BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31600.1
Length=1269
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482086 jgi|Araly1|482086|fgenesh2_kg.4__1146__AT2G31600.1 1552 0.0
Ahg898320 jgi|Araly1|898320|Al_scaffold_0005_2286 861 0.0
> Ahg482086 jgi|Araly1|482086|fgenesh2_kg.4__1146__AT2G31600.1
Length=1220
Score = 1552 bits (840), Expect = 0.0
Identities = 1068/1175 (91%), Gaps = 27/1175 (2%)
Strand=Plus/Plus
Query 1 CCGACGACGGCAATGGCGTCAGCTTCCAAGAACATTCAGCAAAACCCTTTCTCCTCGAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCGACGACGGCAATGGCGTCAGCTTCCAAGAACATTCAGCAAAACCCTTTCTCCTCGAAA 60
Query 61 CCACCACGGCCTCCGTATTCCTCCGGCGCTGCATCAACAACCGCAGTGGCTTCCACCTCA 120
|| ||| ||||||||| |||||||||||||||||| || |||| |||||||||||||||
Sbjct 61 CCGCCAAGGCCTCCGTCTTCCTCCGGCGCTGCATCTACTTCCGCCGTGGCTTCCACCTCA 120
Query 121 GCCGAGCCCCTAATTCGAAACTCTACCTTAAATCCTAACCCTAGCACCAGCGGCTTACCG 180
|||||||||| ||| || ||| |||||| ||| |||| ||||||||| | || ||||||
Sbjct 121 GCCGAGCCCCAAATACGGAACCCTACCTCAAACCCTAGCCCTAGCACAAACGTTTTACCG 180
Query 181 TCGACATCGAATTCACCGATTACGATGTCACAAGAAGATGAAATCCTCGCACGCTCCAGT 240
||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 TCGACTTCGAATTTACCGATTACGATGTCACAAGAAGATGAAATCCTCGCACTTTCCAGT 240
Query 241 CACATAACCCGGTCGGAGCTTCTCAAACGCCGATCACACAACCTGAAGCAGCTGGCCAAG 300
||| ||||||| ||||||||||| | ||||| |||| |||||| |||||||| ||||||
Sbjct 241 CACCTAACCCGCCCGGAGCTTCTCCATCGCCGGTCACGCAACCTAAAGCAGCTCGCCAAG 300
Query 301 TGTTATAGAGACAATTATTGGGCTTTAATGGAGGATGTCAAGGCACAACACAGGGATTAT 360
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 301 TGTTATAGAGACAATTATTGGGCTATAATGGAGGATGTCAAGGCGCAACACAGGGATTAT 360
Query 361 TGGTGGAAGTATGGGATTAGTCAGTTTAAAGACGAAAATAATCAATCGAATAAGAGACGG 420
|||||||||||||||||||||| ||||||||||||| | || ||||||||||||||||||
Sbjct 361 TGGTGGAAGTATGGGATTAGTCCGTTTAAAGACGAACAGAACCAATCGAATAAGAGACGG 420
Query 421 AGGCTTGGTCAAGAGGGAGATATCGGAGATGGTGGTGATGCTGTTGAAGGTAGTGGAGAC 480
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 AGGCTTGGTCAAGAGGGAGATATCGGAGA---TGGTGATGCTGTTGAAGGTAGTGGAGAT 477
Query 481 AATGTTACTAAC-A--A---T-G--ATGGTGTTAAGAGTGATCAGTATGCGAATAGTAAT 531
|||| || |||| | | | | |||||||||||||||||||||||||||||||||||
Sbjct 478 AATGGTAATAACAATGATGGTGGTAATGGTGTTAAGAGTGATCAGTATGCGAATAGTAAT 537
Query 532 TGTGGGAGTTGTATGTATGGATGCAAAGCTAAAGCTATGGCGCTTACGAAATACTGTCAA 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AGTGGGAGTTGTATGTATGGATGCAAAGCTAAAGCTATGGCGCTTACGAAATACTGTCAG 597
Query 592 TTGCATATTCTCAAGGATAGTAAGCAGAAGCTCTACACTGGTTGCACAAACGTCATTAAA 651
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 598 CTGCATATTCTTAAGGATAGTAAGCAGAAGCTCTACACTGGTTGTACAAACGTCATTAAA 657
Query 652 CGAGCCCCAGCAGGACCATTACTTTGTGGAAAACCAACACTTGCGTCGACTGTTCCTGCA 711
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 658 CGAGCTCCAGCAGGACCATTACTTTGTGGAAAACCAACACTTGGGTCGACTGTTCCTGTA 717
Query 712 CTGTGTAATATACACTTCCAGAAAGCCCAAAAGCATGTGGCTAAAGCTTTAAAGGATGCT 771
|| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 718 CTCTGTAATGTACACTTCCAGAAAGCCCAAAAGCATGTTGCTAAAGCTTTAAAGGATGCT 777
Query 772 GGTCATAATGTCTCTTCAACAAGCAAGCCTCCCCCAAAGCTCCATGTTATAGTAGCTGCG 831
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 778 GGTCACAATGTCTCTTCAACAAGCAAGCCTCCCCCGAAGCTCCATGTTATAGTAGCTGCG 837
Query 832 TTTGTGCATCATATTCAAGCGAAACGAAAAAATCCACAGAAGGAGTGTAAACTTAAAAGT 891
|||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct 838 TTTGTGCATCATATTCAAGCAAAACGAAAAAATCCACACAAGGATTGTAAACTTAAAAGT 897
Query 892 GTAGTAAAAGAAGAAAATACAAGCTGAGTTGAGCTGTTAGCGTTGCCAGAAGTTATTTTT 951
||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||
Sbjct 898 GTAGTAAAAGAAGAAAATACAAGCTGAGTCAAGCTGTTAGCGTTCCCAGGAGTTATTTCA 957
Query 952 GTGTATGTCCCAGAAGGGAAAAGGTGAGGATCTCTGCCTTACTATATCATTCTAAGAAGT 1011
|||||||||| |||||||||||||| ||| ||| ||||| | || ||||||||||||
Sbjct 958 GTGTATGTCC-AGAAGGGAAAAGGTCAGGGTCTTTGCCT-A--ATG--ATTCTAAGAAGT 1011
Query 1012 GACATAAAACGTATTATGTTGCGCTCTTAATCGTCTACAGATTTTGTTACAGTGT----- 1066
|| ||||||| ||| |||||||||||| | || ||||||||||||||| ||||||
Sbjct 1012 GAAATAAAACTTAT-ATGTTGCGCTCTGATTCTTCTACAGATTTTGTTTCAGTGTCCTGT 1070
Query 1067 AGGTATCGGATGTT-T--ATCTGCCCTGAGCTATTAAGAGAGGTTTTGTTACAGTGTCCG 1123
||||||| |||||| | || ||| |||||||||||||||||||||||||||||||||
Sbjct 1071 AGGTATCAGATGTTGTGTATATGCGCTGAGCTATTAAGAGAGGTTTTGTTACAGTGTCAT 1130
Query 1124 GTAGGGTATAGTAGTTTAGATAGTGGTAGTTTATT 1158
|||||||||||||| | || |||||||||||||||
Sbjct 1131 GTAGGGTATAGTAGCTAAGGTAGTGGTAGTTTATT 1165
Score = 91.6 bits (49), Expect = 1e-17
Identities = 53/55 (96%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 1212 GTTGGAACTCATTCTAACATTTGGAGATGTCCATTTCAGTTTAGTTGCAATTTTG 1266
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1166 GTTGGCACTCATTCTAACATTTGGAGATGTCCATTTCAGTTTTGTTGCAATTTTG 1220
> Ahg898320 jgi|Araly1|898320|Al_scaffold_0005_2286
Length=873
Score = 861 bits (466), Expect = 0.0
Identities = 776/917 (85%), Gaps = 55/917 (6%)
Strand=Plus/Plus
Query 13 ATGGCGTCAGCTTCCAAGAACATTCAGCAAAACCCTTTCTCCTCGAAACCACCACGGCCT 72
|||||||||||| ||||||||||| ||||||| |||||||||| ||||| ||| |||||
Sbjct 1 ATGGCGTCAGCTCCCAAGAACATTGAGCAAAAGCCTTTCTCCTTAAAACCCCCAAGGCCT 60
Query 73 CCGTATTCCTCCGGCGCTGCATCAACAACC-GCAGTGGCTTCCACCTCAGCCGAGCCCCT 131
|||| |||||||||||||| ||| ||||| | || |||||||| |||| || |||
Sbjct 61 CCGTCTTCCTCCGGCGCTGTATCTTCAACCTTC-GTTGCTTCCACTTCAGTAGA-ACCC- 117
Query 132 AATTCGAAACTCTACCTTAAATCCTAACCCTAGCACCAGCGGCTTACCGTCGACATCGAA 191
| ||| | || || |||||||||||||| | || |||||| ||||| |||||
Sbjct 118 ----C-AAA-T-TA---GGAACCCTAACCCTAGCACAAACGCCTTACCATCGACCTCGAA 167
Query 192 TTCACCGATTACGATGTCACAAGAAGATGAAATCCTCGCACGCTCCAGTCACAT-A-ACC 249
|||||| |||||||||||||||||||||||| | |||||||||||||||||| | | |||
Sbjct 168 TTCACCAATTACGATGTCACAAGAAGATGAATTACTCGCACGCTCCAGTCACCTCACACC 227
Query 250 CGGTCGGAGCTTCTCA-AACGCCGATCACACAACCTGAAGCAGCTGGCCAAGTGTTATAG 308
| | |||| ||| | ||||||| ||||||| || |||||||| |||||||| ||||
Sbjct 228 C--CCAGAGC-TCTTACGACGCCGAGCACACAATCTTAAGCAGCTCGCCAAGTGCTATAA 284
Query 309 AGACAATTATTGGGCTTTAATGGAGGATGTCAAGGCACAACACAGGGATTATTGGTGGAA 368
| || ||||||||||||||||||||||| ||||| | |||||||||||||||||||| ||
Sbjct 285 AAACCATTATTGGGCTTTAATGGAGGATCTCAAGACGCAACACAGGGATTATTGGTGCAA 344
Query 369 GTATGGGATTAGTCAGTTTAAAGACGAAAATAATCAATCGAATAAGAGACGGAGGCTTGG 428
|||||||||||||||||| |||||| || | |||||||||||||||||||||||||||||
Sbjct 345 GTATGGGATTAGTCAGTTCAAAGACCAACAGAATCAATCGAATAAGAGACGGAGGCTTGG 404
Query 429 TCAAGAGGGAGATATCGGAGATGGTGGTGATGCTGTTGAAGGTAGTGGAGACAATGTTAC 488
|| ||| |||| | | | | | || || ||||||||||||||||| || | |
Sbjct 405 TCCAGAAGGAG--A----A-A---TCG-GA-GCCGTTGAAGGTAGTGGAGATAA-G--GC 449
Query 489 TAACAATGATGGTGTTAA-GAGTGATCAGTATGCGAATAGTAATTGTGGGAGTTGTATGT 547
| |||||||||| ||| | ||||| |||||| || | || |||||| |||||||
Sbjct 450 T---AATGATGGTGGTAATG-GTGATGTGTATGC-AA-A-CAACAATGGGAGCTGTATGT 502
Query 548 ATGGATGCAAAGCTAAAGCTATGGCGCTTACGAAATACTGTCAATTGCATATTCTCAAGG 607
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
Sbjct 503 ATGGATGCAAAGCTAAAGCTATGGCGCTTACCAAATACTGTCAACTGCATATTCTCAAAG 562
Query 608 ATAGTAAGCAGAAGCTCTACACTGGTTGCACAAACGTCATTAAAC-GAGCCCCAGCAGGA 666
||||||||||||||||||||||||||||||||||||||| | ||| || | |||||||||
Sbjct 563 ATAGTAAGCAGAAGCTCTACACTGGTTGCACAAACGTCA-TCAACAGATCTCCAGCAGGA 621
Query 667 CCATTACTTTGTGGAAAACCAACACTTGCGTCGACTGTTCCTGCACTGTGTAATATACAC 726
||||||||||||||||||||||||||||| ||||||||||||| |||||||||| | |||
Sbjct 622 CCATTACTTTGTGGAAAACCAACACTTGCATCGACTGTTCCTGTACTGTGTAATGTGCAC 681
Query 727 TTCCAGAAAGCCCAAAAGCATGTGGCTAAAGCTTTAAAGGATGCTGGTCATAATGTCTCT 786
| ||||| ||| |||||| |||| || ||||||||||| |||||||||||||||||||||
Sbjct 682 TACCAGAGAGCACAAAAGAATGTTGCCAAAGCTTTAAAAGATGCTGGTCATAATGTCTCT 741
Query 787 TCAACAAGCAAGCCTCCCCCAAAGCTCCATG-TTATAGTAGCTGCGTTTGTGCATCATAT 845
||||||||||||||||||||||||||||||| || |||||||||| ||||||||||| ||
Sbjct 742 TCAACAAGCAAGCCTCCCCCAAAGCTCCATGCTT-TAGTAGCTGCATTTGTGCATCACAT 800
Query 846 TCAAGCGA-A-ACGAAAAAATCCACAGAAGGAGTG-TAAACTTAAAAGTGTAGTAAAAGA 902
|||||| | | | ||||||| |||| ||||| || |||||||||||| |||||||||||
Sbjct 801 TCAAGC-ACAGA-GAAAAAAGGCACACAAGGA-TGGTAAACTTAAAAGCGTAGTAAAAGA 857
Query 903 AGAAAAT-ACAAGCTGA 918
||||| | |||||||||
Sbjct 858 AGAAA-TGACAAGCTGA 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47424908748
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5