BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31560.1
Length=1169
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482083 jgi|Araly1|482083|fgenesh2_kg.4__1143__AT2G31560.1 1598 0.0
Ahg497529 jgi|Araly1|497529|fgenesh2_kg.762__2__AT2G31560.1 1548 0.0
Ahg470598 jgi|Araly1|470598|fgenesh2_kg.1__552__AT1G05870.2 346 2e-94
> Ahg482083 jgi|Araly1|482083|fgenesh2_kg.4__1143__AT2G31560.1
Length=1115
Score = 1598 bits (865), Expect = 0.0
Identities = 1032/1109 (93%), Gaps = 25/1109 (2%)
Strand=Plus/Plus
Query 29 AAAAACAATCACAGAGAGAAAAACCAATGGCTTGTATTCACATCGAATCATCACATCCAC 88
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 AAAAACAATCACAGAGAGAAAAA-CAATGGCTTGTATTCACATCGAATCATCACAT---- 55
Query 89 CTGCATGGAAGACACACTCTGTCCAAGAGAACAAACCAGCAAATGCTGATGATATATCGA 148
| |||||||||||||||||||||||| ||| |||||| |||||||||||| || |||||
Sbjct 56 C--CATGGAAGACACACTCTGTCCAAGTGAAGAAACCAACAAATGCTGATGTTACATCGA 113
Query 149 ACACAACCTTACCAG-A-A-CACCACGACGGTGGCGACGGGGGAATCCAAGAAACGTGGG 205
||||| |||||||| | | |||||||||||||| ||||| |||||||||||||||||||
Sbjct 114 ACACAGTCTTACCAGAACACCACCACGACGGTGGTGACGGAGGAATCCAAGAAACGTGGG 173
Query 206 CCGCGATTGGAGATTCTGGCGGCA-GAGGAGGAGGCTATTTCGCCGGAGAGAGTAGG--- 261
||||||||||| | || | | | |||||||||||||||||||||| |||||||||
Sbjct 174 CCGCGATTGGAAACTCCATC-GTAGGAGGAGGAGGCTATTTCGCCGGCGAGAGTAGGAAT 232
Query 262 AAGAAGCTGGAGAAGAA-GAAGAGCCAAGTGTTGCTTGAGGGATACGCGTTGGATGATCA 320
|||||||||||||| || |||||||||||||||||||||||||||||| ||||||||| |
Sbjct 233 AAGAAGCTGGAGAA-AAGGAAGAGCCAAGTGTTGCTTGAGGGATACGCTTTGGATGATAA 291
Query 321 AGATGATTTGACGAGAGCCAAGAGTTTGACGGATGATGATCTTGAGGAGCTTAAAGGTTG 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 AGATGATTTGACGAGAGCCAAGAGTTTGACGGATGATGATCTTGAGGAGCTTAAAGGTTG 351
Query 381 TTTAGATCTAGGGTTTGGTTTTAGTTACGATGAGATCCCTGAGCTTTGCAACACTTTGCC 440
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 352 TTTAGATCTAGGGTTTGGTTTTAGTTACGACGAGATCCCTGAGCTTTGTAATACTTTGCC 411
Query 441 TGCGTTAGAGCTTTGTTACTCCATGAGCCAGAAGTTCTTAGATGATAAGCAACAAAACCA 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 412 TGCGTTAGAGCTTTGTTACTCCATGAGCCAGAAGTTCTTAGATGATAAGCAACAAAATCA 471
Query 501 CCACAAGTCCCAGGAGGAAGATGATTCGTCGCCACCACCGACCACGACCGCTCCAATTGC 560
||||||||||| ||| |||||||||||| | |||||||| ||||||||||||||||||||
Sbjct 472 CCACAAGTCCCCGGATGAAGATGATTCGCCTCCACCACCAACCACGACCGCTCCAATTGC 531
Query 561 AAATTGGAAGATCTCTAGCCCTGGTGATGATCCAGATGATGTAAAAGCTAGACTCAAATA 620
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 532 AAATTGGAAGATCTCTAGTCCTGGTGATGATCCAGATGATGTAAAAGCTAGACTCAAATA 591
Query 621 TTGGGCACAAACTGTTGCTTGCACCGTACGGTTGTGCAGCTGAACTAGAATCGATTTTCA 680
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||
Sbjct 592 TTGGGCACAAACTGTTGCTTGCACCGTACGATTGTGCAGCTGAACAAGAATCGATCTTCT 651
Query 681 TCTTTGAACCAGAGAAA-GACCGTCTTTGCAAGAATGAAGTCTCTGCCATTGTTCGCTGA 739
|| ||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 652 TCATTGAACCAG-GAAAAGACCGTCTTTGCAAGAATGAAGTCTCTGCCATTGTTAGCTGA 710
Query 740 GAATAGACCTGCAAATGTGTCTGTGGATAAACTGTTCTCCTGACTGTTGTGATTGAGTGC 799
||||||||||||||||| |||||||||||||||||||| ||||||||| || ||||||||
Sbjct 711 GAATAGACCTGCAAATGGGTCTGTGGATAAACTGTTCTGCTGACTGTTTTGTTTGAGTGC 770
Query 800 AATGTGGTTGCTT-AACATATGACATCTGAATTAGGGTTCTTGTCCTCTCATATGCAGTG 858
||||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||
Sbjct 771 AATGTGGTTGCTTTAACATCTAACATCTGAATTAGGGTTCTTGTCCTCTCATACGCAGTG 830
Query 859 ATGAGATTTAGACACAGAAATCAATCTCCAACTGttttttt-GAAGACCTCTGTTTTTGG 917
|||||||||||| ||| |||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 831 ATGAGATTTAGAGACACAAATCAATCTCCAACTGTTTTTTTTGAAGATCTCTGCTTTTGG 890
Query 918 CTGAGGCTTATATGATGAGGTTTTGCTTCAATCACAAGATGTCAACAAAGAAAGCACATG 977
|||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct 891 CTGAGGCTTATATGATAAC-TTT-GCTTCAATCACAAGATGTCAACAAAGAAAGCACATG 948
Query 978 ACCCTTCTTTTATGTTCTTTTACATGTGATTCTTATCTTTTTGTCCCGTGGCTAGGAAAG 1037
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 ACCTTTCTTTTATGTTCTTTTACATGTGATTCTTATCTTTTTGTCCCGTGGCTAGGAAAG 1008
Query 1038 AATCAGAAACTTTTTGTGGTCATAAGTTGTGAACACACTTAAACGTGTCGTGTACGATAG 1097
|||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1009 AATCTGAAACGTTTTGTGGTCATAAGTTGTGAACACGCTTAAACGTGTCGTGTACGATAG 1068
Query 1098 GGCAAAAATCCTTTCACATGTTCTTTTTA 1126
||||| | ||||| |||||||||||||||
Sbjct 1069 GGCAACA-TCCTT-CACATGTTCTTTTTA 1095
> Ahg497529 jgi|Araly1|497529|fgenesh2_kg.762__2__AT2G31560.1
Length=1104
Score = 1548 bits (838), Expect = 0.0
Identities = 1015/1097 (93%), Gaps = 26/1097 (2%)
Strand=Plus/Plus
Query 43 AGAGAAAAAC--CAATGGCTTGTATTCACATCGAATCATCACATCCACCTGCATGGAAGA 100
|||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1 AGAGAAAAACAACAATGGCTTGTATTCACATCGAATCATCACAT----C--CATGGAAGA 54
Query 101 CACACTCTGTCCAAGAGAACAAACCAGCAAATGCTGATGATATATCGAACACAACCTTAC 160
||||||||||||||| ||| |||||| |||||||||||| || |||||||||| |||||
Sbjct 55 CACACTCTGTCCAAGTGAAGAAACCAACAAATGCTGATGTTACATCGAACACAGTCTTAC 114
Query 161 CAG-A-A-CACCACGACGGTGGCGACGGGGGAATCCAAGAAACGTGGGCCGCGATTGGAG 217
||| | | |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 115 CAGAACACCACCACGACGGTGGTGACGGAGGAATCCAAGAAACGTGGGCCGCGATTGGAA 174
Query 218 ATTCTGGCGGCA-GAGGAGGAGGCTATTTCGCCGGAGAGAGTAGG---AAGAAGCTGGAG 273
| || | | | |||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 175 ACTCCATC-GTAGGAGGAGGAGGCTATTTCGCCGGCGAGAGTAGGAATAAGAAGCTGGAG 233
Query 274 AAGAA-GAAGAGCCAAGTGTTGCTTGAGGGATACGCGTTGGATGATCAAGATGATTTGAC 332
|| || |||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 234 AA-AAGGAAGAGCCAAGTGTTGCTTGAGGGATACGCTTTGGATGATAAAGATGATTTGAC 292
Query 333 GAGAGCCAAGAGTTTGACGGATGATGATCTTGAGGAGCTTAAAGGTTGTTTAGATCTAGG 392
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 293 GAGAGCCAAGAGTTTGACGGAAGATGATCTTGAGGAGCTTAAAGGTTGTTTAGATCTAGG 352
Query 393 GTTTGGTTTTAGTTACGATGAGATCCCTGAGCTTTGCAACACTTTGCCTGCGTTAGAGCT 452
|||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 353 GTTTGGTTTTAGTTACGACGAGATCCCTGAGCTTTGTAATACTTTGCCTGCGTTAGAGCT 412
Query 453 TTGTTACTCCATGAGCCAGAAGTTCTTAGATGATAAGCAACAAAACCACCACAAGTCCCA 512
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 413 TTGTTACTCCATGAGCCAGAAGTTCTTAGATGATAAGCAACAAAATCACCACAAGTCCCC 472
Query 513 GGAGGAAGATGATTCGTCGCCACCACCGACCACGACCGCTCCAATTGCAAATTGGAAGAT 572
||| |||||||||||| | |||||||||| ||| |||| |||||||||||||||||||||
Sbjct 473 GGATGAAGATGATTCGCCTCCACCACCGAACACCACCGTTCCAATTGCAAATTGGAAGAT 532
Query 573 CTCTAGCCCTGGTGATGATCCAGATGATGTAAAAGCTAGACTCAAATATTGGGCACAAAC 632
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 ATCTAGTCCTGGTGATGATCCAGATGATGTAAAAGCTAGACTCAAATATTGGGCACAAAC 592
Query 633 TGTTGCTTGCACCGTACGGTTGTGCAGCTGAACTAGAATCGATTTTCATCTTTGAACCAG 692
|||||||||||||||||| |||||||||||||| ||||||||| ||| || |||||||||
Sbjct 593 TGTTGCTTGCACCGTACGATTGTGCAGCTGAACAAGAATCGATCTTCTTCATTGAACCAG 652
Query 693 AGAAA-GACCGTCTTTGCAAGAATGAAGTCTCTGCCATTGTTCGCTGAGAATAGACCTGC 751
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 653 -GAAAAGACCGTCTTTGCAAGAATGAAGTCTCTGCCATTGTTAGCTGAGAATAGACCTGC 711
Query 752 AAATGTGTCTGTGGATAAACTGTTCTCCTGACTGTTGTGATTGAGTGCAATGTGGTTGCT 811
||||| |||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct 712 AAATGGGTCTGTGGATAAACTGTTCTTCTGACTGTTTTGTTTGAGTGCAATGTGGTTGCT 771
Query 812 T-AACATATGACATCTGAATTAGGGTTCTTGTCCTCTCATATGCAGTGATGAGATTTAGA 870
| ||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 772 TTAACATCTAACATCTGAATTAGGGTTCTTGTCCTCTCATACGCAGTGATGAGATTTAGA 831
Query 871 CACAGAAATCAATCTCCAACTGttttttt-GAAGACCTCTGTTTTTGGCTGAGGCTTATA 929
||| |||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 832 GACACAAATCAATCTCCAACTGTTTTTTTTGAAGATCTCTGCTTTTGGCTGAGGCTTATA 891
Query 930 TGATGAGGTTTTGCTTCAATCACAAGATGTCAACAAAGAAAGCACATGACCCTTCTTTTA 989
|||| | ||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 892 TGATAAC-TTT-GCTTCAATCACAAGATGTCAACAAAGAAAGCACATGACCTTTCTTTTA 949
Query 990 TGTTCTTTTACATGTGATTCTTATCTTTTTGTCCCGTGGCTAGGAAAGAATCAGAAACTT 1049
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 950 TGTTCTTTTACATGTGATTCTTATCTTTTTGTCCCGTGGCTAGGAAAGAATCTGAAACGT 1009
Query 1050 TTTGTGGTCATAAGTTGTGAACACACTTAAACGTGTCGTGTACGATAGGGCAAAAATCCT 1109
|||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||
Sbjct 1010 TTTGTGGTCATAAGTTGTGAACACGCTTAAACGTGTCGTGTACGATAGGGCAACA-TCCT 1068
Query 1110 TTCACATGTTCTTTTTA 1126
| |||||||||||||||
Sbjct 1069 T-CACATGTTCTTTTTA 1084
> Ahg470598 jgi|Araly1|470598|fgenesh2_kg.1__552__AT1G05870.2
Length=1153
Score = 346 bits (187), Expect = 2e-94
Identities = 372/457 (81%), Gaps = 30/457 (7%)
Strand=Plus/Plus
Query 256 AGTAGGAAGAAGCTGGAGAAGAAGAAGAGCCAAGTGTTGCTTG-A-G----G--GATAC- 306
||| ||||||||||||||| |||||||||||||||||| || | | | | || ||
Sbjct 142 AGTCGGAAGAAGCTGGAGAGGAAGAAGAGCCAAGTGTTACTGGAAGGTTACGTTGAGACT 201
Query 307 GC-G-T-TGGATGATC---AAGATGATTTGACGAGAGCCAAGAGTTTGACGGATGATGAT 360
|| | | ||||||||| |||| ||| |||||||| ||||||||||||||||||| |||
Sbjct 202 GCTGCTGTGGATGATCAAAAAGACGATCTGACGAGATCCAAGAGTTTGACGGATGACGAT 261
Query 361 CTTGAGGAGCTTAAAGGTTGTTTAGATCTAGGGTTTGGTTTTAGTTACGATGAGATCCCT 420
|| || || || ||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 262 CTCGAAGATCTCAAAGGTTGTTTAGATCTAGGGTTTGGTTTCAGCTACGACGAGATCCCT 321
Query 421 GAGCTTTGCAACACTTTGCCTGCGTTAGAGCTTTGTTACTCCATGAGCCAGAAGTTCTTA 480
||||| ||||||||||| ||||| || |||||||| || || ||||||||||||||||||
Sbjct 322 GAGCTCTGCAACACTTTACCTGCTTTGGAGCTTTGCTATTCAATGAGCCAGAAGTTCTTA 381
Query 481 GATGATAAGCAACAAAACCACCACAA-GTCC--CAGGAGGAAGATGATTCGTCGCCACCA 537
|| |||||||| ||| | ||| || || | | || ||||||| | ||||||| |||
Sbjct 382 GACGATAAGCAT-AAATC-ACCGGAAAGTTCGTC-GGTGGAAGATTCTCCGTCGCCTCCA 438
Query 538 CC-GACCACGACCGCTCCAATTGCAAATTGGAAGATCTCTAG-CCCTGGTGATGATCCAG 595
|| | | || || |||| ||||| ||||||||||||||||| ||| |||||| |||| |
Sbjct 439 CCTGTC-ACCTCCACTCCCATTGCCAATTGGAAGATCTCTAGTCCC-GGTGATAATCCGG 496
Query 596 ATGATGTAAAAGCTAGACTCAAATATTGGGCACAAACTGTTGCTTGCACCGTACGGTTGT 655
||||||| |||||||| |||||||| ||||||||| | ||||| || || || | ||||
Sbjct 497 ATGATGTGAAAGCTAGGCTCAAATACTGGGCACAAGCCGTTGCCTGTACTGTCCAATTGT 556
Query 656 GCAGCTGAACTAGAATCGATTTTCATCTT-TGAACCA 691
||||||||| | ||||| ||| ||| ||| | |||||
Sbjct 557 GCAGCTGAA-T-GAATC-ATTGTCA-CTTCTCAACCA 589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43612617048
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5