BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31540.1
Length=1199
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482080 jgi|Araly1|482080|fgenesh2_kg.4__1140__AT2G31540.1 1855 0.0
Ahg475390 jgi|Araly1|475390|fgenesh2_kg.2__520__AT1G58430.1 1216 0.0
Ahg344029 jgi|Araly1|344029|fgenesh1_pg.C_scaffold_4000371 1094 0.0
> Ahg482080 jgi|Araly1|482080|fgenesh2_kg.4__1140__AT2G31540.1
Length=1181
Score = 1855 bits (1004), Expect = 0.0
Identities = 1125/1184 (95%), Gaps = 6/1184 (1%)
Strand=Plus/Plus
Query 19 aaaTGTCGACTTCTAAAGCCATAACCTTAACTCTCTTCATTGCAACAACATTACTAGCGC 78
||||||||||||||||| |||||||||||||||| || || ||||||||| || | |||
Sbjct 1 AAATGTCGACTTCTAAAACCATAACCTTAACTCTTTTTATCGCAACAACACTATTCGCGT 60
Query 79 CCTGCAACGCAGCCGCAAACGCAACAACGAAGCCGCTCTTCCCAGCGATTCTAATCTTCG 138
|||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 61 CCTGCAACGCAGTCGCAAACGCAACAACAAAACCGCTCTTCCCAGCGATTCTAATCTTCG 120
Query 139 GTGATTCAACCGTCGATACAGGAAACAACAACTACCCTTTACCAACAATCTTCAGAGCTG 198
| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 GCGATTCAACCGTCGACACAGGCAACAACAACTACCCTTTACCAACAATCTTCAGAGCTG 180
Query 199 AACACTTTCCTTACGGCATGGATCTTCCAGACGGAAAAGCTAACGGAAGATTCTCAAACG 258
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 181 AACACTTTCCTTACGGCATGGATCTTCCAGATGGCAAAGCTAACGGAAGATTCTCAAACG 240
Query 259 GAAAACTTATCTCCGACATAATCGCAACCAAACTCAACATCAAAGAGTTTATTCCTCCTT 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAAACTTATCTCCGACATAATCGCAACCAAACTCAACATCAAAGAGTTTATTCCTCCTT 300
Query 319 TCTTACAACCAAATCTCTCCGACCAAGACATTCTAACCGGAGTCTGTTTCGCATCAGCTG 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCTTACAACCAAATCTCTCCGACCAAGACATTCTAACCGGAGTCTGTTTCGCATCAGCTG 360
Query 379 GTGCCGGTTACGACGACCTGACCAGTCTCTCGACACAAGCCATTCGTGTCTCGGAACAAC 438
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 361 GTGCCGGTTACGACGACCTAACCAGTCTCTCCACACAAGCCATTCGTGTCTCGGAACAAC 420
Query 439 CAAACATGTTCAAGAGTTACATTGCTCGTCTCAAAGGTATCGTGGGAGACAAGAAAGCGA 498
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 421 CAAACATGTTCAAGAGTTACATTGCTCGTCTCAAAGGTATCGTGGGAGACAAGAAAGCAA 480
Query 499 TGGAGATCATAAACAATGCCTTCGTGGTTGTGAGTGCAGGGCCTAACGATTTCATTTTGA 558
||||||||||||||||||| || |||||| | ||||||||||||||||||||||||||||
Sbjct 481 TGGAGATCATAAACAATGCTTTAGTGGTTATCAGTGCAGGGCCTAACGATTTCATTTTGA 540
Query 559 ACTATTACGAAATTCCCTCAAGGCGTCTCGAGTATCCTTTCATTTCTGGTTACCAAGACT 618
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACTATTACGATATTCCCTCAAGGCGTCTCGAGTATCCTTTCATTTCTGGTTACCAAGACT 600
Query 619 TTATTCTTAAGAGGCTTGAAAATTTCGTGCGGGAGCTTTACAGTTTAGGTGTCC-GGAAT 677
|||||||||| |||||||||||| |||||||||||||||||||| ||||| ||| |||||
Sbjct 601 TTATTCTTAAAAGGCTTGAAAATATCGTGCGGGAGCTTTACAGTCTAGGT-TCCCGGAAT 659
Query 678 GTTTTGGTTGGAGGTTTACCGCCAATGGGGTGTTTACCGATCCATATGACTGCTAAATTC 737
|||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||
Sbjct 660 ATTTTGGTTGGAGGTTTGCCGCCAATGGGGTGTTTACCGATCCACATGACTGTTAAATTC 719
Query 738 CGCAACATTTTTAGATTCTGCTTGGAACACCATAACAAAGACTCTGTTTTATACAATGAG 797
|||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||| ||
Sbjct 720 CGCAACGTTTTTAGATTCTGCTTGGAACAACATAACAGAGACTCTGTTTTATACAATCAG 779
Query 798 AAACTTCAGAATCTCTTGCCCCAAATCGAAGCATCTCTTCCAGGAAGCAAATTCCTTTAC 857
|||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||
Sbjct 780 AAACTTCAGAATCTCTTGCCCCAACTCGAAGCATCTCTTAAAGGAAGCAAAATCCTTTAC 839
Query 858 GCCGATGTCTATAATCCTATGATGGAGATGATCCAAAACCCTAGCAAATACGGGTTCAAA 917
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 840 GCCGATGTCTATAATCCTATGATGGAGATGATGCAAAACCCTAGCAAATACGGGTTCAAA 899
Query 918 GAGACGAAGAGAGGATGTTGTGGAACAGGGTTCCTGGAGACGAGCTTCATGTGTAATGTT 977
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 900 GAGACGAAGAGAGGATGTTGTGGAACAGGGTTCTTGGAGACGAGCTTCATGTGTAATGTT 959
Query 978 TTTTCTCCTGTGTGTCAAAATCGGTCGGAGTTTTTGTTCTTTGACTCGATTCATCCATCG 1037
|| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TTCTCTCCTACGTGTCAGAATCGGTCGGAGTTTTTGTTCTTTGACTCGATTCATCCATCG 1019
Query 1038 GAAGCTACCTATAATGTCATAGGCAATCTTCTGGATCCTCTA-ATTCGTGGAAAGTTCCA 1096
||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||
Sbjct 1020 GAAGCTACCTATAATGTCATAGGCAATCTTCTGGATCCTA-AGATTCGTGGGAAGTTCCA 1078
Query 1097 GGCTTAAGTCATCACGAGTTGCAAAACTGACACAAT-TAATTTTCTTGTTTCTTTAATGC 1155
|||||||||||||||||||||||||||||||||||| | ||||||||||||| ||| |||
Sbjct 1079 GGCTTAAGTCATCACGAGTTGCAAAACTGACACAATGTTATTTTCTTGTTTCATTA-TGC 1137
Query 1156 GACTAGTTGTGGACTTTCGTTTATGAATCAAATGTAACTTTGGC 1199
||||| ||||||||||| ||||||||||||| |||||| |||||
Sbjct 1138 GACTATTTGTGGACTTTTGTTTATGAATCAAGTGTAACATTGGC 1181
> Ahg475390 jgi|Araly1|475390|fgenesh2_kg.2__520__AT1G58430.1
Length=1276
Score = 1216 bits (658), Expect = 0.0
Identities = 1026/1200 (86%), Gaps = 40/1200 (3%)
Strand=Plus/Plus
Query 18 aaaaTGTCGACTTCTAA-AGCCATAACCTTAACTCTCTTCATTGCAACAACATTACTAGC 76
||||||||| ||||||| | |||||||||| ||||||||||| ||| ||| |||| ||
Sbjct 82 AAAATGTCGGCTTCTAATA-CCATAACCTTCACTCTCTTCATCACAATAACGCTACTCGC 140
Query 77 GCCCTGCAACGCAGCCGCAAACG-CAACAACG-AAGCCGCTCTTCCCAGCGATTCTAATC 134
| ||||||||||| ||||||| | ||| |||| || ||||| || |||||||||||||||
Sbjct 141 GTCCTGCAACGCATCCGCAAAGGCCAA-AACGCAA-CCGCTTTTTCCAGCGATTCTAATC 198
Query 135 TTCGGTGATTCAACCGTCGATACAGGAAACAACAACTACCCTTTACCAACAATCTTCAGA 194
||||| |||||||| ||||| ||||| ||||| |||||||||| || ||||||||| |||
Sbjct 199 TTCGGCGATTCAACTGTCGACACAGGCAACAATAACTACCCTTCACAAACAATCTTTAGA 258
Query 195 GCTGAACACT-TTCCTTACGGCATGGATCTTCCAGACGGA-AAAGCTAACGGAAGATTCT 252
||| |||| | |||| ||||| || ||||| ||| || | | |||||||||||||||
Sbjct 259 GCTAAACA-TGTTCCGTACGGTATTGATCTCCCAAAC-CACTCACCTAACGGAAGATTCT 316
Query 253 CAAACGGAAAACTTATCTCCGACATAATCGCAACCAAACTCAACATCAAAGAGTTTATTC 312
||||||||||| || |||| |||||||||||||||||||||||||||||| ||||| |||
Sbjct 317 CAAACGGAAAAATTTTCTCGGACATAATCGCAACCAAACTCAACATCAAACAGTTTGTTC 376
Query 313 CTCCTTTCTTACAACCAAATCTCTCCGACCAAGACATTCTAACCGGAGTCTGTTTCGCAT 372
|||| |||||||||||||||||| |||||||||| ||| |||||||||||||||| ||||
Sbjct 377 CTCCCTTCTTACAACCAAATCTCACCGACCAAGAAATTGTAACCGGAGTCTGTTTTGCAT 436
Query 373 CAGCTGGTGCCGGTTACGACGACCTG-ACCAGTCTCTCGACACAAGCCATTCGTGTCTCG 431
|||||||||| |||||||| || | | ||||||||| |||||||||||||||||||||||
Sbjct 437 CAGCTGGTGCGGGTTACGATGA-CAGTACCAGTCTCACGACACAAGCCATTCGTGTCTCG 495
Query 432 GAACAACCAAACATGTTCAAGAGTTACATTGCTCGTCTCAAAG-GTATCGTGGGAGACAA 490
||||||||||| |||||||||||||||||||||||||| ||| ||||||| || |||||
Sbjct 496 GAACAACCAAATATGTTCAAGAGTTACATTGCTCGTCT-TAAGAGTATCGTAGGTGACAA 554
Query 491 GAAAGCGATGGAGATCATAAACAATGCCTTCGTGGTTGTGAGTGCAGGGCCTAACGATTT 550
|||||| ||| |||||||||||||||| || |||||||| |||||||||||||| |||||
Sbjct 555 GAAAGCCATGAAGATCATAAACAATGCTTTGGTGGTTGTTAGTGCAGGGCCTAATGATTT 614
Query 551 CATTTTGAACTATTACGAAATTCCCTCAAGGCGTCTCGAGTATCCT-TTCATTTCTGGTT 609
||| ||||| |||||||| |||||||| |||||| || ||||||| | ||||||| ||
Sbjct 615 CATCTTGAATTATTACGATGTTCCCTCATGGCGTCGCGTGTATCCTAGT-ATTTCTGATT 673
Query 610 ACCAAGACTTT-ATTCTTAAGAGGCTTGAA-AATTTCGTGCGGGAGCTTTACAGTTTAGG 667
||||||| ||| | ||||| |||||| || |||||||||| ||| ||||||||| ||||
Sbjct 674 ACCAAGA-TTTCGTGCTTAATAGGCTT-AACAATTTCGTGCAGGAACTTTACAGTCTAGG 731
Query 668 -TGTCCGGAATGTTTTGGTTGGAGGTTTACCGCCAATGGGGTGTTTACCGATCCATATGA 726
|| |||||| || |||||||||| |||||||||||||| ||||||||||| || ||||
Sbjct 732 TTG-CCGGAAAATTCTGGTTGGAGGGTTACCGCCAATGGGATGTTTACCGATTCAAATGA 790
Query 727 CTGCTAAATTCCGCAACATTTTTAGATTCTGCTTGGAACACCATAACAAAGACTCTGTTT 786
||||| ||||||||||| | | || || ||||||||||| | |||| |||||||||||
Sbjct 791 CTGCTCAATTCCGCAACGTCCTAAGGTTTTGCTTGGAACAAGAGAACAGAGACTCTGTTT 850
Query 787 TATACAATGAGAAACTTCAGAATCTCTTGCCCCAAATCGAAGCATCTCTTCCAGGAAGCA 846
|||||||| ||||||||||||| ||||| || ||||||| ||||||| | |||||||
Sbjct 851 TATACAATCAGAAACTTCAGAAGCTCTTATATCAGATCGAAGTATCTCTTACGGGAAGCA 910
Query 847 A-ATTCCTTTACGCCGATGTCTATAATCCTATGATGGAGATGATCCAAAACCCTAGCAAA 905
| | |||||||| | |||||||| | |||||||||||||||||||||||||||||||||
Sbjct 911 AGA-TCCTTTACTCTAATGTCTATGACCCTATGATGGAGATGATCCAAAACCCTAGCAAA 969
Query 906 TACGGGTTCAAAGAGACGAAGAGAGGATGTTGTGGAACAGGGTTCCTGGAGACGAGCTTC 965
|||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 970 TACGGGTTTAAAGAGACGAGGAGAGGATGTTGTGGAACAGGGTTCTTGGAGACGAGCTTC 1029
Query 966 ATGTGTAATGTTTTTTCTCCTGTGTGTCAAAATCGGTCGGAGTTTTTGTTCTTTGACTCG 1025
|||||||||| || |||||| ||||||| ||||| ||||||||| ||||||||||||||
Sbjct 1030 ATGTGTAATGCTTATTCTCCCATGTGTCAGAATCGCTCGGAGTTTCTGTTCTTTGACTCG 1089
Query 1026 ATTCATCCATCGGAAGCTACCTATAATGT-CATAGGCAATCTTCTGGATCCTCTA-ATTC 1083
||||| ||||| ||||||||||||||| | ||| |||||| |||||||| || | ||||
Sbjct 1090 ATTCACCCATCAGAAGCTACCTATAAT-TACATTGGCAATGTTCTGGATACTA-AGATTC 1147
Query 1084 GTGGAAAG-TTCCAGGCTTAAGTCATCACGAGTTGCAAA-ACTGACACAATTAATTTTCT 1141
|||| | || |||||||||| ||||||| || |||| | ||| |||| ||| | ||
Sbjct 1148 GTGGGTGGCTTA-AGGCTTAAGTTATCACGATTTTCAAAGATTGA-ACAA--AATAT-CT 1202
Query 1142 TGTTTCTTTAATGCGACTAGTTGTGGACTTTCGTTTATGAATCAA--ATGTAACTTTGGC 1199
||||| | |||||||||| ||||||||| | |||| | |||||| || ||||||||||
Sbjct 1203 -GTTTCAT-AATGCGACTATTTGTGGACTAT-GTTTGTTAATCAACTATATAACTTTGGC 1259
> Ahg344029 jgi|Araly1|344029|fgenesh1_pg.C_scaffold_4000371
Length=1080
Score = 1094 bits (592), Expect = 0.0
Identities = 916/1069 (86%), Gaps = 35/1069 (3%)
Strand=Plus/Plus
Query 21 ATGTCGACTTCTAAAG-CCATAACCTTAACTCTCTTCATTGCAACAACATTACTAGCGCC 79
||||||||||| ||| |||||||||| ||||||||||| ||||| || |||| || |
Sbjct 1 ATGTCGACTTC-CAAGACCATAACCTTCACTCTCTTCATAGCAAC-AC--TACTCTCGTC 56
Query 80 CTGCAACGCAGCCGCAAACGCAACAACG-AAGCCGCTCTTCCCAGCGATTCTAATCTTCG 138
|||||| |||||||||||||| |||||| || ||||| |||||||||||||||||||| |
Sbjct 57 CTGCAAAGCAGCCGCAAACGCTACAACGCAA-CCGCTATTCCCAGCGATTCTAATCTTTG 115
Query 139 GTGATTCAACCGTCGATACAGGAAACAACAACTACC-CTTTACCAACAATCTTCAGAGCT 197
| || ||||| ||||| ||||| ||||||||||||| | | || ||||||||||| ||||
Sbjct 116 GCGACTCAACAGTCGACACAGGCAACAACAACTACCAC-TCACAAACAATCTTCAAAGCT 174
Query 198 GAACACT-TTCCTTACGGCATGGATCTTCCAGACGGA-AAAGCTAACGGAAGATTCTCAA 255
|||| | ||||||| || || ||||| ||| || | ||||||| ||||||||| |||
Sbjct 175 AAACA-TCTTCCTTATGGAATTGATCTCCCAAAC-CACAAAGCTAGTGGAAGATTCACAA 232
Query 256 A-CGGAAAACT-TATCTCCGACATAATCGCAACCAAACTCAACATCAAAGAGTTTATTCC 313
| |||||| | | ||||||||||||||||||| ||||||||||||||| ||||| ||||
Sbjct 233 ATGGGAAAA-TCT-TCTCCGACATAATCGCAACAAAACTCAACATCAAACAGTTTGTTCC 290
Query 314 TCCTTTCTTACAACCAAATCTCTCCGACCAAGACATTCTAACCGGAGTCTGTTTCGCATC 373
||| |||||||||||||||||||| |||||||| ||| ||||||| |||||||| |||||
Sbjct 291 TCCCTTCTTACAACCAAATCTCTCTGACCAAGAAATTGTAACCGGGGTCTGTTTTGCATC 350
Query 374 AGCTGGTGCCGGTTACGACGACCTG-ACCAGTCTCTCGACACAAGCCATTC-GTGTCTCG 431
||| ||||| |||||||| |||| | |||||||||||||| |||| || || ||||||||
Sbjct 351 AGCCGGTGCGGGTTACGATGACC-GTACCAGTCTCTCGACTCAAG-CAATCGGTGTCTCG 408
Query 432 GAACAACCAAACATGTTCAAGAGTTACATTGCTCGTCTCAAAGGTATCGTGGGAGACAAG 491
|| |||||||| |||||||||||||| ||||||||||| ||| ||||||| |||||||||
Sbjct 409 GACCAACCAAAGATGTTCAAGAGTTATATTGCTCGTCTTAAAAGTATCGTAGGAGACAAG 468
Query 492 AAAGCGATGGAGATCATAAACAATGCCTTCGTGGTTGTGAGTGCAGGGCCTAACGATTTC 551
||||| |||||||||||||||||||| || |||||| | ||||||||||||||||||||
Sbjct 469 AAAGCTATGGAGATCATAAACAATGCTTTGGTGGTTATAAGTGCAGGGCCTAACGATTTT 528
Query 552 ATTTTGAACTATTACGAAATTCCCTCAAGGCGTCTCGAGTATCCTTTCATTTCTGGTTAC 611
|| ||||| ||||| || |||| ||||||||||| |||| |||| |||||||||||||
Sbjct 529 ATCTTGAATTATTATGATTTTCCTTCAAGGCGTCTTGAGTTTCCTCACATTTCTGGTTAC 588
Query 612 CAAGACTTTATTCTTAAGAGGCTTGAAAATTTCGTGCGGGAGCTTTACAGTTTAGG-TGT 670
||||||||| | ||||| |||||||| ||| ||||||||||||||||||||||||| ||
Sbjct 589 CAAGACTTTGTGCTTAAAAGGCTTGACAATCTCGTGCGGGAGCTTTACAGTTTAGGTTG- 647
Query 671 CCGGAATGTTTTGGTTGGAGGTTTACCGCCAATGGGGTGTTTACCGATCCATATGACTGC 730
|||||| || |||| |||||||||||||| ||||| ||||||||||| || ||||||||
Sbjct 648 CCGGAAAATTATGGTAGGAGGTTTACCGCCGATGGGTTGTTTACCGATTCAGATGACTGC 707
Query 731 TAAATTCCGCAACATTTTTAGATTCTGCTTGGAACACCATAACAAAGACTCTGTTTTATA 790
||||||||||||| | | || |||||||||||||| | ||| ||||||||| || ||
Sbjct 708 TAAATTCCGCAACGCTCTAAGGTTCTGCTTGGAACAAGAGAACCGAGACTCTGTCTTGTA 767
Query 791 CAATGAGAAACTTCAGAATCTCTTGCCCCAAATCGAAGCATCTCTTCCAGGAAGCAA-AT 849
|||| ||||||||||||| || || || || ||||||||||||||| |||||||||| |
Sbjct 768 CAATCAGAAACTTCAGAAGCTATTACCTCAGATCGAAGCATCTCTTACAGGAAGCAAGA- 826
Query 850 TCCTTTAC-GCCGATGTCTATAATCCTATGATGGAGATGATCCAAAACCCTAGCAAATAC 908
|||||||| | |||||||| | || |||||||| ||||| ||||||||||||||||||
Sbjct 827 TCCTTTACTG-TAATGTCTATGACCCGATGATGGACATGATGCAAAACCCTAGCAAATAC 885
Query 909 GGGTTCAAAGAGACGAAGAGAGGATGTTGTGGAACAGGG--TTCCTGGAGACGAGCTTCA 966
||||| |||||||||| |||||||||||||||||||||| || |||||||||||||||
Sbjct 886 GGGTTTAAAGAGACGAGGAGAGGATGTTGTGGAACAGGGCATT--TGGAGACGAGCTTCA 943
Query 967 TGTGTAATGTTTTTTCTCCTGTGTGTCA-AAATCGGTCGGAGTTTTTGTTCTTTGACTCG 1025
||||||||| ||||||||| |||| | |||| || |||||||||||||||||||||
Sbjct 944 TGTGTAATGCTTTTTCTCCAACGTGT-AGGAATCACTCCGAGTTTTTGTTCTTTGACTCG 1002
Query 1026 ATTCATCCATCGGAAGCTACCTATAA-TGTCATAGGCAATCTTCTGGAT 1073
|||||||||||||||||||||||||| | | || |||||| |||| |||
Sbjct 1003 ATTCATCCATCGGAAGCTACCTATAACTAT-ATGGGCAATTTTCTAGAT 1050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44756304558
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5