BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31490.1
Length=537
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933697 jgi|Araly1|933697|scaffold_401685.1 429 1e-119
> Ahg933697 jgi|Araly1|933697|scaffold_401685.1
Length=262
Score = 429 bits (232), Expect = 1e-119
Identities = 244/250 (98%), Gaps = 0/250 (0%)
Strand=Plus/Plus
Query 68 GAAAGCGAAGATGGGTGGAGGAATGGAAACGAACAAGAACAAGTTCATCGAGGACTGGGG 127
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 13 GAAAGCGAAGATGGGTGGAGGAATGGAAACGAACAAGAACAAGTTCATCGAGGATTGGGG 72
Query 128 ATCTGCTAGAGAGAATCTCGAGCACAATTTCCGCTGGACTCGTCGTAACTTCGCTCTCAT 187
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 73 ATCCGCTAGAGAGAATCTCGAGCACAATTTCCGCTGGACTCGCCGTAACTTCGCTCTCAT 132
Query 188 CGGAATCTTCGGCATCGCTCTCCCGATCATTGTCTACAAGGGAATCGTCAAAGATTTCCA 247
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 133 TGGAATCTTCGGCATCGCTCTCCCGATCATTGTTTACAAGGGAATCGTCAAAGATTTCCA 192
Query 248 TATGCAAGATGAAGATGCAGGCAGACCACACAGAAAGTTCCTCTGAGGTTGTTTGCAAGA 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 193 TATGCAAGATGAAGATGCAGGCAGACCACACAGAAAGTTCCTCTGAGGTTGTTTGTAAGA 252
Query 308 ACACTCTCTG 317
||||||||||
Sbjct 253 ACACTCTCTG 262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19573817157
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5