BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G31540.1 Length=1199 Score E Sequences producing significant alignments: (Bits) Value Ahg482080 jgi|Araly1|482080|fgenesh2_kg.4__1140__AT2G31540.1 1855 0.0 Ahg475390 jgi|Araly1|475390|fgenesh2_kg.2__520__AT1G58430.1 1216 0.0 Ahg344029 jgi|Araly1|344029|fgenesh1_pg.C_scaffold_4000371 1094 0.0 > Ahg482080 jgi|Araly1|482080|fgenesh2_kg.4__1140__AT2G31540.1 Length=1181 Score = 1855 bits (1004), Expect = 0.0 Identities = 1125/1184 (95%), Gaps = 6/1184 (1%) Strand=Plus/Plus Query 19 aaaTGTCGACTTCTAAAGCCATAACCTTAACTCTCTTCATTGCAACAACATTACTAGCGC 78 ||||||||||||||||| |||||||||||||||| || || ||||||||| || | ||| Sbjct 1 AAATGTCGACTTCTAAAACCATAACCTTAACTCTTTTTATCGCAACAACACTATTCGCGT 60 Query 79 CCTGCAACGCAGCCGCAAACGCAACAACGAAGCCGCTCTTCCCAGCGATTCTAATCTTCG 138 |||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 61 CCTGCAACGCAGTCGCAAACGCAACAACAAAACCGCTCTTCCCAGCGATTCTAATCTTCG 120 Query 139 GTGATTCAACCGTCGATACAGGAAACAACAACTACCCTTTACCAACAATCTTCAGAGCTG 198 | |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 121 GCGATTCAACCGTCGACACAGGCAACAACAACTACCCTTTACCAACAATCTTCAGAGCTG 180 Query 199 AACACTTTCCTTACGGCATGGATCTTCCAGACGGAAAAGCTAACGGAAGATTCTCAAACG 258 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 181 AACACTTTCCTTACGGCATGGATCTTCCAGATGGCAAAGCTAACGGAAGATTCTCAAACG 240 Query 259 GAAAACTTATCTCCGACATAATCGCAACCAAACTCAACATCAAAGAGTTTATTCCTCCTT 318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GAAAACTTATCTCCGACATAATCGCAACCAAACTCAACATCAAAGAGTTTATTCCTCCTT 300 Query 319 TCTTACAACCAAATCTCTCCGACCAAGACATTCTAACCGGAGTCTGTTTCGCATCAGCTG 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TCTTACAACCAAATCTCTCCGACCAAGACATTCTAACCGGAGTCTGTTTCGCATCAGCTG 360 Query 379 GTGCCGGTTACGACGACCTGACCAGTCTCTCGACACAAGCCATTCGTGTCTCGGAACAAC 438 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 361 GTGCCGGTTACGACGACCTAACCAGTCTCTCCACACAAGCCATTCGTGTCTCGGAACAAC 420 Query 439 CAAACATGTTCAAGAGTTACATTGCTCGTCTCAAAGGTATCGTGGGAGACAAGAAAGCGA 498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 421 CAAACATGTTCAAGAGTTACATTGCTCGTCTCAAAGGTATCGTGGGAGACAAGAAAGCAA 480 Query 499 TGGAGATCATAAACAATGCCTTCGTGGTTGTGAGTGCAGGGCCTAACGATTTCATTTTGA 558 ||||||||||||||||||| || |||||| | |||||||||||||||||||||||||||| Sbjct 481 TGGAGATCATAAACAATGCTTTAGTGGTTATCAGTGCAGGGCCTAACGATTTCATTTTGA 540 Query 559 ACTATTACGAAATTCCCTCAAGGCGTCTCGAGTATCCTTTCATTTCTGGTTACCAAGACT 618 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 ACTATTACGATATTCCCTCAAGGCGTCTCGAGTATCCTTTCATTTCTGGTTACCAAGACT 600 Query 619 TTATTCTTAAGAGGCTTGAAAATTTCGTGCGGGAGCTTTACAGTTTAGGTGTCC-GGAAT 677 |||||||||| |||||||||||| |||||||||||||||||||| ||||| ||| ||||| Sbjct 601 TTATTCTTAAAAGGCTTGAAAATATCGTGCGGGAGCTTTACAGTCTAGGT-TCCCGGAAT 659 Query 678 GTTTTGGTTGGAGGTTTACCGCCAATGGGGTGTTTACCGATCCATATGACTGCTAAATTC 737 |||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||| Sbjct 660 ATTTTGGTTGGAGGTTTGCCGCCAATGGGGTGTTTACCGATCCACATGACTGTTAAATTC 719 Query 738 CGCAACATTTTTAGATTCTGCTTGGAACACCATAACAAAGACTCTGTTTTATACAATGAG 797 |||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||| || Sbjct 720 CGCAACGTTTTTAGATTCTGCTTGGAACAACATAACAGAGACTCTGTTTTATACAATCAG 779 Query 798 AAACTTCAGAATCTCTTGCCCCAAATCGAAGCATCTCTTCCAGGAAGCAAATTCCTTTAC 857 |||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||| Sbjct 780 AAACTTCAGAATCTCTTGCCCCAACTCGAAGCATCTCTTAAAGGAAGCAAAATCCTTTAC 839 Query 858 GCCGATGTCTATAATCCTATGATGGAGATGATCCAAAACCCTAGCAAATACGGGTTCAAA 917 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 840 GCCGATGTCTATAATCCTATGATGGAGATGATGCAAAACCCTAGCAAATACGGGTTCAAA 899 Query 918 GAGACGAAGAGAGGATGTTGTGGAACAGGGTTCCTGGAGACGAGCTTCATGTGTAATGTT 977 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 900 GAGACGAAGAGAGGATGTTGTGGAACAGGGTTCTTGGAGACGAGCTTCATGTGTAATGTT 959 Query 978 TTTTCTCCTGTGTGTCAAAATCGGTCGGAGTTTTTGTTCTTTGACTCGATTCATCCATCG 1037 || |||||| |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 960 TTCTCTCCTACGTGTCAGAATCGGTCGGAGTTTTTGTTCTTTGACTCGATTCATCCATCG 1019 Query 1038 GAAGCTACCTATAATGTCATAGGCAATCTTCTGGATCCTCTA-ATTCGTGGAAAGTTCCA 1096 ||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||| Sbjct 1020 GAAGCTACCTATAATGTCATAGGCAATCTTCTGGATCCTA-AGATTCGTGGGAAGTTCCA 1078 Query 1097 GGCTTAAGTCATCACGAGTTGCAAAACTGACACAAT-TAATTTTCTTGTTTCTTTAATGC 1155 |||||||||||||||||||||||||||||||||||| | ||||||||||||| ||| ||| Sbjct 1079 GGCTTAAGTCATCACGAGTTGCAAAACTGACACAATGTTATTTTCTTGTTTCATTA-TGC 1137 Query 1156 GACTAGTTGTGGACTTTCGTTTATGAATCAAATGTAACTTTGGC 1199 ||||| ||||||||||| ||||||||||||| |||||| ||||| Sbjct 1138 GACTATTTGTGGACTTTTGTTTATGAATCAAGTGTAACATTGGC 1181 > Ahg475390 jgi|Araly1|475390|fgenesh2_kg.2__520__AT1G58430.1 Length=1276 Score = 1216 bits (658), Expect = 0.0 Identities = 1026/1200 (86%), Gaps = 40/1200 (3%) Strand=Plus/Plus Query 18 aaaaTGTCGACTTCTAA-AGCCATAACCTTAACTCTCTTCATTGCAACAACATTACTAGC 76 ||||||||| ||||||| | |||||||||| ||||||||||| ||| ||| |||| || Sbjct 82 AAAATGTCGGCTTCTAATA-CCATAACCTTCACTCTCTTCATCACAATAACGCTACTCGC 140 Query 77 GCCCTGCAACGCAGCCGCAAACG-CAACAACG-AAGCCGCTCTTCCCAGCGATTCTAATC 134 | ||||||||||| ||||||| | ||| |||| || ||||| || ||||||||||||||| Sbjct 141 GTCCTGCAACGCATCCGCAAAGGCCAA-AACGCAA-CCGCTTTTTCCAGCGATTCTAATC 198 Query 135 TTCGGTGATTCAACCGTCGATACAGGAAACAACAACTACCCTTTACCAACAATCTTCAGA 194 ||||| |||||||| ||||| ||||| ||||| |||||||||| || ||||||||| ||| Sbjct 199 TTCGGCGATTCAACTGTCGACACAGGCAACAATAACTACCCTTCACAAACAATCTTTAGA 258 Query 195 GCTGAACACT-TTCCTTACGGCATGGATCTTCCAGACGGA-AAAGCTAACGGAAGATTCT 252 ||| |||| | |||| ||||| || ||||| ||| || | | ||||||||||||||| Sbjct 259 GCTAAACA-TGTTCCGTACGGTATTGATCTCCCAAAC-CACTCACCTAACGGAAGATTCT 316 Query 253 CAAACGGAAAACTTATCTCCGACATAATCGCAACCAAACTCAACATCAAAGAGTTTATTC 312 ||||||||||| || |||| |||||||||||||||||||||||||||||| ||||| ||| Sbjct 317 CAAACGGAAAAATTTTCTCGGACATAATCGCAACCAAACTCAACATCAAACAGTTTGTTC 376 Query 313 CTCCTTTCTTACAACCAAATCTCTCCGACCAAGACATTCTAACCGGAGTCTGTTTCGCAT 372 |||| |||||||||||||||||| |||||||||| ||| |||||||||||||||| |||| Sbjct 377 CTCCCTTCTTACAACCAAATCTCACCGACCAAGAAATTGTAACCGGAGTCTGTTTTGCAT 436 Query 373 CAGCTGGTGCCGGTTACGACGACCTG-ACCAGTCTCTCGACACAAGCCATTCGTGTCTCG 431 |||||||||| |||||||| || | | ||||||||| ||||||||||||||||||||||| Sbjct 437 CAGCTGGTGCGGGTTACGATGA-CAGTACCAGTCTCACGACACAAGCCATTCGTGTCTCG 495 Query 432 GAACAACCAAACATGTTCAAGAGTTACATTGCTCGTCTCAAAG-GTATCGTGGGAGACAA 490 ||||||||||| |||||||||||||||||||||||||| ||| ||||||| || ||||| Sbjct 496 GAACAACCAAATATGTTCAAGAGTTACATTGCTCGTCT-TAAGAGTATCGTAGGTGACAA 554 Query 491 GAAAGCGATGGAGATCATAAACAATGCCTTCGTGGTTGTGAGTGCAGGGCCTAACGATTT 550 |||||| ||| |||||||||||||||| || |||||||| |||||||||||||| ||||| Sbjct 555 GAAAGCCATGAAGATCATAAACAATGCTTTGGTGGTTGTTAGTGCAGGGCCTAATGATTT 614 Query 551 CATTTTGAACTATTACGAAATTCCCTCAAGGCGTCTCGAGTATCCT-TTCATTTCTGGTT 609 ||| ||||| |||||||| |||||||| |||||| || ||||||| | ||||||| || Sbjct 615 CATCTTGAATTATTACGATGTTCCCTCATGGCGTCGCGTGTATCCTAGT-ATTTCTGATT 673 Query 610 ACCAAGACTTT-ATTCTTAAGAGGCTTGAA-AATTTCGTGCGGGAGCTTTACAGTTTAGG 667 ||||||| ||| | ||||| |||||| || |||||||||| ||| ||||||||| |||| Sbjct 674 ACCAAGA-TTTCGTGCTTAATAGGCTT-AACAATTTCGTGCAGGAACTTTACAGTCTAGG 731 Query 668 -TGTCCGGAATGTTTTGGTTGGAGGTTTACCGCCAATGGGGTGTTTACCGATCCATATGA 726 || |||||| || |||||||||| |||||||||||||| ||||||||||| || |||| Sbjct 732 TTG-CCGGAAAATTCTGGTTGGAGGGTTACCGCCAATGGGATGTTTACCGATTCAAATGA 790 Query 727 CTGCTAAATTCCGCAACATTTTTAGATTCTGCTTGGAACACCATAACAAAGACTCTGTTT 786 ||||| ||||||||||| | | || || ||||||||||| | |||| ||||||||||| Sbjct 791 CTGCTCAATTCCGCAACGTCCTAAGGTTTTGCTTGGAACAAGAGAACAGAGACTCTGTTT 850 Query 787 TATACAATGAGAAACTTCAGAATCTCTTGCCCCAAATCGAAGCATCTCTTCCAGGAAGCA 846 |||||||| ||||||||||||| ||||| || ||||||| ||||||| | ||||||| Sbjct 851 TATACAATCAGAAACTTCAGAAGCTCTTATATCAGATCGAAGTATCTCTTACGGGAAGCA 910 Query 847 A-ATTCCTTTACGCCGATGTCTATAATCCTATGATGGAGATGATCCAAAACCCTAGCAAA 905 | | |||||||| | |||||||| | ||||||||||||||||||||||||||||||||| Sbjct 911 AGA-TCCTTTACTCTAATGTCTATGACCCTATGATGGAGATGATCCAAAACCCTAGCAAA 969 Query 906 TACGGGTTCAAAGAGACGAAGAGAGGATGTTGTGGAACAGGGTTCCTGGAGACGAGCTTC 965 |||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct 970 TACGGGTTTAAAGAGACGAGGAGAGGATGTTGTGGAACAGGGTTCTTGGAGACGAGCTTC 1029 Query 966 ATGTGTAATGTTTTTTCTCCTGTGTGTCAAAATCGGTCGGAGTTTTTGTTCTTTGACTCG 1025 |||||||||| || |||||| ||||||| ||||| ||||||||| |||||||||||||| Sbjct 1030 ATGTGTAATGCTTATTCTCCCATGTGTCAGAATCGCTCGGAGTTTCTGTTCTTTGACTCG 1089 Query 1026 ATTCATCCATCGGAAGCTACCTATAATGT-CATAGGCAATCTTCTGGATCCTCTA-ATTC 1083 ||||| ||||| ||||||||||||||| | ||| |||||| |||||||| || | |||| Sbjct 1090 ATTCACCCATCAGAAGCTACCTATAAT-TACATTGGCAATGTTCTGGATACTA-AGATTC 1147 Query 1084 GTGGAAAG-TTCCAGGCTTAAGTCATCACGAGTTGCAAA-ACTGACACAATTAATTTTCT 1141 |||| | || |||||||||| ||||||| || |||| | ||| |||| ||| | || Sbjct 1148 GTGGGTGGCTTA-AGGCTTAAGTTATCACGATTTTCAAAGATTGA-ACAA--AATAT-CT 1202 Query 1142 TGTTTCTTTAATGCGACTAGTTGTGGACTTTCGTTTATGAATCAA--ATGTAACTTTGGC 1199 ||||| | |||||||||| ||||||||| | |||| | |||||| || |||||||||| Sbjct 1203 -GTTTCAT-AATGCGACTATTTGTGGACTAT-GTTTGTTAATCAACTATATAACTTTGGC 1259 > Ahg344029 jgi|Araly1|344029|fgenesh1_pg.C_scaffold_4000371 Length=1080 Score = 1094 bits (592), Expect = 0.0 Identities = 916/1069 (86%), Gaps = 35/1069 (3%) Strand=Plus/Plus Query 21 ATGTCGACTTCTAAAG-CCATAACCTTAACTCTCTTCATTGCAACAACATTACTAGCGCC 79 ||||||||||| ||| |||||||||| ||||||||||| ||||| || |||| || | Sbjct 1 ATGTCGACTTC-CAAGACCATAACCTTCACTCTCTTCATAGCAAC-AC--TACTCTCGTC 56 Query 80 CTGCAACGCAGCCGCAAACGCAACAACG-AAGCCGCTCTTCCCAGCGATTCTAATCTTCG 138 |||||| |||||||||||||| |||||| || ||||| |||||||||||||||||||| | Sbjct 57 CTGCAAAGCAGCCGCAAACGCTACAACGCAA-CCGCTATTCCCAGCGATTCTAATCTTTG 115 Query 139 GTGATTCAACCGTCGATACAGGAAACAACAACTACC-CTTTACCAACAATCTTCAGAGCT 197 | || ||||| ||||| ||||| ||||||||||||| | | || ||||||||||| |||| Sbjct 116 GCGACTCAACAGTCGACACAGGCAACAACAACTACCAC-TCACAAACAATCTTCAAAGCT 174 Query 198 GAACACT-TTCCTTACGGCATGGATCTTCCAGACGGA-AAAGCTAACGGAAGATTCTCAA 255 |||| | ||||||| || || ||||| ||| || | ||||||| ||||||||| ||| Sbjct 175 AAACA-TCTTCCTTATGGAATTGATCTCCCAAAC-CACAAAGCTAGTGGAAGATTCACAA 232 Query 256 A-CGGAAAACT-TATCTCCGACATAATCGCAACCAAACTCAACATCAAAGAGTTTATTCC 313 | |||||| | | ||||||||||||||||||| ||||||||||||||| ||||| |||| Sbjct 233 ATGGGAAAA-TCT-TCTCCGACATAATCGCAACAAAACTCAACATCAAACAGTTTGTTCC 290 Query 314 TCCTTTCTTACAACCAAATCTCTCCGACCAAGACATTCTAACCGGAGTCTGTTTCGCATC 373 ||| |||||||||||||||||||| |||||||| ||| ||||||| |||||||| ||||| Sbjct 291 TCCCTTCTTACAACCAAATCTCTCTGACCAAGAAATTGTAACCGGGGTCTGTTTTGCATC 350 Query 374 AGCTGGTGCCGGTTACGACGACCTG-ACCAGTCTCTCGACACAAGCCATTC-GTGTCTCG 431 ||| ||||| |||||||| |||| | |||||||||||||| |||| || || |||||||| Sbjct 351 AGCCGGTGCGGGTTACGATGACC-GTACCAGTCTCTCGACTCAAG-CAATCGGTGTCTCG 408 Query 432 GAACAACCAAACATGTTCAAGAGTTACATTGCTCGTCTCAAAGGTATCGTGGGAGACAAG 491 || |||||||| |||||||||||||| ||||||||||| ||| ||||||| ||||||||| Sbjct 409 GACCAACCAAAGATGTTCAAGAGTTATATTGCTCGTCTTAAAAGTATCGTAGGAGACAAG 468 Query 492 AAAGCGATGGAGATCATAAACAATGCCTTCGTGGTTGTGAGTGCAGGGCCTAACGATTTC 551 ||||| |||||||||||||||||||| || |||||| | |||||||||||||||||||| Sbjct 469 AAAGCTATGGAGATCATAAACAATGCTTTGGTGGTTATAAGTGCAGGGCCTAACGATTTT 528 Query 552 ATTTTGAACTATTACGAAATTCCCTCAAGGCGTCTCGAGTATCCTTTCATTTCTGGTTAC 611 || ||||| ||||| || |||| ||||||||||| |||| |||| ||||||||||||| Sbjct 529 ATCTTGAATTATTATGATTTTCCTTCAAGGCGTCTTGAGTTTCCTCACATTTCTGGTTAC 588 Query 612 CAAGACTTTATTCTTAAGAGGCTTGAAAATTTCGTGCGGGAGCTTTACAGTTTAGG-TGT 670 ||||||||| | ||||| |||||||| ||| ||||||||||||||||||||||||| || Sbjct 589 CAAGACTTTGTGCTTAAAAGGCTTGACAATCTCGTGCGGGAGCTTTACAGTTTAGGTTG- 647 Query 671 CCGGAATGTTTTGGTTGGAGGTTTACCGCCAATGGGGTGTTTACCGATCCATATGACTGC 730 |||||| || |||| |||||||||||||| ||||| ||||||||||| || |||||||| Sbjct 648 CCGGAAAATTATGGTAGGAGGTTTACCGCCGATGGGTTGTTTACCGATTCAGATGACTGC 707 Query 731 TAAATTCCGCAACATTTTTAGATTCTGCTTGGAACACCATAACAAAGACTCTGTTTTATA 790 ||||||||||||| | | || |||||||||||||| | ||| ||||||||| || || Sbjct 708 TAAATTCCGCAACGCTCTAAGGTTCTGCTTGGAACAAGAGAACCGAGACTCTGTCTTGTA 767 Query 791 CAATGAGAAACTTCAGAATCTCTTGCCCCAAATCGAAGCATCTCTTCCAGGAAGCAA-AT 849 |||| ||||||||||||| || || || || ||||||||||||||| |||||||||| | Sbjct 768 CAATCAGAAACTTCAGAAGCTATTACCTCAGATCGAAGCATCTCTTACAGGAAGCAAGA- 826 Query 850 TCCTTTAC-GCCGATGTCTATAATCCTATGATGGAGATGATCCAAAACCCTAGCAAATAC 908 |||||||| | |||||||| | || |||||||| ||||| |||||||||||||||||| Sbjct 827 TCCTTTACTG-TAATGTCTATGACCCGATGATGGACATGATGCAAAACCCTAGCAAATAC 885 Query 909 GGGTTCAAAGAGACGAAGAGAGGATGTTGTGGAACAGGG--TTCCTGGAGACGAGCTTCA 966 ||||| |||||||||| |||||||||||||||||||||| || ||||||||||||||| Sbjct 886 GGGTTTAAAGAGACGAGGAGAGGATGTTGTGGAACAGGGCATT--TGGAGACGAGCTTCA 943 Query 967 TGTGTAATGTTTTTTCTCCTGTGTGTCA-AAATCGGTCGGAGTTTTTGTTCTTTGACTCG 1025 ||||||||| ||||||||| |||| | |||| || ||||||||||||||||||||| Sbjct 944 TGTGTAATGCTTTTTCTCCAACGTGT-AGGAATCACTCCGAGTTTTTGTTCTTTGACTCG 1002 Query 1026 ATTCATCCATCGGAAGCTACCTATAA-TGTCATAGGCAATCTTCTGGAT 1073 |||||||||||||||||||||||||| | | || |||||| |||| ||| Sbjct 1003 ATTCATCCATCGGAAGCTACCTATAACTAT-ATGGGCAATTTTCTAGAT 1050 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44756304558 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5