BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31570.1
Length=853
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952462 jgi|Araly1|952462|scaffold_76200001.1 867 0.0
Ahg933705 jgi|Araly1|933705|scaffold_401693.1 867 0.0
> Ahg952462 jgi|Araly1|952462|scaffold_76200001.1
Length=554
Score = 867 bits (469), Expect = 0.0
Identities = 523/549 (95%), Gaps = 4/549 (1%)
Strand=Plus/Plus
Query 83 AGAAAGAGACCA-ACGACACTGCAAATGGCGGATGAATCTCCAAAGTCTATCTACGACTT 141
||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAGAGAGACCATA-GACACTGCAAATGGCGGATGAATCTCCAAAGTCTATCTACGACTT 59
Query 142 CACCGTCAAGGATATCGGAGGTAACGATGTGAGTTTGGACCAATACAAAGGCAAAACTCT 201
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 60 CACCGTCAAGGATATCGGAGGTAACGATGTGAGTTTGAACCAATACAAAGGCAAAACTCT 119
Query 202 TTTGGTTGTAAACGTTGCTTCCAAATGTGGTCTGACGGATGCGAACTACAAGGAACTGAA 261
| || |||| || ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 120 TCTGATTGTCAATGTTGCTTCCAAATGTGGTCTGACTGATGCCAACTACAAGGAACTGAA 179
Query 262 TGTTCTGTACGAGAAATACAAGGAGCAAGGGTTGGAGATATTAGCATTCCCGTGTAATCA 321
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 180 TGTTCTGTACGAGAAATACAAGGAGCAAGGGTTGGAGATATTAGCATTCCCTTGTAACCA 239
Query 322 GTTCTTAGGACAAGAACCAGGAAACAATGAAGAGATTCAACAAACTGTCTGCACCAGGTT 381
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTTCTTAGGACAAGAACCAGGTAACAATGAAGAGATTCAACAAACTGTCTGCACCAGGTT 299
Query 382 CAAAGCTGAATTCCCCATCTTTGACAAGGTGGATGTGAACGGTAAGAACACGGCACCATT 441
|||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 300 CAAAGCTGAATTCCCCATCTTTGACAAGGTGGATGTGAACGGGAAAAACACGGCGCCATT 359
Query 442 ATACAAGTACTTGAAAGCAGAGAAAGGAGGTTTGCTCATTGATGCTATCAAATGGAACTT 501
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 360 ATACAAATACTTGAAAGCAGAGAAAGGAGGTTTGCTCATTGATGCCATCAAATGGAATTT 419
Query 502 CACCAAATTCTTGGTTTCTCCTGATGGCAAGGTCTTACAGAGATATTCTCCCAGAACCTC 561
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 CACCAAATTCTTGGTTTCTCCTGATGGCAAAGTCTTACAGAGATATTCTCCCAGAACCTC 479
Query 562 TCCTCTTCAATTCGAGAAGGACATTCAAACTGC-GTTGGGACAGGCCTCTTCTTAATCAC 620
||||||||||||||||||||||||||||| | | |||||||||||| ||||||| ||||
Sbjct 480 TCCTCTTCAATTCGAGAAGGACATTCAAAAT-CTGTTGGGACAGGCTTCTTCTTGATCAT 538
Query 621 CAGAAGAAG 629
|||||||||
Sbjct 539 CAGAAGAAG 547
> Ahg933705 jgi|Araly1|933705|scaffold_401693.1
Length=554
Score = 867 bits (469), Expect = 0.0
Identities = 523/549 (95%), Gaps = 4/549 (1%)
Strand=Plus/Plus
Query 83 AGAAAGAGACCA-ACGACACTGCAAATGGCGGATGAATCTCCAAAGTCTATCTACGACTT 141
||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAGAGAGACCATA-GACACTGCAAATGGCGGATGAATCTCCAAAGTCTATCTACGACTT 59
Query 142 CACCGTCAAGGATATCGGAGGTAACGATGTGAGTTTGGACCAATACAAAGGCAAAACTCT 201
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 60 CACCGTCAAGGATATCGGAGGTAACGATGTGAGTTTGAACCAATACAAAGGCAAAACTCT 119
Query 202 TTTGGTTGTAAACGTTGCTTCCAAATGTGGTCTGACGGATGCGAACTACAAGGAACTGAA 261
| || |||| || ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 120 TCTGATTGTCAATGTTGCTTCCAAATGTGGTCTGACTGATGCCAACTACAAGGAACTGAA 179
Query 262 TGTTCTGTACGAGAAATACAAGGAGCAAGGGTTGGAGATATTAGCATTCCCGTGTAATCA 321
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 180 TGTTCTGTACGAGAAATACAAGGAGCAAGGGTTGGAGATATTAGCATTCCCTTGTAACCA 239
Query 322 GTTCTTAGGACAAGAACCAGGAAACAATGAAGAGATTCAACAAACTGTCTGCACCAGGTT 381
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTTCTTAGGACAAGAACCAGGTAACAATGAAGAGATTCAACAAACTGTCTGCACCAGGTT 299
Query 382 CAAAGCTGAATTCCCCATCTTTGACAAGGTGGATGTGAACGGTAAGAACACGGCACCATT 441
|||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 300 CAAAGCTGAATTCCCCATCTTTGACAAGGTGGATGTGAACGGGAAAAACACGGCGCCATT 359
Query 442 ATACAAGTACTTGAAAGCAGAGAAAGGAGGTTTGCTCATTGATGCTATCAAATGGAACTT 501
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 360 ATACAAATACTTGAAAGCAGAGAAAGGAGGTTTGCTCATTGATGCCATCAAATGGAATTT 419
Query 502 CACCAAATTCTTGGTTTCTCCTGATGGCAAGGTCTTACAGAGATATTCTCCCAGAACCTC 561
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 CACCAAATTCTTGGTTTCTCCTGATGGCAAAGTCTTACAGAGATATTCTCCCAGAACCTC 479
Query 562 TCCTCTTCAATTCGAGAAGGACATTCAAACTGC-GTTGGGACAGGCCTCTTCTTAATCAC 620
|||||||||||||||||||||| |||||||| | |||||||||||| ||||||| ||||
Sbjct 480 TCCTCTTCAATTCGAGAAGGACGTTCAAACT-CTGTTGGGACAGGCTTCTTCTTGATCAT 538
Query 621 CAGAAGAAG 629
|||||||||
Sbjct 539 CAGAAGAAG 547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31565775276
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5