGTTTCTGAAAGGGGTTGCTTTGTTGATGG 860 Query 858 TTGTGG-AAAACGTTTTGAAATGTGGGTTTTAGGAGACCCCGAAAAACATGAATGGTTGA 916 || | ||||| | |||| |||||||| || ||| | ||||| || ||||||| || Sbjct 861 ACGTAGTAAAAC-TATTGAGTTGTGGGTTCTACAAGATGCTGAAAAGCAGGAATGGTCGA 919 Query 917 AGCATACT-TACGAATTGCGTC-CTCGGTGGCAGAATGTACTTGGAGAGGACTTG-TTAA 973 ||| || | |||| ||||| | || |||||||| || | ||||| | || | || | Sbjct 920 AGCTTA-TATACGTATTGCC-CGCTTGGTGGCAGGATATGGTTGGA-ACC-CTCGATTTA 975 Query 974 TT-TTTGCTGGAATGACTGGTACAAATGAAATTGTGTTGTCGCCAAAG-TATCCATCTCA 1031 |||| |||| ||||| ||||||| |||||| |||||||||| | |||| | | Sbjct 976 CGCTTTGTTGGAGTGACTCGTACAAACGAAATTATGTTGTCGCCGT-GCTATCAAACAGT 1034 Query 1032 CCCTTTCTATGTTTTCTACTACAAT-TTGGAGAGGAATACTATCAGAAGAGTTGAAATCC 1090 |||||| | || ||||||| |||| ||| ||| || || || | ||| |||| ||| | Sbjct 1035 GCCTTTCGACGTCTTCTACTTCAATATTG-AGAAAAAGACGATGATAAGTGTTGCAATAC 1093 Query 1091 AAGGAATGGGAGCGTTTAAGGTT-A-ATGAAGAT--TACATCT-TTCTAGACCATGTAGA 1145 ||||||||| ||||||| ||| | | || | | | | || || || ||||||||||||| Sbjct 1094 AAGGAATGGAAGCGTTTCAGGGTCACAT-A-G-TCCT-CACCTATT-TAGACCATGTAGA 1148 Query 1146 GGATGTGAAGCTT 1158 | ||||||||| Sbjct 1149 AAACGTGAAGCTT 1161 > Ahg939174 jgi|Araly1|939174|scaffold_503365.1 Length=2186 Score = 104 bits (56), Expect = 1e-21 Identities = 101/122 (83%), Gaps = 6/122 (5%) Strand=Plus/Plus Query 1035 TTTCTATGTTTTCTACTACAATTTGGAGAGGAATACTATCAGAAGAGTTGA-AATCCAAG 1093 |||||| ||| |||||||||| ||||| |||||| ||| ||| ||| | |||||||| Sbjct 2019 TTTCTACCTTTCCTACTACAATCCCGAGAGTAATACTCTCACAAGGGTT-AGAATCCAAG 2077 Query 1094 GAATGGGAGCGTTTAAGGTTAA--TGAAGATTACATCTTTCTAGACCATGTAGAGGATGT 1151 |||||| ||| ||||||| || | ||| |||||||||||||||||||||||||||| | Sbjct 2078 GAATGGAAGCTTTTAAGG--AACGTAAAGTTTACATCTTTCTAGACCATGTAGAGGATTT 2135 Query 1152 GA 1153 || Sbjct 2136 GA 2137 > Ahg480507 jgi|Araly1|480507|fgenesh2_kg.3__3208__AT2G19630.2 Length=627 Score = 87.9 bits (47), Expect = 1e-16 Identities = 64/72 (89%), Gaps = 2/72 (3%) Strand=Plus/Plus Query 130 AGATGTCGTTGCGTATCAAAGCTTTGGGCCTCCATACTCCGCC-TACCCTATTTCACGGA 188 |||||||||||||||||||||||||||||||||||||| ||| | || ||||||| || Sbjct 1 AGATGTCGTTGCGTATCAAAGCTTTGGGCCTCCATACTTAGCCGT-CCAGATTTCACCGA 59 Query 189 GTTGTACTTGAC 200 ||||| |||||| Sbjct 60 GTTGTTCTTGAC 71 > Ahg936029 jgi|Araly1|936029|scaffold_500220.1 Length=666 Score = 86.1 bits (46), Expect = 5e-16 Identities = 153/202 (76%), Gaps = 17/202 (8%) Strand=Plus/Plus Query 510 AAGCCATTTTGGGTATGATCCTATTGAGAAACAATTCAAGGTATTGT-CAAT-GAATATA 567 |||| |||| |||| ||||||||| || ||||| ||||||||||| | | | | || || Sbjct 49 AAGCTATTTCGGGTTTGATCCTATCGACAAACATTTCAAGGTATTATGC-TTGGGAT-TA 106 Query 568 GGTGATGGGGTCTATAAAGAGCATTATGTTCTGACATTAGGAACT-GAGAACCTCTCTTG 626 |||| | | || ||| || | | ||| ||||| |||| | | || || || ||||| Sbjct 107 GGTGTTATAG--TAGAAA-AGTACCAAGTTATGACACTAGGGATTGGA-AAACTTTCTTG 162 Query 627 GAGAAGGATCGAATGTT-CTATACCCCATGT-TCATGGTTCTA--AAGGGATATGCATCA 682 ||||| ||| ||||||| | | | | ||| | || | || || | ||||||||||||| Sbjct 163 GAGAATGATTGAATGTTGC-AAAGCGCAT-TATCCT--TTATATGATGGGATATGCATCA 218 Query 683 ATGGTGTTTTGTATTATCGAGC 704 |||||||||||||||||||||| Sbjct 219 ATGGTGTTTTGTATTATCGAGC 240 > Ahg936026 jgi|Araly1|936026|scaffold_500217.1 Length=666 Score = 86.1 bits (46), Expect = 5e-16 Identities = 153/202 (76%), Gaps = 17/202 (8%) Strand=Plus/Plus Query 510 AAGCCATTTTGGGTATGATCCTATTGAGAAACAATTCAAGGTATTGT-CAAT-GAATATA 567 |||| |||| |||| ||||||||| || ||||| ||||||||||| | | | | || || Sbjct 49 AAGCTATTTCGGGTTTGATCCTATCGACAAACATTTCAAGGTATTATGC-TTGGGAT-TA 106 Query 568 GGTGATGGGGTCTATAAAGAGCATTATGTTCTGACATTAGGAACT-GAGAACCTCTCTTG 626 |||| | | || ||| || | | ||| ||||| |||| | | || || || ||||| Sbjct 107 GGTGTTATAG--TAGAAA-AGTACCAAGTTATGACACTAGGGATTGGA-AAACTTTCTTG 162 Query 627 GAGAAGGATCGAATGTT-CTATACCCCATGT-TCATGGTTCTA--AAGGGATATGCATCA 682 ||||| ||| ||||||| | | | | ||| | || | || || | ||||||||||||| Sbjct 163 GAGAATGATTGAATGTTGC-AAAGCGCAT-TATCCT--TTATATGATGGGATATGCATCA 218 Query 683 ATGGTGTTTTGTATTATCGAGC 704 |||||||||||||||||||||| Sbjct 219 ATGGTGTTTTGTATTATCGAGC 240 > Ahg923911 jgi|Araly1|923911|scaffold_105192.1 Length=1160 Score = 60.2 bits (32), Expect = 3e-08 Identities = 162/219 (74%), Gaps = 32/219 (15%) Strand=Plus/Plus Query 516 TTTTGGGTATGATCCTATTGAGAAACAATTCAAGGTATT--G--TCA-A-TGAAT--ATA 567 ||||||||||||||| || || ||||||||||||||||| | ||| | || | || Sbjct 485 TTTTGGGTATGATCCGATCGACAAACAATTCAAGGTATTGCGTATCACATTG-TTGCCTA 543 Query 568 -GG--TGA-TGGGGT-CTATAAAGAGCATTATGTTCTGACATTAGGAAC-T-GAGAACCT 620 || | | | ||| |||| ||| || | |||||||||||||| | | || || || Sbjct 544 GGGACTCACAGTGGTGGTATAGTGAGTATCAAGTTCTGACATTAGG-GCTTGGA-AATCT 601 Query 621 CTCTTGGAGAAGGATCGAATGTT-CTATACCCCATGTTCATGGTTCTA-AAG-----GG- 672 || ||||||| |||| |||||| | | ||| || || || ||||| ||| || Sbjct 602 TTCATGGAGAAAGATCCAATGTTGC-ACACCTCA--TT-AT-ATTCTAGAAGATTATGGT 656 Query 673 ATATGCATCAATGGTGTTTTGTATTATCGAGCAAAGGCT 711 |||||||||||||||||||||||||||| |||| |||| Sbjct 657 ATATGCATCAATGGTGTTTTGTATTATCCCGCAA-GGCT 694 > Ahg931794 jgi|Araly1|931794|scaffold_304251.1 Length=476 Score = 58.4 bits (31), Expect = 1e-07 Identities = 31/31 (100%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 668 AAGGGATATGCATCAATGGTGTTTTGTATTA 698 ||||||||||||||||||||||||||||||| Sbjct 275 AAGGGATATGCATCAATGGTGTTTTGTATTA 305 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43422002463 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5