BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31480.1
Length=2022
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482077 jgi|Araly1|482077|fgenesh2_kg.4__1137__AT2G31480.1 2191 0.0
> Ahg482077 jgi|Araly1|482077|fgenesh2_kg.4__1137__AT2G31480.1
Length=1510
Score = 2191 bits (1186), Expect = 0.0
Identities = 1408/1515 (93%), Gaps = 16/1515 (1%)
Strand=Plus/Plus
Query 4 CAAACCAAACATTGTATTTTGGCTCTGAAGATTGAAGGAGCTAAACTGAAACTGCAATAT 63
||||| |||| ||||||||||| |||||| ||||||||||||||||||||||| ||||||
Sbjct 1 CAAACAAAACTTTGTATTTTGGTTCTGAATATTGAAGGAGCTAAACTGAAACTACAATAT 60
Query 64 ATATGGCTTCTACAGGTGGTGGGAAAGATGGATCTAAAGGTTTTGTGAAGAGGGTTACAT 123
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 ATATGGCTTCTACAGGTGGTGGGAAAGATGGATCTAGAGGTTTTGTGAAGAGGGTTACAT 120
Query 124 CAACTTTCTCCATTAGGAAAAAGAAGAACACAACAAGTGATCCAAAACTACTTCTTCCTC 183
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 121 CAACTTTCTCCATTAGGAAAAAGAAGAACACAACAAGTGATCCAAAACTTCTTCTTCCAC 180
Query 184 GATCGAAATCAACCGGTGCTAACTATGAATCTATGAGGCTACCTCAGGGGAAAAAGGCTC 243
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 181 GATCGAAATCAACCGGTGCTAACTATGAATCCATGAGGCTGCCTCAGGGGAAAAAGGCTC 240
Query 244 TTCCAGATGTTGTTACAACAAAAGACACAAAGAGAACCAAATCTGCAGGTGTTTCGCCAC 303
||||||||| | |||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 241 TTCCAGATGCT---ACAACAAAAGACACTAAGAGGACTAAATCTGCAGGTGTTTCGCCAC 297
Query 304 AACCAAGACGTGAAAAGATTGATGAATCCGGTAAACAGTTTATGAAGGTGAGATGTTTTG 363
||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 298 AACCAAGGCGTGAAAAGATCGATGAATCCGGTAAACAGTTTATGAAGATGAGATGTTTTG 357
Query 364 ATGACAGTGACTCCATTTGGTTATCTTCAGATTGTGCCTCTCCTACGTCTCTTTTAGAGG 423
|||| | ||||||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 358 ATGATAATGACTCCATTTGGTTGTCTTCAGATTGCGCGTCTCCTACGTCTCTTTTAGAGG 417
Query 424 AACGTAGATTATCTGTCTCGTTTCATTTCTCAGTAGACGAAAAGATCGTCTCGTGGTTGT 483
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 418 AACGAAGATTGTCTGTCTCGTTTCATTTCTCAGTAGACGAAAAGATCGTCTCATGGTTGT 477
Query 484 CCAGTGTGGCTAACTCTTCTCTGTCTTTAAATCAAGAATCCACCAGCTCAAACAAAGAGA 543
| |||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 478 CTAGTGTGGCGAACTCTTCTCTGTCTTTAAATCAAGAATCCACCAGATCAACCAAAGAGA 537
Query 544 ATCATCATCaaaaaagttcaaagaacacaaaaacttctttagaaaacgttcgaaaagatg 603
||||||| |||| ||||||||||||| ||||| |||||| |||||| ||||||| ||||
Sbjct 538 ATCATCAGCAAACAAGTTCAAAGAACGCAAAATGTTCTTTGGAAAACATTCGAAAGGATG 597
Query 604 gaaaagTTTGCAACTCATCAGCTGGGAAAGCTCGTGGTACTGGTTCTGCAAAGCCGTCTT 663
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 598 GAAAATTTTGCAACTCA---GCTGGGAAAGCTCGTGGAACTGGTTCTGCAAAGCCGTCTT 654
Query 664 ----T--ACCAGAAAGCAACAACAAGACTTGTCCTCAGAAACAATGTGAAGAGTCATCTA 717
| ||||||||||||||||||| ||||||||||||||| ||||||| |||||||||
Sbjct 655 CGCGTTTACCAGAAAGCAACAACAAGCCTTGTCCTCAGAAACCATGTGAAAAGTCATCTA 714
Query 718 TTTCCAACAGATTTGTGACTCTTGAAGAAAAGAAAGTTAGCTTCTCAGTAGCAA-AAACA 776
|||||| ||||| |||| || ||||||||||||||||||||||||||||| || |||||
Sbjct 715 GTTCCAATAGATTAGTGAGTCCTGAAGAAAAGAAAGTTAGCTTCTCAGTAG-AAGAAACA 773
Query 777 GAGAAGTCTCCTTCACCAGATAACTCAACTGCCACTGCGACATCATCATTAAAGAAGAGT 836
||||||||||||||||| | ||| ||||||||||| |||||||| || ||||||||||||
Sbjct 774 GAGAAGTCTCCTTCACCGGTTAATTCAACTGCCACCGCGACATCCTCGTTAAAGAAGAGT 833
Query 837 GCAGAGATTGGGGTCACAAAGAGTAAGATTGTTGTGGAGCCACTTTTTTGGCCATTTGAG 896
||||||||| || | ||||||| ||||||| ||||||||||||||| ||||||||||||
Sbjct 834 GCAGAGATTAAGGACTCAAAGAGCAAGATTGCTGTGGAGCCACTTTTCTGGCCATTTGAG 893
Query 897 CAGAAGTTTGATTGGACACCAGAGGATATTTTAAAGCATTTTTCAATGTCTCCGA-GGAG 955
||||||||||||||||||||||||||||| ||||||||||| || |||||||| | ||||
Sbjct 894 CAGAAGTTTGATTGGACACCAGAGGATATCTTAAAGCATTTCTCCATGTCTCC-ACGGAG 952
Query 956 AAAGAAGTCGCTAGGATCCAAGATTGCAGGTACCTCTCCAAGATCAATGAGGGCACAACT 1015
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 953 AAAGAAGTCGCTAGGATCCAAAATTGCAGGTACCTCTCCAAGATCAATGAGGGCACAACT 1012
Query 1016 CCAAACAAGAAAGCTAGATCTAAAAGAAGGGTGTAAGAGAAAGCTCATGTTCAACGGTCC 1075
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1013 CCAAACAAGAAAGCTAGATCTCAAAGAAGGGTGTAAGAGGAAGCTCATGTTCAACGGTCA 1072
Query 1076 TGGATCAAATTCAAAACCAACAAGAATCCCAGAACTAAACAGAACAATCAGCAATAGCAG 1135
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1073 TGGATCAAATTCAAAACCAACAAGGATCCCAGAACTAAACAGAACAATCAGCACTAGCAG 1132
Query 1136 CAACAATAGTAGCATGAAGAAAACCGAGATCAGCAAGAACCAACAACCTATAAGGAACAG 1195
|||||| ||| ||| ||||| ||||||||||| |||||| |||||||||||||||||||
Sbjct 1133 CAACAACAGTTGCACCAAGAAGACCGAGATCAGTAAGAACGAACAACCTATAAGGAACAG 1192
Query 1196 TGTGAAGAGAAACAAAAGTTTACCGTCGAGGTTGAGAAAATCGAGCAAAATATCTTCAAA 1255
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1193 TGTGAAGAGAAACAAAAGTTTGCCGTCGAGGTTGAGAAAATCGAGCAAAATATCTTCAAA 1252
Query 1256 GGTGGTACCTATTGAAGCTGCGGAAGAGAGTGGAGAAATAGTTAAAGAGCAAAAAACACC 1315
|||||||||| |||||||||| || |||| || ||||||| |||| ||||||||||||||
Sbjct 1253 GGTGGTACCTGTTGAAGCTGCAGATGAGACTGTAGAAATACTTAAGGAGCAAAAAACACC 1312
Query 1316 TAAGAAGCTCATCATGACCCGCAAGTCCAGGACATTCTTAGAAGATGACTTTGCTTTAAT 1375
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1313 TAAGAAGCTCATCATGACACGCAAATCCAGGACATTCTTAGAAGATGACTTTGCTTTGAT 1372
Query 1376 GAATGATTTCTCTATAGAAAAGGCGGTCGGGCTTTGCGAGTTTAAGGGAAGAGAAGGCAT 1435
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1373 GAATGATTTCTCTATAGAAAAGGCGGTCGGGCTTTGCGAGTTCAAGGGAAGAGAAGGCAT 1432
Query 1436 AGATTCAGATTTCAACACTGATGGTTTCTTGTTCGACGATTCTCTATGAAAAGAAAAGGC 1495
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1433 AGATTCAGATTTCAACACTGATGGTTTCTTGTTTGACGATTCTCTATGAAAAGAGAAGGC 1492
Query 1496 TTTACAGGTTCGATA 1510
||||||||||| |||
Sbjct 1493 TTTACAGGTTCAATA 1507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76028129020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5