BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31530.1
Length=1934
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320901 jgi|Araly1|320901|fgenesh1_pm.C_scaffold_4000958 2457 0.0
> Ahg320901 jgi|Araly1|320901|fgenesh1_pm.C_scaffold_4000958
Length=1704
Score = 2457 bits (1330), Expect = 0.0
Identities = 1534/1631 (94%), Gaps = 20/1631 (1%)
Strand=Plus/Plus
Query 154 TCAACCCAGAAAATGCCTTACTACGAATTTGAATATGTCAAGAACGAGACAAGGGCATTC 213
|||| |||| ||||| ||||||| |||||||||| ||||||| |||| |||| ||||
Sbjct 87 TCAATCCAGGAAATGTCTTACTATGAATTTGAATTTGTCAAG---GAGAGAAGGACATTT 143
Query 214 TATACAAATGAACAGAAGACATCTTC-TTATGAAAGAAAGGAAGAGTTTTTCGATAAATT 272
||| || |||||||||||||||| || |||| ||||||||||||||||||||||||||||
Sbjct 144 TATTCAGATGAACAGAAGACATC-TCTTTATAAAAGAAAGGAAGAGTTTTTCGATAAATT 202
Query 273 ATTCCGATAAGTTCAGAGATGATTCTATGAGTAGCGAGGAGATGCATACAGATGCTTTGG 332
||||||||||| ||||||||||||||||||| || |||||||||||| |||||||||||
Sbjct 203 ATTCCGATAAGCTCAGAGATGATTCTATGAGCAGTGAGGAGATGCATGTAGATGCTTTGG 262
Query 333 ATGTGGAGATTATTCCGCCAGATTCACAGGACATTCGTAATTCACAGAACTCTGCTGTCT 392
||||||||||| ||| |||||||||||||||| || || ||||| ||| ||| ||||||
Sbjct 263 ATGTGGAGATTGCTCCACCAGATTCACAGGACAGTCATATTTCACGGAATTCTACTGTCT 322
Query 393 CCAACACACTACAGGATGATAGGCCAAAGTCTTTTAGAAATAGGTTTCTTGATTTTGTTC 452
||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 CCAGCACTCTACAGGAAGATAGGCCAAAGTCTTTTAGAAATAGGTTTCTTGATTTTGTTC 382
Query 453 GGATAAGTTCAGTACTCAATACTGCAGCAGAAAGATTCTTTAAGAGCGAGATAAGGAGGA 512
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 383 GCATAAGTTCAGTACTCAATACTGCAGCTGAAAGATTCTTTAAGAGCGAGATAAGGAGGA 442
Query 513 GGTTGTTTGTAACGGCTGTTTTGCTTGTACTTAGCCGTGTTGGATATTTTATACCTTTAC 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 GGTTGTTTGTAACGGCTGTTTTGCTTGTACTTAGCCGTGTTGGATATTTTATACCTTTAC 502
Query 573 CTGGATTCGACAGAAGATTAATACCTCAAGATTACCTTAGCTTTGTCTCGGGTTCTGTTG 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 503 CTGGATTCGACAGAAGATTAATACCTCAAGATTACCTTAGCTTTGTCTCGGGTTCTG-TG 561
Query 633 AGG-AACTG-GGTGAGTTTGGAGCAGAGATCAAGCTTTCGCTCTTCCAGCTTGGGCTCAG 690
|| | || | | ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 562 -GGTGAGTGTTCTCATTTTGGAGCAGAGATCAAGCTTTCCCTCTTCCAGCTTGGGCTCAG 620
Query 691 TCCACAAATAATAGCATCCATAATTATGCAGGTGCTTTGTCACGTTCTTCCATCCTTGGT 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 TCCACAAATAATAGCATCCATAATTATGCAGGTGCTTTGTCACGTTCTTCCATCCTTGGT 680
Query 751 GAAACTGCGAAAGGAAGGCTTAGATGGTCACGAGAAGATCAAGAGTTATA----TATGGT 806
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 681 GAAACTGCGAAAGGAAGGCTTAGATGGTCACGAGAAGATCAAGAGTTATATGTGTATGGT 740
Query 807 GGCTATCGTTTTTCTTCGCTATAGTGGAAGCATTAGTGGTGGCTTACACTTCTCTTCAAT 866
||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 741 GGCTATCGTTTCTCTTTGCTATAGTGGAAGCATTAGTGGTGGCTTACACTTCACTTCAAT 800
Query 867 ATTCAGTTTTTGCAGCCACTGCCCAGGTCAAGCATGTGATGATGACATCATCTCTGCTAG 926
||||||||||||||||||||| || | | ||||| ||||||||| ||||| ||||||
Sbjct 801 ATTCAGTTTTTGCAGCCACTG-CC----C-A-CATGTAATGATGACAGCATCTTTGCTAG 853
Query 927 TCTGTGGTGCAATGACAATGACGTGGCTCTGTGATACAATATCAGAATCTGGATTTGGTC 986
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 854 TCTGTGGTGCAATGACAATGACGTGGCTGTGTGATACAATATCAGAATCCGGATTTGGTC 913
Query 987 ATGGCTCATCTCTGATTATTTGTGTGGGAATATTGACGGGCTACACAGAGACTTTACACA 1046
|||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 914 ATGGGTCATCTCTAATTATTTGTGTGGGAATATTGACGGGCTACACAGAGACCTTACACA 973
Query 1047 AGATGCTCAATCAAATCTCAGGAAGTTTCTCGAACTGGTTGCCTTACTTGTTAGGCTTGC 1106
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 974 AGATGCTGAATCAAATCTCAGGAAGTTTCTCGAATTGGTTGCCTTACTTGTTAGGCTTGC 1033
Query 1107 TGGGCATTTTTACCGTAGTAACTATGTTCGCTGTTGTTGTTACTGAGGGCTGCAGGAAGA 1166
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1034 TGGGCATTTTTACGGTAGTAACTATGTTCGCGGTTGTTGTTACTGAGGGCTGCAGGAAGA 1093
Query 1167 TTAAACTACAATATTATGGTTTTAAACTTGCTTCTGCTTCGAGAGAAGGTTCTCCAATAA 1226
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 TAAAACTACAATATTATGGTTTTAAACTTGCTTCTGCTTCGAGAGAAGGTTCTCCAATAA 1153
Query 1227 CAGAGGTGGAGCCGTACATACCTTTTAACATCAACCCGGCTGGAATGCAACCTGTTCTCA 1286
| ||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 1154 CCGAGGTGGAGCCTTACATACCTTTTAACATTAACCCAGCAGGAATGCAACCTGTTCTCA 1213
Query 1287 CAACCACATATCTTTTGGCATTCCCCAGCATTCTTGCAAGTATTCTGGGTTCACCTTTCT 1346
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1214 CAACCACATATCTCTTGGCATTCCCCAGCATTCTTGCTAGTATTCTGGGTTCACCTTTCT 1273
Query 1347 TGCTAAACATGAAGGAGATATTAAACCCTGAAAGCACAGTTGGAGCACCACCTTGGGTCT 1406
|| || || ||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 1274 TGGTACACGTGAAGGAGATATTAAACCCGGAAAGCACGGTTGGAGCACCGCCTTGGGTCT 1333
Query 1407 ATTACTCAATATATGCGTTTTTCGTCTTTCTCTTCAACATATTTGACATTGCCAACTTGC 1466
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1334 ATTACTCAATATATGCGTTTTTCGTCTTTCTCTTCAACATCTTTGACATTGCCAACTTGC 1393
Query 1467 CAAAGGAAATAGCGGATTATTTAAACAAAATGGGGGCGAGAATACCGAACATAAAGCCTG 1526
||||||||||||| |||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 1394 CAAAGGAAATAGCCGATTATTTAAACAAAATGGGAGCGAGAATACCCAATATAAAGCCTG 1453
Query 1527 GGAAAGCCACAATCGAGTACTTAACGAAGATACAAGCATCAACTAGGTTTTGGGGTGGCC 1586
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1454 GGAAAGCCACGATCGAGTACTTAACGAAGATACAAGCATCAACTAGGTTTTGGGGTGGCC 1513
Query 1587 TTCTGTTGAGCTTTTTGGCAACAGCTTCTACTGTACTTGACCACTATCTACGCAGCATCA 1646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1514 TTCTGTTGAGCTTTTTGGCAACAGCTTCTACTGTACTTGACCACTATCTACGCAGCATCA 1573
Query 1647 ATCAAGGCTTTTCTATCGGATTTACATCTGTTTTGATCATTGTTGGTTCCATTATTGAAC 1706
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1574 ATCAAGGCTTTTCTATCGGATTTACATCGGTTTTGATCATCGTTGGTTCCATTATTGAAC 1633
Query 1707 TCAGAAGATCTTACCATGCCTACAATGTAATGCCGAGTTTAAGCAAAGCGTTAAAGAGAT 1766
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1634 TCAGAAGATCTTACCATGCCTACAATGTAATGCCTAGTTTAAGCAAAGCGTTGAAGAGAT 1693
Query 1767 ATGGCGTATAA 1777
|||| ||||||
Sbjct 1694 ATGGTGTATAA 1704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72676187460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5