BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31510.1
Length=2034
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933699 jgi|Araly1|933699|scaffold_401687.1 2868 0.0
Ahg470601 jgi|Araly1|470601|fgenesh2_kg.1__555__AT1G05890.1 1583 0.0
> Ahg933699 jgi|Araly1|933699|scaffold_401687.1
Length=1726
Score = 2868 bits (1553), Expect = 0.0
Identities = 1647/1693 (97%), Gaps = 3/1693 (0%)
Strand=Plus/Plus
Query 1 ATGGATTCTGAAGAAGACATGCTCGATGCGCACGATATGGAGTCTGGAGAGGATGATTTC 60
||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 21 ATGGATTCTGAAGAAGATATGCTCGATGCACACGATATGGAGTCTGGTGAGGATGATTTC 80
Query 61 TACAGCGGTGGAACTGATGATTGTAATGATAGTGATGATGGTGAACCTGATTATGGGTTT 120
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 81 TATAGCGGTGGAACTGATGATTGTAATGATAGTGATGATGGTGAACCCGATTATGGGTTT 140
Query 121 GTTGAGGAAGATGCTGATGATTCTGCTATGATCGCCTCTCATCGCTCTCAGAAAAACTTT 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 141 GTTGAGGAAGATGCTGATGATTCTGCCATGATCGCCTCTCATCGCTCTCAGAAAAACTTT 200
Query 181 TGTGTTCTGAGGGAAGAAGATATTCGCAGGCATCAGATGGATAATATTGAACGAGTTTCC 240
|||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 201 TGTGCTCTGAGGGAAGAAGATATTCGCAGGCACCAGATGGATGATATTGAACGAGTTTCC 260
Query 241 GTTGTTCTCTCGATAACTGAGGTTGAAGCGAGTATTCTACTTCGTCACTTTCACTGGAGT 300
||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 261 GTTGTCCTCTCGATAACTGAGGTCGAAGCGAGTATTCTGCTTCGTCATTTTCACTGGAGT 320
Query 301 GTCGGTAGAGTTCATGATGAGTGGTTTGCTGATGAAGAGAGAGTTCGGAAGACTGTTGGC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 GTCGGTAGAGTTCATGATGAGTGGTTTGCTGATGAAGAGAGAGTTCGGAAGACTGTTGGC 380
Query 361 ATATTGGAGAGTCATGTTGTTCCACCATCTGATGACAGTGAACTTACATGTGGAATCTGT 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 ATATTGGAGAGTCCTGTTGTTCCACCATCTGATGACAGTGAACTTACATGTGGAATCTGT 440
Query 421 TTCGATTCCTACCCTCCTGAGAAAATCGCTTCAGTTTCTTGTGGCCATCCTTTCTGCACT 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 TTCGATTCGTACCCTCCTGAGAAAATCGCTTCAGTTTCTTGTGGCCATCCTTTCTGCACT 500
Query 481 ACATGCTGGACAGGTTATATCAGCACAACCATTAATGATGGCCCGGGATGTTTGATGCTA 540
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 501 ACATGCTGGACAGGTTATATCACCACAACCATTAATGATGGTCCGGGATGTTTGATGCTA 560
Query 541 AGATGTCCTGACCCATCTTGTCTTGCTGCTGTTGGTCATGATATGGTTGACAAATTAGCG 600
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 AGATGTCCTGATCCATCTTGTCTTGCTGCTGTTGGTCATGATATGGTTGACAAATTAGCG 620
Query 601 TCTGAAGACGAAAAGGAGAAGTACAACAGATATTTTCTTAGGTCTTATATTGAAGACAAC 660
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 TCTGAAGA-G--AAGGAGAAGTACAACAGATATTTTCTTAGGTCTTATATTGAAGACAAC 677
Query 661 AGAAAGATGAAGTGGTGTCCTGCCCCGGGATGTGATTTTGCGATTGATTTTGTTGCAGGG 720
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 678 AGAAAGATGAAGTGGTGTCCTGCCCCGGGATGTGATTATGCGATTGATTTTGTTGCAGGG 737
Query 721 TCTGGAAATTATGATGTTTCCTGCTTGTGCTCGTTTAGCTTTTGCTGGAATTGCACTGAG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 TCTGGAAATTATGATGTTTCCTGCTTGTGCTCGTTTAGCTTTTGCTGGAATTGCACTGAG 797
Query 781 GAGGCTCACCGACCTGTGGATTGTAGCACAGTTTCAAAATGGATATTAAAGAACAGCGCT 840
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 798 GAGGCTCACCGACCTGTGGATTGTAGCACAGTTTCAAAATGGATTTTGAAGAACAGCGCT 857
Query 841 GAATCTGAAAATATGAATTGGATACTTGCCAATTCAAAGCCTTGTCCGAGATGTAAGAGG 900
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 858 GAATCTGAAAATATGAATTGGATACTTGCCAATTCAAAGCCTTGTCCAAGATGTAAGCGG 917
Query 901 CCAATTGAAAAGAATCAGGGCTGTATGCACATGACATGTACACCGCCTTGTAAATATGAA 960
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 918 CCAATTGAAAAGAATCAGGGCTGTATGCACATGACATGCACACCGCCTTGTAAATATGAA 977
Query 961 TTTTGTTGGCTATGTCTTGGTGCATGGATGGATCACGGGGAAAGAACTGGTGGTTTTTAT 1020
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 978 TTTTGTTGGCTATGTCTTGGTGCATGGATGGATCATGGGGAAAGAACTGGTGGTTTTTAT 1037
Query 1021 GCTTGTAACCGTTATGAGGTGGCCAAGCAAGAAGGACAGTATGATGAGACAGAGAGGAGG 1080
||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1038 GCTTGTAACCGGTACGAGGTGGCCAAGCAAGAAGGACAGTATGATGAGACAGAAAGGAGG 1097
Query 1081 AGAGAGATGGCCAAAAATTCGCTAGAGAGATACACACACTATTATGAACGCTGGGCAAGC 1140
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1098 AGAGAGATGGCCAAAAATTCACTAGAGAGATACACACATTATTATGAACGCTGGGCAAGC 1157
Query 1141 AATCAAACGTCGAGGCAAAAGGCTATGGCTGATCTGCAGCAAGCGCAGATGCAGAATCTT 1200
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1158 AATCAAACGTCGAGGCAAAAGGCTATGGCAGATCTGCAGCAAGCGCAGACGCAGAATCTT 1217
Query 1201 GAGAAGCTTAGTGATAAACAGTGCACACCAGAGTCTCAGCTCAAATTCATTTTAGAAGCT 1260
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1218 GAGAAGCTTAGTGATAAACAGTGCACACCAGAATCTCAGCTCAAATTCATTTTAGAAGCT 1277
Query 1261 TGGCTTCAGATCATCGAATGTAGGCGAGTCTTGAAATGGACTTATGCATATGGATACTAC 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 TGGCTTCAGATCATCGAATGTAGGCGAGTCTTGAAATGGACTTATGCATATGGATACTAC 1337
Query 1321 CTACCTGAGCATGAACATGCCAAACGACAATTTTTCGAGTATTTGCAAGGTGAAGCTGAG 1380
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1338 CTACCTGATCATGAACATGCCAAACGACAATTTTTCGAGTATTTGCAAGGGGAAGCTGAG 1397
Query 1381 TCAGGTTTAGAGAGGCTCCATCAATGCGTAGAGAAAGACTTGGTTCAGTTTCTCATTGCG 1440
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||
Sbjct 1398 TCAGGTTTAGAGAGGCTCCATCAATGCGTAGAGAAGGACTTGGCTCAGTTTCTCAATGCA 1457
Query 1441 GAAGGTCCATCAAAAGATTTCAATGATTTCCGGACAAAACTAGCTGGTTTGACCAGCGTG 1500
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 GAAGGCCCATCAAAAGATTTCAATGATTTCCGGACAAAACTAGCTGGTTTGACCAGCGTG 1517
Query 1501 ACGAAAAACTACTTTGAGAATTTGGTGAAAGCTCTGGAGAACGGTCTTGCTGATGTAGAC 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1518 ACGAAAAACTACTTTGAGAATTTGGTGAAAGCTCTGGAGAACGGTCTTGCTGATGTAGAC 1577
Query 1561 TCACATGCGGCTTGCAGCAGCAAATCAACAAGCTCTAAATCAACAGGTTGCAGTAGCAAA 1620
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1578 TCACATGCGGCTTGCAGCAGCAAATCAACAAGCTCCAAATCAACAGCTTGCAGTAGCAAA 1637
Query 1621 ACAAGAGGTAAAGGCAAAGGAAGTTCCAGAACTGGTGGATCCAGCAGAAACCCAGATGAC 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1638 ACAAGAGGTAAAGGCAAAGGAAGTTCCAGAACTGGTGGATCCAGCAGAAACCCAGATGAC 1697
Query 1681 AACTTATAATAAT 1693
||||||||| |||
Sbjct 1698 AACTTATAAGAAT 1710
> Ahg470601 jgi|Araly1|470601|fgenesh2_kg.1__555__AT1G05890.1
Length=2143
Score = 1583 bits (857), Expect = 0.0
Identities = 1431/1704 (84%), Gaps = 56/1704 (3%)
Strand=Plus/Plus
Query 1 ATGGATTCTGAAGAAGACATGCTCGATGCGCACGATATGGAGT-CTGGAGAGGATGATTT 59
|||||||| || || || ||||||||||| ||||||||||| | | ||||| ||||||||
Sbjct 162 ATGGATTCCGATGATGATATGCTCGATGCCCACGATATGGAATAC-GGAGATGATGATTT 220
Query 60 CTACAGCGGTGGAACTGATGATTGTAATGATAGTGATGATGGTGAACCTGATTATGGGTT 119
|||||||| || || || |||| | ||||||||||||| |||| ||||||| |||||
Sbjct 221 TTACAGCGGCGGCACCGACGATTACGACGATAGTGATGATGTTGAAACTGATTACGGGTT 280
Query 120 TGTTGAGGAAGATGCTGATGATTCTGCTATGATCGCCTCTCATCGCTCTCAGAAAAACTT 179
|| ||||| ||| || |||||||| || || |||||||| ||||||||||||| ||| ||
Sbjct 281 TGGTGAGGCAGACGCCGATGATTCCGCCATTATCGCCTCCCATCGCTCTCAGATAAA-TT 339
Query 180 TTG-TGTTCTGAGGGAAGAAGATATTCGCAGGCATCAGATGGATAATATTGAACGAGTTT 238
|| |||||| | |||||||||||||||||||||||||| ||| || ||| |||||||
Sbjct 340 ATGTTGTTCTCAAGGAAGAAGATATTCGCAGGCATCAGAACGATGATGTTGGGCGAGTTT 399
Query 239 CCGTTGTTCTCTCGATAACTGAGGTTGAAGCGAGTATTCTACTTCGT-CACTTTCACT-G 296
|||| || ||||| |||||||| || ||||| || ||| | |||| | |||| ||||| |
Sbjct 400 CCGTGGTCCTCTCCATAACTGATGTCGAAGCAAGCATTTTGCTTC-TCCACTATCACTGG 458
Query 297 GAGTGTCGGTAGAGTTCATGATGAGTGGTTTGCTGATGAAGAGAGAGTTCGGAAG-ACTG 355
|| ||| ||| |||||||||||| |||||||| ||||| |||||||||||| || ||||
Sbjct 459 GA-TGTTAGTAAAGTTCATGATGAATGGTTTGCGGATGAGGAGAGAGTTCGG-AGAACTG 516
Query 356 TTGGCATATTGGAGAGTCATGTTGTTCCACCATCTGATGACAGTGAACTTACATGTGGAA 415
|||||||||| ||| | | |||||||||| || |||||| ||| ||||||||||||||||
Sbjct 517 TTGGCATATTAGAGGGACCTGTTGTTCCAACACCTGATGGCAGAGAACTTACATGTGGAA 576
Query 416 TCTG-TTTCGATTCCTACCCTCCTGAGAAAATCGCT-TCAGTTTCTTGTGGCCATCCTTT 473
| || ||| || |||||||||| |||| | || | | || | ||||||||| ||||||||
Sbjct 577 TATGCTTT-GAATCCTACCCTCTTGAGGATATTG-TATCGGCTTCTTGTGGTCATCCTTT 634
Query 474 CTGCACTACATGCTGGACAGGTTATATCAGCACAACCATTAATGATGGCCCGGGATGTTT 533
|||||||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 635 CTGCACTACATGTTGGACGGGTTATATAAGCACAACCATCAATGATGGCCCAGGATGTTT 694
Query 534 GATGCTAAGATGTCCTGACCCATCTTGTCTTGCTGCTGTTGGTC-ATGATATGGTTGACA 592
|||||||| |||||||||||| ||||||| ||||||| |||||| | |||||| | || |
Sbjct 695 GATGCTAAAATGTCCTGACCCTTCTTGTCCTGCTGCTATTGGTCGA-GATATGATCGATA 753
Query 593 AATTAGCGTCTG-AA-GACGAAAAGGAGAAGTACAACAGATATTTTCTTAGGTCTTATAT 650
|||| || | || || || || ||||||||||| | |||||||||||||| |||||| |
Sbjct 754 AATTGGC-T-TGTAAGGAAGACAAGGAGAAGTATTATAGATATTTTCTTAGATCTTATGT 811
Query 651 TGAAGACAACAGAAAGATGAAGTGGTGTCCTGCCCCGGGATGTGATTTTGCGATTGATTT 710
|||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct 812 TGAAGACAACAGAAAGATGAAGTGGTGTCCTGCCCCAGGATGTGAGCATGCAATTGATTT 871
Query 711 TGTTGCAGGGTCTGGAAA-TTATGATGTTTCCTGCTTGTGCTCGTTTAGCTTTTGCTGGA 769
|| ||| ||| || |||| |||||||||||| |||||||| ||| ||||||||||||||
Sbjct 872 TGCTGCTGGGACT-GAAAGTTATGATGTTTCGTGCTTGTGTTCGCATAGCTTTTGCTGGA 930
Query 770 ATTGCACTGAGGAGGCTCACCGACCTGTGGATTGTAG-CACAGTTTCAAAATGGATATTA 828
|||||||||| ||||||||||| |||||||||||| | ||||||| ||||||||| ||
Sbjct 931 ATTGCACTGAAGAGGCTCACCGTCCTGTGGATTGT-GACACAGTTGGGAAATGGATACTA 989
Query 829 AAGAACAGCGCTGAATCTGAAAATATGAATTGGATACTTGCCAATTCAAAGCCTTGTCCG 888
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 AAGAACAGCGCTGAATCTGAAAATATGAATTGGATACTTGCCAATTCAAAGCCTTGTCCA 1049
Query 889 AGATGTAAGAGGCCAATTGAAAAGAATCAGGGCTGTATGCACATGACATGTACACCGCCT 948
|| |||||| ||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 1050 AGGTGTAAGCGGCCAATTGAAAAGAATCATGGCTGTATGCACATGACATGCACACCACCT 1109
Query 949 TGTAAATATGAATTTTGTTGGCTATGTCTTGGTGCATGGATGGATCACGGGGAAAGAACT 1008
|||||| |||| ||||||||||| || ||| ||||||| || |||||||||||||||
Sbjct 1110 TGTAAACATGAGTTTTGTTGGCTTTGCCTTAACGCATGGACAGAACACGGGGAAAGAACT 1169
Query 1009 GGTGGTTTTTATGCTTGTAACCGTTATGAGGTGGCCAAGCAAGAAGGACAGTATGATGAG 1068
||||| |||||||| || ||||| ||||||| ||| ||| ||||||| ||||||||||
Sbjct 1170 GGTGGATTTTATGCCTGCAACCGGTATGAGGCGGCTAAGAAAGAAGGGTTGTATGATGAG 1229
Query 1069 ACAGAGAGGAGGAGAGAGATGGCCAAAAATTCGCTAGAGAGATACACACACTATTATGAA 1128
| || |||||| |||||||||| ||||||||||||||||||||||| || || ||||||
Sbjct 1230 GCTGAAAGGAGGCGAGAGATGGCAAAAAATTCGCTAGAGAGATACACTCATTACTATGAA 1289
Query 1129 CGCTGGGCAAGCAATCAAACGTCGAGGCAAAAGGCTATGGCTGATCTGCAGCAAGCGCAG 1188
|||||||||||||||||| |||||||||||| ||||||| ||||||||| || |||
Sbjct 1290 CGCTGGGCAAGCAATCAAGTGTCGAGGCAAAAAGCTATGGGGGATCTGCAGAAAATGCA- 1348
Query 1189 ATGCAGA-AT-CTTGAGAAGCTTAGTGATAAACAGTGCACACCAGAGTCTCAGCTCAAAT 1246
|| |||| | |||| |||||||||||| | ||||||||||||||| ||||||||||| |
Sbjct 1349 AT-CAGAGAAGCTTGGGAAGCTTAGTGACATACAGTGCACACCAGAATCTCAGCTCAAGT 1407
Query 1247 TCATTTTAGAAGCTTGGCTTCAGATCATCGAATGTAGGCGAGT-CTTGAAATGGACTTAT 1305
| || | |||||||||| |||||||| ||||| || || || ||| |||||||| |||
Sbjct 1408 TTATCGCACAAGCTTGGCTCCAGATCATTGAATGCAGACGGGTACTT-AAATGGACATAT 1466
Query 1306 GCATATGGATACTACCTACCTGAGCATGAACATGCCAAACGACAATTTTTCGAGTATTTG 1365
|||||||||||||| ||||| || || ||||| || ||||||||||| |||||||||
Sbjct 1467 GCATATGGATACTATCTACC--AG-AT---CATGCTAAGCGACAATTTTTTGAGTATTTG 1520
Query 1366 CAAGGTGAAGCTGAGTCAGGTTTAGAGAGGCTCCATCAA-TGCGTAGAGAAAGACTT-G- 1422
||||| || |||||||||||||| ||||||||||| ||| ||||||||||| || || |
Sbjct 1521 CAAGGGGAGGCTGAGTCAGGTTTGGAGAGGCTCCA-CAAATGCGTAGAGAAGGATTTAGA 1579
Query 1423 GTTCAGTTTCTCATTGCGGAAGGTCCATCAAAAGATTTCAATGATTTCCGGACAAAACTA 1482
| | ||||| ||||| || || || ||| | || |||||| |||||||||||||| ||
Sbjct 1580 GGT--GTTTCAAATTGCTGACGGCCCTTCAGATGAATTCAATCATTTCCGGACAAAATTA 1637
Query 1483 GCTGGTTTGACCAGCGTGACGAAAAAC-TACTTTGAGAATTTGGTGAAAGCTCTGGAGAA 1541
||||||| |||||| | || |||||| ||||| || ||| |||||||||||||||||||
Sbjct 1638 ACTGGTTTAACCAGCATAAC-AAAAACCTACTTCGAAAATCTGGTGAAAGCTCTGGAGAA 1696
Query 1542 CGGTCTTGCTGATGTAGAC-TCACATGCGGCTTGCAGCAGCAAATCAACAAGCTCTAAAT 1600
|||||||||||||| || | ||| || ||| ||||||||| || ||| ||||||||
Sbjct 1697 TGGTCTTGCTGATGTGGATAT-ACAAGCTGCT---AGCAGCAAACCAGCAAACTCTAAAT 1752
Query 1601 CAACAGGTTGCA-GTAGCAAAACAAGA-GGTAAAGGCAAAGGAAGTTCCAGAACTGGTGG 1658
| | | ||| | | ||||| | || ||||| |||||||| |||| || ||| ||
Sbjct 1753 CGTC---TAGCAAG-A-CAAAAGGCGGTGGGAAAGGTAAAGGAAGCTCCAAAAATGGCGG 1807
Query 1659 ATCCAGCAGAAACCCAGATGACAA 1682
|||||||||||||||||||||||
Sbjct 1808 GTCCAGCAGAAACCCAGATGACAA 1831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76485211960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5