BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31470.1
Length=1164
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344998 jgi|Araly1|344998|fgenesh1_pg.C_scaffold_4001340 165 7e-40
Ahg496820 jgi|Araly1|496820|fgenesh2_kg.8__2636__AT5G65850.1 141 1e-32
Ahg939174 jgi|Araly1|939174|scaffold_503365.1 104 1e-21
Ahg480507 jgi|Araly1|480507|fgenesh2_kg.3__3208__AT2G19630.2 87.9 1e-16
Ahg936029 jgi|Araly1|936029|scaffold_500220.1 86.1 5e-16
Ahg936026 jgi|Araly1|936026|scaffold_500217.1 86.1 5e-16
Ahg923911 jgi|Araly1|923911|scaffold_105192.1 60.2 3e-08
Ahg931794 jgi|Araly1|931794|scaffold_304251.1 58.4 1e-07
> Ahg344998 jgi|Araly1|344998|fgenesh1_pg.C_scaffold_4001340
Length=606
Score = 165 bits (89), Expect = 7e-40
Identities = 374/506 (74%), Gaps = 41/506 (8%)
Strand=Plus/Plus
Query 73 ATCCCAATTGATCTCGTTATCGAGATATTCTCAAGGTCGCCTGTGAAGTCTATAGCAAGA 132
|||||| |||||||| || |||||||||| || |||| | | ||||||||||||||||||
Sbjct 103 ATCCCAGTTGATCTCATTGTCGAGATATTATCTAGGTTGTCGGTGAAGTCTATAGCAAGA 162
Query 133 TGTCGTTGCGTATCAAAGCTTTGGGCCTCCATACTCCGCC-TACCCTATTTCACGGAGTT 191
|||||||||||||| ||||| ||| ||||| |||| |||| | || ||||||| |||||
Sbjct 163 TGTCGTTGCGTATCGAAGCTCTGGACCTCCGTACTTCGCCGT-CCAGATTTCACAGAGTT 221
Query 192 GTACTTGACCAA-ATCTTGTG-CTCGCCCG-AGGCTCTTGTTCGCCTGCCAAA-AACACA 247
|| ||||| || ||||| || |||| ||| || | ||| |||||| ||||| || ||
Sbjct 222 GTTTTTGAC-AAGATCTT-TGGCTCGACCGCAGA-TATTGGTCGCCTACCAAACAA-ACG 277
Query 248 GAGAGTTGTTCTTCTTCTCGACACCTCAGCCTCATAA-TCCT--AA-TGAGAGCTCGTCT 303
|||| || ||||||| ||| |||||||||| || || | || ||| | |||||||
Sbjct 278 GAGAATTCTTCTTCTCCTCCTGGCCTCAGCCTCG-AAGTC-TGGAAGTGA-A-CTCGTCT 333
Query 304 CCTTTA-GCTGCCAGTTTTCATATGAAAATTCCCTTTGATGGTCGCTTTAATATTATCAG 362
|| || | | || | || || | | |||||| ||||| || ||| ||| | |
Sbjct 334 CCGGTAAG-TATCAATCATCTTAAGCGCCTCCCCTTTTCTGGTCCCTGTAAAATTCTTGG 392
Query 363 TCCTATCGGTGGCCTTG-TCTTTGTTA--GATATGAACAGATCTTAAAGGGAAGGAAAAC 419
|| | || ||| ||| ||| | ||| || | || | | ||||||| ||||||| |
Sbjct 393 TCTTGTCCAAGGC-TTGGTCTGTCTTATAGACA-GA-CGGTTCTTAAACGGAAGGA---C 446
Query 420 TCCAGAATT-TGTCTCGGCGATATGTAACCCTAGCACGGGACAATCCTTAACCTTA-CCA 477
|||| || | | | |||||||||||||||||| ||| |||||||| | ||| |||
Sbjct 447 G--AGAACGGTG-C-CAGTGATATGTAACCCTAGCACTGGAGAATCCTTATCTTTATCCA 502
Query 478 AAACCTAAGACAAGGAAGAGG-ATTTGGGGTACAAGCCATTTTGGGTATGATCCTATTGA 536
|| ||||| |||| || | | | || |||| ||||||||||||||| |||||
Sbjct 503 CAATG-AAGACGAGGA-GATGCAAC-GT--TATAAGCTTTTTTGGGTATGATCCGATTGA 557
Query 537 GAAACAATTCAAGGTATTGTCAATGA 562
|||||| | |||| | ||||| ||||
Sbjct 558 GAAACAGTACAAGATCTTGTCCATGA 583
> Ahg496820 jgi|Araly1|496820|fgenesh2_kg.8__2636__AT5G65850.1
Length=1179
Score = 141 bits (76), Expect = 1e-32
Identities = 444/613 (72%), Gaps = 59/613 (10%)
Strand=Plus/Plus
Query 586 GAGCATTATGTTCTGACATTAGGAACT-GAGAACCTCTCTTGGAGAAGGATCGAATGTTC 644
|||||| | ||||||||| |||||||| ||||| || || ||||||| ||| ||||||||
Sbjct 568 GAGCATCAAGTTCTGACACTAGGAACTGGAGAA-CTGTCATGGAGAATGATTGAATGTTC 626
Query 645 TATACCCCATGTTCATGG-TTCTAAAGGGATATGCATCAATGGTGTTTTGTATTATCGAG 703
||||| ||| ||| ||| || | | ||||||||||||||||||||||||||||| ||
Sbjct 627 CATACCTCATATTCCTGGATTGT-CTGAGATATGCATCAATGGTGTTTTGTATTATCCAG 685
Query 704 CAAAGGCTGACATGTTTTCAGGT-ACTTTA-ATGATAGTTTGCTTTGATGTTAGGTTTGA 761
| | | || ||| |||||| | || | || || |||||||| |||| ||||| ||
Sbjct 686 CGAT--C-GATTTGTCTTCAGGGGA-TT-ACATTATCGTTTGCTTCGATGCTAGGTCCGA 740
Query 762 GAAGTTCAGCTATATTAAAATCTTG-AA-AC--C-T-ACA--A-C--A--AC----T-CT 803
|||||| || | ||||| | || || || | | | | | | | | | | ||
Sbjct 741 GAAGTTTAGATTTATTACAGTCATGGAAGATTTCATTAAAGCAGCGCATGATGGAATTCT 800
Query 804 GATTAGCTACAACGGTAAATTGGCTTCACTAGTGTGGGAA-GGGC---CTA-GTT-ATAT 857
||||| |||||| |||||||| |||||||| || | ||| ||| || ||| ||
Sbjct 801 GATTAACTACAATGGTAAATTAGCTTCACTTGTTTCTGAAAGGGGTTGCTTTGTTGATGG 860
Query 858 TTGTGG-AAAACGTTTTGAAATGTGGGTTTTAGGAGACCCCGAAAAACATGAATGGTTGA 916
|| | ||||| | |||| |||||||| || ||| | ||||| || ||||||| ||
Sbjct 861 ACGTAGTAAAAC-TATTGAGTTGTGGGTTCTACAAGATGCTGAAAAGCAGGAATGGTCGA 919
Query 917 AGCATACT-TACGAATTGCGTC-CTCGGTGGCAGAATGTACTTGGAGAGGACTTG-TTAA 973
||| || | |||| ||||| | || |||||||| || | ||||| | || | || |
Sbjct 920 AGCTTA-TATACGTATTGCC-CGCTTGGTGGCAGGATATGGTTGGA-ACC-CTCGATTTA 975
Query 974 TT-TTTGCTGGAATGACTGGTACAAATGAAATTGTGTTGTCGCCAAAG-TATCCATCTCA 1031
|||| |||| ||||| ||||||| |||||| |||||||||| | |||| | |
Sbjct 976 CGCTTTGTTGGAGTGACTCGTACAAACGAAATTATGTTGTCGCCGT-GCTATCAAACAGT 1034
Query 1032 CCCTTTCTATGTTTTCTACTACAAT-TTGGAGAGGAATACTATCAGAAGAGTTGAAATCC 1090
|||||| | || ||||||| |||| ||| ||| || || || | ||| |||| ||| |
Sbjct 1035 GCCTTTCGACGTCTTCTACTTCAATATTG-AGAAAAAGACGATGATAAGTGTTGCAATAC 1093
Query 1091 AAGGAATGGGAGCGTTTAAGGTT-A-ATGAAGAT--TACATCT-TTCTAGACCATGTAGA 1145
||||||||| ||||||| ||| | | || | | | | || || || |||||||||||||
Sbjct 1094 AAGGAATGGAAGCGTTTCAGGGTCACAT-A-G-TCCT-CACCTATT-TAGACCATGTAGA 1148
Query 1146 GGATGTGAAGCTT 1158
| |||||||||
Sbjct 1149 AAACGTGAAGCTT 1161
> Ahg939174 jgi|Araly1|939174|scaffold_503365.1
Length=2186
Score = 104 bits (56), Expect = 1e-21
Identities = 101/122 (83%), Gaps = 6/122 (5%)
Strand=Plus/Plus
Query 1035 TTTCTATGTTTTCTACTACAATTTGGAGAGGAATACTATCAGAAGAGTTGA-AATCCAAG 1093
|||||| ||| |||||||||| ||||| |||||| ||| ||| ||| | ||||||||
Sbjct 2019 TTTCTACCTTTCCTACTACAATCCCGAGAGTAATACTCTCACAAGGGTT-AGAATCCAAG 2077
Query 1094 GAATGGGAGCGTTTAAGGTTAA--TGAAGATTACATCTTTCTAGACCATGTAGAGGATGT 1151
|||||| ||| ||||||| || | ||| |||||||||||||||||||||||||||| |
Sbjct 2078 GAATGGAAGCTTTTAAGG--AACGTAAAGTTTACATCTTTCTAGACCATGTAGAGGATTT 2135
Query 1152 GA 1153
||
Sbjct 2136 GA 2137
> Ahg480507 jgi|Araly1|480507|fgenesh2_kg.3__3208__AT2G19630.2
Length=627
Score = 87.9 bits (47), Expect = 1e-16
Identities = 64/72 (89%), Gaps = 2/72 (3%)
Strand=Plus/Plus
Query 130 AGATGTCGTTGCGTATCAAAGCTTTGGGCCTCCATACTCCGCC-TACCCTATTTCACGGA 188
|||||||||||||||||||||||||||||||||||||| ||| | || ||||||| ||
Sbjct 1 AGATGTCGTTGCGTATCAAAGCTTTGGGCCTCCATACTTAGCCGT-CCAGATTTCACCGA 59
Query 189 GTTGTACTTGAC 200
||||| ||||||
Sbjct 60 GTTGTTCTTGAC 71
> Ahg936029 jgi|Araly1|936029|scaffold_500220.1
Length=666
Score = 86.1 bits (46), Expect = 5e-16
Identities = 153/202 (76%), Gaps = 17/202 (8%)
Strand=Plus/Plus
Query 510 AAGCCATTTTGGGTATGATCCTATTGAGAAACAATTCAAGGTATTGT-CAAT-GAATATA 567
|||| |||| |||| ||||||||| || ||||| ||||||||||| | | | | || ||
Sbjct 49 AAGCTATTTCGGGTTTGATCCTATCGACAAACATTTCAAGGTATTATGC-TTGGGAT-TA 106
Query 568 GGTGATGGGGTCTATAAAGAGCATTATGTTCTGACATTAGGAACT-GAGAACCTCTCTTG 626
|||| | | || ||| || | | ||| ||||| |||| | | || || || |||||
Sbjct 107 GGTGTTATAG--TAGAAA-AGTACCAAGTTATGACACTAGGGATTGGA-AAACTTTCTTG 162
Query 627 GAGAAGGATCGAATGTT-CTATACCCCATGT-TCATGGTTCTA--AAGGGATATGCATCA 682
||||| ||| ||||||| | | | | ||| | || | || || | |||||||||||||
Sbjct 163 GAGAATGATTGAATGTTGC-AAAGCGCAT-TATCCT--TTATATGATGGGATATGCATCA 218
Query 683 ATGGTGTTTTGTATTATCGAGC 704
||||||||||||||||||||||
Sbjct 219 ATGGTGTTTTGTATTATCGAGC 240
> Ahg936026 jgi|Araly1|936026|scaffold_500217.1
Length=666
Score = 86.1 bits (46), Expect = 5e-16
Identities = 153/202 (76%), Gaps = 17/202 (8%)
Strand=Plus/Plus
Query 510 AAGCCATTTTGGGTATGATCCTATTGAGAAACAATTCAAGGTATTGT-CAAT-GAATATA 567
|||| |||| |||| ||||||||| || ||||| ||||||||||| | | | | || ||
Sbjct 49 AAGCTATTTCGGGTTTGATCCTATCGACAAACATTTCAAGGTATTATGC-TTGGGAT-TA 106
Query 568 GGTGATGGGGTCTATAAAGAGCATTATGTTCTGACATTAGGAACT-GAGAACCTCTCTTG 626
|||| | | || ||| || | | ||| ||||| |||| | | || || || |||||
Sbjct 107 GGTGTTATAG--TAGAAA-AGTACCAAGTTATGACACTAGGGATTGGA-AAACTTTCTTG 162
Query 627 GAGAAGGATCGAATGTT-CTATACCCCATGT-TCATGGTTCTA--AAGGGATATGCATCA 682
||||| ||| ||||||| | | | | ||| | || | || || | |||||||||||||
Sbjct 163 GAGAATGATTGAATGTTGC-AAAGCGCAT-TATCCT--TTATATGATGGGATATGCATCA 218
Query 683 ATGGTGTTTTGTATTATCGAGC 704
||||||||||||||||||||||
Sbjct 219 ATGGTGTTTTGTATTATCGAGC 240
> Ahg923911 jgi|Araly1|923911|scaffold_105192.1
Length=1160
Score = 60.2 bits (32), Expect = 3e-08
Identities = 162/219 (74%), Gaps = 32/219 (15%)
Strand=Plus/Plus
Query 516 TTTTGGGTATGATCCTATTGAGAAACAATTCAAGGTATT--G--TCA-A-TGAAT--ATA 567
||||||||||||||| || || ||||||||||||||||| | ||| | || | ||
Sbjct 485 TTTTGGGTATGATCCGATCGACAAACAATTCAAGGTATTGCGTATCACATTG-TTGCCTA 543
Query 568 -GG--TGA-TGGGGT-CTATAAAGAGCATTATGTTCTGACATTAGGAAC-T-GAGAACCT 620
|| | | | ||| |||| ||| || | |||||||||||||| | | || || ||
Sbjct 544 GGGACTCACAGTGGTGGTATAGTGAGTATCAAGTTCTGACATTAGG-GCTTGGA-AATCT 601
Query 621 CTCTTGGAGAAGGATCGAATGTT-CTATACCCCATGTTCATGGTTCTA-AAG-----GG- 672
|| ||||||| |||| |||||| | | ||| || || || ||||| ||| ||
Sbjct 602 TTCATGGAGAAAGATCCAATGTTGC-ACACCTCA--TT-AT-ATTCTAGAAGATTATGGT 656
Query 673 ATATGCATCAATGGTGTTTTGTATTATCGAGCAAAGGCT 711
|||||||||||||||||||||||||||| |||| ||||
Sbjct 657 ATATGCATCAATGGTGTTTTGTATTATCCCGCAA-GGCT 694
> Ahg931794 jgi|Araly1|931794|scaffold_304251.1
Length=476
Score = 58.4 bits (31), Expect = 1e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 668 AAGGGATATGCATCAATGGTGTTTTGTATTA 698
|||||||||||||||||||||||||||||||
Sbjct 275 AAGGGATATGCATCAATGGTGTTTTGTATTA 305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43422002463
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5