BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31580.1
Length=1946
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344921 jgi|Araly1|344921|fgenesh1_pg.C_scaffold_4001263 2555 0.0
Ahg951726 jgi|Araly1|951726|scaffold_12500005.1 1692 0.0
Ahg942013 jgi|Araly1|942013|scaffold_602557.1 76.8 5e-13
Ahg945403 jgi|Araly1|945403|scaffold_701632.1 71.3 3e-11
> Ahg344921 jgi|Araly1|344921|fgenesh1_pg.C_scaffold_4001263
Length=1563
Score = 2555 bits (1383), Expect = 0.0
Identities = 1506/1566 (96%), Gaps = 6/1566 (0%)
Strand=Plus/Plus
Query 156 ATGGCGAATAGCAAATACGAGTATGTGAAATCATTCGAATTGGAGGATGAAGTCATGCTT 215
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGAATAGCAAATACGAGTATGTGAAGTCATTCGAATTGGAGGATGAAGTCATGCTT 60
Query 216 CCTAACTTGATGGTTGTTCGAATCGATGGTCGTGATTTTTCTAGATTTTCTCAAGTTCAT 275
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 61 CCTAACTTGATGGTTGTTCGAATCGATGGTCGTCATTTTTCTAGATTTTCCCAAGTTCAT 120
Query 276 GAGTTTGAGAAGCCTAATGATGAAACAGCCCTCAATTTGATGAATTCATGTTCAGCTGCG 335
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGTTTGAGAGGCCTAATGATGAAACAGCCCTCAATTTGATGAATTCATGTTCAGCTGCG 180
Query 336 GTTTTGGAAGAGTTTCCTGACATAATCTTTGCTTATGGATACAGTGACGAATACAGCTTT 395
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 181 GTTTTGGAAGAGTTTCCTGACATCATCTTTGCTTATGGATATAGTGACGAATACAGCTTT 240
Query 396 GTATTCAAGAAAACATCAAGATTCTACCAGAGACGAGCCAGTAAGATTTTGTCGTTGGTA 455
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 241 GTATTCAAGAAAACATCAAGATTCTACCAGAGACGAGCCAGTAAGATTCTGTCGTTGGTA 300
Query 456 GCTTCTTTCTTTGCTGCAG-TTTATGTAACAAAATGGAAAGAGTTTTTTCCCC-AAAGAA 513
||||| ||| ||||||| | |||||||||||||||||||||| || ||||||| |||| |
Sbjct 301 GCTTCGTTCGTTGCTGC-GATTTATGTAACAAAATGGAAAGACTTCTTTCCCCAAAAG-A 358
Query 514 AATTATTATATGCTCCGTCCTTCAGTTCAAAAGTTGTAAGTTGTGCATCAGCAGAGGTTC 573
||||| ||||||||| || ||| ||||||||||||||||||||||||| ||||||||||
Sbjct 359 AATTAGAATATGCTCCTTCATTCCGTTCAAAAGTTGTAAGTTGTGCATCCGCAGAGGTTC 418
Query 574 TTCAGGCTTATCTCGCGTGGAGACAACAGGACTGCCACGCCAACAATCAGTATGACACTT 633
|||| |||||| |||| |||||||| || |||||||||||||| ||||||||||||||||
Sbjct 419 TTCAAGCTTATGTCGCATGGAGACAGCATGACTGCCACGCCAATAATCAGTATGACACTT 478
Query 634 GTTTCTGGATGTTAGTTAAAAGTGGAAAGAGCGTAAGTGAAACCCAAGAGATTCTAAAGG 693
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 479 GTTTCTGGATGTTAGTTAAAAGTGGAAAGAGCATAAGTGAAACACAAGAGATTCTAAAGG 538
Query 694 ATACACAAAAACAGCAGAAAAATGAGCTTCTCTTTCAGAAATTTGGTATCAATTACAAGA 753
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 539 ATACACAAAAACAGCAGAAAAACGAGCTTCTCTTTCAGAAATTTGGTATCAATTACAAAA 598
Query 754 CGCTTCCTGAATTGTTTCGCCAAGGATCTTGTCTTTTCAAGAAAAAGGTGGAAGAAACTG 813
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 599 CGCTTCCTGAATTGTTTCGCCAAGGATCGTGTCTTTTCAAGAAAAAGGTAGAAGAAACTG 658
Query 814 TAAAGCATGACGAAAATGGCAATCCTGTAAAAAGATTGAGGAGAAAGGCTGTTTTTGTAC 873
|||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TAAAGCATGATGAGAATGGAAATCCTGTAAAAAGATTGAGGAGAAAGGCTGTTTTTGTAC 718
Query 874 ATTCAGAGAATATTGCAGGAAGAAGCTTTTGGAATGAGCAGCCCTCTCTATATAATGATC 933
|||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 719 ATTCGGAGAATATTGCCGGAAGAAGCTTTTGGAATGAGCAGCCCTCTCTATGTAATGATC 778
Query 934 TTGGCCACTTCACGAAAGACATTGGAAAAATTGAACCAGATTTTATTAGGTCGTTTCAGT 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TTGGCCACTTCACGAAAGACATTGGAAAAATTGAACCAGATTTTATTAGGTCGTTTCAGT 838
Query 994 TTGAGAACAAATTGTTACCTTTAACTTGGGTCGTGGTTAGGATTGATGGCTGTCACTTTC 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 839 TTGAGAACAAATTGTTACCTTTAACTTGGGTCGTGGTTAGGATTGATGGCTGTCATTTTC 898
Query 1054 ACAGATTTTCTGACGTTCATGAATTTGAGAAGCCAAATGATGAGCAAGCTCTGAAACTTA 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ACAGATTTTCTGACGTTCATGAATTTGAGAAGCCAAATGATGAGCAAGCTCTGAAACTTA 958
Query 1114 TGAATTCATGTGCAGTGGCTGTTCTCGAGGAGTTTGAGGATATTCACTTTGCCTATGGTG 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TGAATTCATGTGCAGTGGCTGTTCTCGAGGAGTTTGAGGATATTCACTTTGCCTATGGTG 1018
Query 1174 TCAGTGATGAGTATAGCTTTGTTTTGAAGAAAGAATCTGAGCTCTACAAAAGACAATCCA 1233
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TCAGTGATGAGTACAGCTTTGTTTTGAAGAAAGAATCTGAGCTCTACAAAAGACAATCCA 1078
Query 1234 GTAAGATAATATCTGCAGTCGCATCCTTCTTTACATCCACATATGTGTTACAATGGGGAG 1293
|||| |||||||| ||| || |||||||||||||||| || |||||||||||||||||||
Sbjct 1079 GTAAAATAATATCCGCAATCACATCCTTCTTTACATCGACGTATGTGTTACAATGGGGAG 1138
Query 1294 AATTTTTCCCTCACAAAGAATTGAAGTACCCTCCATCATTCGATGGACGAGCTGTATGCT 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AATTTTTCCCTCACAAAGAATTGAAGTACCCTCCATCATTCGATGGACGAGCTGTATGCT 1198
Query 1354 ATCCAACATACAATATTCTCTTGGATTATCTGGCGTGGAGACAAGTTGACTGCCACATCA 1413
|||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1199 ATCCAACACACAATATTCTTTTGGATTATCTGGCCTGGAGACAAGTTGACTGCCACATCA 1258
Query 1414 ATAATCAGTACAATACATGTTTCTGGATGCTTGTTAAGTCTGGAAAAAACAAAACTCAAT 1473
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1259 ATAATCAGTACAATACATGTTTCTGGATGCTTGTTAAGTCTGGAAAAACCAAAACTCAAT 1318
Query 1474 CCCAAGATTACTTAAAGGGTACACAAACACGAGAGAAAAATGAGCTGCTTAGCCGTCAAT 1533
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1319 CCCAAGATTACTTAAAGGGTACCCAAACACGAGAAAAAAATGAGCTGCTTAGCCGTCAAT 1378
Query 1534 TTGGAATTGAGTACAACTCATTACCTGTAATCTTTCGAATGGGTTCTTCGGTTTTCCGTC 1593
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1379 TTGGAATTGAGTACAACTCATTACCTGTAATCTTTCGAATGGGTTCTTCTGTTTTCCGCC 1438
Query 1594 TAAAGGAAGCTGAGAATGGAGTAGTTTCAGGGAAGAAACTGGAAGGAGAAGTGGTCGTGG 1653
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 GAAAGGAAGCTGAGAATGGAGTAGTTTCAGGGAAGAAACTGGAAGGAGAAGTGGTCGTGG 1498
Query 1654 ATCATTGCAACATCATCGAACGCT-GTTTCTGGGAAGAACACCTACACATTCTTAGCTAC 1712
||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||
Sbjct 1499 ATCATTGCAACATCATCGAACA-TAGTTTCTGGGAAGAACACCCACACATTCTTAGCTAC 1557
Query 1713 TCATAA 1718
||||||
Sbjct 1558 TCATAA 1563
> Ahg951726 jgi|Araly1|951726|scaffold_12500005.1
Length=1619
Score = 1692 bits (916), Expect = 0.0
Identities = 1378/1598 (86%), Gaps = 44/1598 (3%)
Strand=Plus/Plus
Query 154 ATATGGCGAATAGCAAATACGAGTATGTGAAATCATTCGAATTGGAGGATGAAGTCATGC 213
||||||||||||| || |||||||| ||||| ||||||||| |||| || ||||| |||
Sbjct 19 ATATGGCGAATAGTAAGTACGAGTACGTGAAGTCATTCGAAGTGGAAGACGAAGTTATGT 78
Query 214 TTCCTAACTTGATGGTTGTTCGAATCGATGGTCGTGATTTTTCTAGATTTTCTCAAGTTC 273
|||| || ||||| || | || |||||||| ||||||||||| |||||||| |||||||
Sbjct 79 TTCCCAATTTGATAATTATCCGTATCGATGGCCGTGATTTTTCGAGATTTTCCCAAGTTC 138
Query 274 ATGAGTTTGAGAAGCCTAATGATGAAACAGCCCTCAATTTGATGAATTCATGTTCAGCTG 333
| |||||||||||||||||||||| || || || |||||||||||||||||| || ||
Sbjct 139 ACAAGTTTGAGAAGCCTAATGATGAGACGGCTCTAAATTTGATGAATTCATGTGCATCTT 198
Query 334 CGGTTTTGGAAGAGTTTCCTGACATAATCTTTGCTTATGGATACAGTGACGAATACAGCT 393
||||||||||||||| |||||| ||| ||||||| |||||||| |||||||| |||||||
Sbjct 199 CGGTTTTGGAAGAGTATCCTGATATAGTCTTTGCATATGGATATAGTGACGAGTACAGCT 258
Query 394 TTGTATTCAAGAAAACATCAAGATTCTACCAGAGACGAGCCAGTAAGATTTTGTCGTTGG 453
||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||
Sbjct 259 TTGTATTCAAGAAAACATCAAGATTCTACCAGAGACGAGCCAGTAAGGTTTTATCTTTGG 318
Query 454 TAGCTTC-TTTCTTTGCTGCAGTTTATGTAACAAAATGGAAAGAGTTTTTTCCCCAAAGA 512
|||| || ||| |||||||| || |||||||| |||||||||||||| ||||| || |||
Sbjct 319 TAGCCTCATTT-TTTGCTGCGGTCTATGTAACGAAATGGAAAGAGTTCTTTCCTCATAGA 377
Query 513 AAATTATTATATGCTCCGTCCTTCAG-TTCAAAAGTTGTAAGTTGTGCATCAGCAGAGGT 571
|||||| |||||||||| || ||| | |||||||| ||||||||| |||||| ||||||
Sbjct 378 AAATTAGTATATGCTCCTTCATTC-GCTTCAAAAGCTGTAAGTTGCGCATCAATAGAGGT 436
Query 572 TCTTCAGGCTTATCTCGCGTGGAGACAACAGGACTGCCACGCCAACAATCAGTATGACAC 631
|||||| ||||| || || ||||||||||| ||||||||| | ||||||||||||||
Sbjct 437 TCTTCAAGCTTACCTTGCTTGGAGACAACATGACTGCCACATCGGTAATCAGTATGACAC 496
Query 632 TTGTTTCTGGATGTTAGTTAAAAGTGGAAAGAGCGTAAGTGAAACCCAAGAGATTCTAAA 691
||||| ||||||||||| ||||||||||||| | |||||||||| || |||||| | ||
Sbjct 497 ATGTTTTTGGATGTTAGTAAAAAGTGGAAAGACCTTAAGTGAAACACAGGAGATTTTGAA 556
Query 692 GGATACACAAAAACAGCAGAAAAATGAGCTTCTCTTT-CAGAAATTTGGTATCAATTACA 750
||||||||| ||||| |||| |||||||||||| ||| ||| |||||||||| ||||| |
Sbjct 557 GGATACACAGAAACAACAGAGAAATGAGCTTCT-TTTCCAGCAATTTGGTATTAATTATA 615
Query 751 AGACGCTTCCTGAATTGTTTCGCCAAGGATCTTGTCTTTTCAAGAAAAAGGTGGAAGAAA 810
| | |||||||| |||||||||||||||||| || ||||| |||| ||||||||||||||
Sbjct 616 AAATGCTTCCTGTATTGTTTCGCCAAGGATCATGCCTTTTTAAGACAAAGGTGGAAGAAA 675
Query 811 CTGTAAAGCATGACGAAAATGGCAATCCTGTAAAAAGATTGAGGAGAAAGGCTGTTTTTG 870
||||||||||||| || ||||| |||||||||||| |||||||||||| || ||| |
Sbjct 676 CTGTAAAGCATGATGAGAATGGAAATCCTGTAAAACGATTGAGGAGAAGGGAAACTTTAG 735
Query 871 TACATTCAGAGAATATTGCAGGAAGAAGCTTTTGGAATGAGCAGC-CCTCTCTAT-ATAA 928
| |||||||| |||||||| ||||||||||||||||||||||| | ||||||| | ||||
Sbjct 736 TGCATTCAGAAAATATTGCTGGAAGAAGCTTTTGGAATGAGCA-CTCCTCTCT-TCATAA 793
Query 929 TGATCTTGGCCACTTCACGAAAGACATTGGAAAAATTGAACCAGATTTTATTAGGTCGTT 988
|||||||| || || | ||||||||||| |||||||||||||||| | ||| ||||||
Sbjct 794 AGATCTTGGACATTTTGCAAAAGACATTGGCAAAATTGAACCAGATTATGTTAAGTCGTT 853
Query 989 TCAGTTTGAGAACAAATTGTTACCTTTAACTTGGGTCGTGGTTAGGATTGATGGCTGTCA 1048
||||||||||| | ||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct 854 TCAGTTTGAGAGTAGATTATTACCTTTAACTTGGGTTGTGGTTAGGATTGATGGCTGCCA 913
Query 1049 CTTTCACAGATTTTCTGACGTTCATGAATTTGAGAAGCCAAATGATGAGCAAGCTCTGAA 1108
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 914 TTTTCACAGATTTTCTGAAGTTCACGAATTTGAGAAGCCAAATGATGAGCAAGCTCTGAA 973
Query 1109 ACTTATGAATTCATGTGCAGTGGCTGTTCTCGAGGAGTTTGAGGATATTCACTTTGCCTA 1168
|||||||||||||||||||||||||||||| || |||||| |||||||| |||||||||
Sbjct 974 ACTTATGAATTCATGTGCAGTGGCTGTTCTTGAAGAGTTTCAGGATATTGTCTTTGCCTA 1033
Query 1169 TGGTGTCAGTGATGAGTATAGCTTTGTT-TTGAAGAA-AGAATCTGAGCTCTACAAAAGA 1226
|| || ||||| ||||| ||||||||| || ||||| | |||||||||| |||||||||
Sbjct 1034 CGGCGTTAGTGACGAGTACAGCTTTGTTCTT-AAGAATA-AATCTGAGCTTTACAAAAGA 1091
Query 1227 CAATCCAGTAAGATAATATCTGCAGTCGCATCCTTCTTTACATCCACATATGTGTT-ACA 1285
|| ||||||||||||||||||||| | | ||||||||| ||||| || || ||| | | |
Sbjct 1092 CAGTCCAGTAAGATAATATCTGCAATTGTATCCTTCTTCACATCGACGTACGTGATGAGA 1151
Query 1286 ATGGGGAGAATTT-TTCCCTCACAAAGAATTGAAGTACCCTCCATCATTCGATGGACGAG 1344
|||||||| ||| |||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1152 -TGGGGAGA-TTTCTTCCCTCACAAAAAATTGAAATACCCTCCATCATTCGATGGACGAG 1209
Query 1345 CTGTATGCTATCCAACATACA-ATATTCTCTTGGATTATCTGGCGTGGAGACAAGTTGAC 1403
|||| ||||||||||||| || |||||||| |||||||||| || ||||||||||| |||
Sbjct 1210 CTGTTTGCTATCCAACAT-CAGATATTCTCCTGGATTATCTAGCTTGGAGACAAGTCGAC 1268
Query 1404 TGCCACATCAATAATCAGTACAATACATGTTTCTGGATGCTTGTTAAGTCTGGAAAAAAC 1463
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1269 TGCCACATCAATAATCAGTATAATACATGTTTCTGGATGCTTGTTAAGTCTGGAAAAAGC 1328
Query 1464 AAAACTCAATCCCAAGATTACTTAAAGGGTACACAAACACGAGAGAAAAATGAGCTGCTT 1523
||||||||| |||||||||||||||||||||| ||||||||||| ||||| ||| | |||
Sbjct 1329 AAAACTCAAGCCCAAGATTACTTAAAGGGTACCCAAACACGAGAAAAAAACGAGTTACTT 1388
Query 1524 AGCC-GTCAATTTGGAATTGAGTACAACTCATTACCTGTAATCTTTCGAATGGGTTCTTC 1582
| || | |||||||||||||||||||| ||||||||||||||||| || |||| |||||
Sbjct 1389 ATCCAG-CAATTTGGAATTGAGTACAATTCATTACCTGTAATCTTCCGCCTGGGGTCTTC 1447
Query 1583 GGTTTTCCGTCTAAAG--G-A--A-GCTG----AGA--A---TGGAGTAGTTTCAGGGAA 1627
|||||||| |||||| | | | | || ||| | ||||| ||||||||| ||
Sbjct 1448 CGTTTTCCGCCTAAAGACGCAGGAAGGTGTTGCAGAGGAGAATGGAGAAGTTTCAGGAAA 1507
Query 1628 GAAACTGGAAGGAGAAGTGGTCGTGGA-TCATTGC-AACATCATCGAACGCTGTTTCTGG 1685
| || |||||| ||||||||| || || | | | | ||||| ||||| | |||||||||
Sbjct 1508 GCAAGTGGAAGCAGAAGTGGTTGTAGACT-ACT-CTAACATTATCGACCAATGTTTCTGG 1565
Query 1686 GAAGAACA-CCTACACATTCTTAGCTACTCATAA-ACA 1721
|| |||| ||| ||||||||||||| ||| ||| |||
Sbjct 1566 CAACAACATCCT-CACATTCTTAGCTGCTCCTAACACA 1602
> Ahg942013 jgi|Araly1|942013|scaffold_602557.1
Length=421
Score = 76.8 bits (41), Expect = 5e-13
Identities = 43/44 (98%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 28 TCGGCGTTGTTAGAAAGGAAGCTGAGAATTGCAACTGCTTACAA 71
||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 132 TCGGCGTTGTTTGAAAGGAAGCTGAGAATTGCAACTGCTTACAA 175
> Ahg945403 jgi|Araly1|945403|scaffold_701632.1
Length=403
Score = 71.3 bits (38), Expect = 3e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 32 CGTTGTTAGAAAGGAAGCTGAGAATTGCAACTGCTTACAAG 72
|||||||||||||||||||||||||||| ||||||||||||
Sbjct 215 CGTTGTTAGAAAGGAAGCTGAGAATTGCGACTGCTTACAAG 255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73133270400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5