BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31610.1
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482088 jgi|Araly1|482088|fgenesh2_kg.4__1148__AT2G31610.1 1655 0.0
Ahg485780 jgi|Araly1|485780|fgenesh2_kg.5__1772__AT3G53870.1 1027 0.0
Ahg493615 jgi|Araly1|493615|fgenesh2_kg.7__3048__AT5G35530.1 774 0.0
> Ahg482088 jgi|Araly1|482088|fgenesh2_kg.4__1148__AT2G31610.1
Length=1045
Score = 1655 bits (896), Expect = 0.0
Identities = 999/1047 (95%), Gaps = 13/1047 (1%)
Strand=Plus/Plus
Query 1 TGATAACGAACACGAGCTTACCGATTCTC-TTCGTCTCAACATTTAGGGTTTCAGAGATC 59
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 TGATAACGAACACGAGCTTACCGATTCTCTTTCGTCTCAACATTTAGGGTTTCAGAGATC 60
Query 60 GGC-T--GATTTTCACATCCACAAGTATGGCGACTCAAATCAGCAAGAAGAGAAAGTTTG 116
||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 GGCTTCCGATTTTCACATCCACAAACATGGCGACTCAAATCAGCAAGAAGAGAAAGTTTG 120
Query 117 TAGCGGATGGTGTATTCTACGCTGAATTGAATGAGGTTCTCACAAGAGAGCTAGCAGAGG 176
|||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 121 TAGCAGATGGTGTATTCTACGCTGAATTGAATGAAGTTCTCACCAGAGAGCTTGCAGAGG 180
Query 177 ATGGTTACTCTGGTGTTGAGGTTAGGGTTACTCCAATGAGGACTGAGATTATCATCAGAG 236
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATGGTTACTCTGGTGTTGAAGTTAGGGTTACTCCAATGAGGACTGAGATTATCATCAGAG 240
Query 237 CTACTCGTACTCAGAATGTTCTTGGTGAGAAGGGGAGGAGAATTAGGGAATTGACATCTC 296
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 241 CTACACGTACTCAGAATGTTCTCGGTGAGAAGGGGAGGAGAATTAGGGAATTGACATCTC 300
Query 297 TTGTCCAGAAGAGATTCAAGTTTCCAGTTGACAGTGTTGAGCTCTATGCTGAGAAGGTTA 356
||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 301 TTGTCCAGAAGAGATTCAAGTTTCCTGTTGACAGTGTTGAGCTTTATGCTGAAAAGGTTA 360
Query 357 ACAACAGAGGTCTCTGTGCCATTGCTCAGGCTGAGTCTCTACGTTACAAGCTTCTCGGTG 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 ACAACAGAGGTCTCTGTGCCATTGCTCAGGCTGAGTCTCTACGTTACAAGCTTCTTGGTG 420
Query 417 GTCTTGCTGTTCGCAGGGCCTGTTATGGTGTTTTGAGATTTGTTATGGAGAGTGGAGCTA 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTCTTGCTGTTCGCAGGGCCTGTTATGGTGTTTTGAGATTTGTTATGGAGAGTGGAGCTA 480
Query 477 AGGGATGTGAGGTCATCGTGAGTGGAAAGCTCCGTGCTGCACGTGCTAAGTCCATGAAGT 536
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 481 AGGGATGCGAGGTCATCGTGAGTGGAAAGCTCCGTGCTGCACGTGCTAAGTCGATGAAGT 540
Query 537 TCAAGGATGGTTACATGGTTTCATCTGGTCAACCAACTAAGGAATACATCGA-TGCTGCA 595
||| ||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct 541 TCATGGATGGTTACATGGTTTCATCTGGTCAACCAACTAAGGAATACATTGACT-CTGCA 599
Query 596 GTGAGACATGTTTTGCTCAGACAGGGGGTGTTGGGAATCAAGGTGAAGATCATGCTTGAC 655
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTGAGACATGTTTTGCTTAGACAGGGGGTGTTGGGAATCAAGGTGAAGATCATGCTTGAT 659
Query 656 TGGGACCCTACGGGCAAATCAGGACCAAAGACACCATTGCCTGATGTTGTGATCATTCAT 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGGGACCCTACGGGCAAATCAGGACCAAAGACACCATTGCCTGATGTTGTGATCATTCAT 719
Query 716 GCTCCTAAAGATGATGTTGTCTAC-TCTGCACCTGCTCAGGCTGCTGCTCCAGTTACTCT 774
||||||||||||||||||||| || || || |||||||||| ||||||||||||||||||
Sbjct 720 GCTCCTAAAGATGATGTTGTCAACATC-GCGCCTGCTCAGGTTGCTGCTCCAGTTACTCT 778
Query 775 TGTGCAAGAAGCTCCACTCACAACCGTAGATTACCCTGAGATGATTCCTCCAGTGGCCTA 834
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TGTGCCAGAGGCTCCACTCACAACCGTAGATTACCCTGAGATGATTCCTCCAGTGGCCTA 838
Query 835 GAGAAGACCTTTTTT-ACTATTACTCCATGGGATTTTGTTCTTTTTGTTATAACTTTTCT 893
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 839 GAGAAGACCTTTTTTTACTATTACTCCATGGGATCTTGTTCTTTTTGTTATAACTTTGCT 898
Query 894 ACTT-TT--GACACTCTCTAGTCGTATCTCTTATATCCTCCAAGCAGACAAGTTTTTTCT 950
|||| || |||| || ||||||||||||||||||||||| |||||| | ||||||||||
Sbjct 899 ACTTCTTTTGACAGTCGCTAGTCGTATCTCTTATATCCTCAAAGCAGTCGAGTTTTTTCT 958
Query 951 CATGTTGTTTCTTAACCTATGTCAA-GTTTTCTGGAGGTTGAATGCTTTTAGTTCCATGA 1009
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 959 CATGTTGTTTCTTAACCTATGTCAAAGTTTTGTGGAGGTTGAATGCTTTTAGTTCCATGA 1018
Query 1010 tttttttGTTCTTAAGACTCGTAATAA 1036
||||||| ||||||||||| ||||||
Sbjct 1019 ATTTTTTGGTCTTAAGACTCTTAATAA 1045
> Ahg485780 jgi|Araly1|485780|fgenesh2_kg.5__1772__AT3G53870.1
Length=973
Score = 1027 bits (556), Expect = 0.0
Identities = 720/799 (90%), Gaps = 11/799 (1%)
Strand=Plus/Plus
Query 42 TTTAGGGTTTCAGAGATCGGCTGATTTTCACATCCACAAGTATGGCGACTCAAATCAGCA 101
||||||||||||||||||||| |||||||||| ||||| ||| ||||||| |||||||
Sbjct 19 TTTAGGGTTTCAGAGATCGGCAAATTTTCACATTCACAAACATGACGACTCAGATCAGCA 78
Query 102 AGAAGAGAAAGTTTGTAGCGGATGGTGTATTCTACGCTGAATTGAATGAGGTTCTCACAA 161
||||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||||
Sbjct 79 AGAAGAGAAAGTTTGTAGCAGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAA 138
Query 162 GAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAGGGTTACTCCAATGAGGACTG 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 GAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAGGGTTACTCCAATGAGGACTG 198
Query 222 AGATTATCATCAGAGCTACTCGTACTCAGAATGTTCTTGGTGAGAAGGGGAGGAGAATTA 281
|||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 199 AGATTATCATCAGAGCGACACGTACTCAGAATGTTCTCGGTGAGAAGGGAAGGAGAATTA 258
Query 282 GGGAATTGACATCTCTTGTCCAGAAGAGATTCAAGTTTCCAGTTGACAGTGTTGAGCTCT 341
||||||||||||| |||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 259 GGGAATTGACATCCCTTGTCCAGAAGAGATTCAAGTTTCCTGTAGACAGTGTTGAGCTTT 318
Query 342 ATGCTGAGAAGGTTAACAACAGAGGTCTCTGTGCCATTGCTCAGGCTGAGTCTCTACGTT 401
|||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 319 ATGCCGAGAAGGTCAACAACAGAGGTCTCTGTGCCATTGCTCAAGCTGAATCTCTACGAT 378
Query 402 ACAAGCTTCTCGGTGGTCTTGCTGTTCGCAGGGCCTGTTATGGTGTTTTGAGATTTGTTA 461
||||||||||||||||||| |||||||| ||||| || |||||||| ||||| |||||||
Sbjct 379 ACAAGCTTCTCGGTGGTCTCGCTGTTCGTAGGGCTTGCTATGGTGTATTGAGGTTTGTTA 438
Query 462 TGGAGAGTGGAGCTAAGGGATGTGAGGTCATCGTGAGTGGAAAGCTCCGTGCTGCACGTG 521
|||||||||||||||||||||| |||||||| |||||||||||||||||||| ||| | |
Sbjct 439 TGGAGAGTGGAGCTAAGGGATGCGAGGTCATTGTGAGTGGAAAGCTCCGTGCAGCAAGAG 498
Query 522 CTAAGTCCATGAAGTTCAAGGATGGTTACATGGTTTCATCTGGTCAACCAACTAAGGAAT 581
| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 499 CCAAGTCTATGAAGTTCAAGGATGGTTACATGGTGTCATCTGGTCAACCAACTAAGGAAT 558
Query 582 ACATCGA-TGCTGCAGTGAGACATGTTTTGCTCAGACAGGGGGTGTTGGGAATCAAGGTG 640
|||| || | |||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 559 ACATTGACT-CTGCAGTGAGACATGTTTTGCTTAGACAGGGTGTGTTGGGAATCAAGGTT 617
Query 641 AAGATCATGCTTGACTGGGACCCTACGGGCAAATCAGGACCAAAGACACCATTGCCTGAT 700
||| | |||||||| ||||| |||| ||||||||| ||||||| ||||||||||||||||
Sbjct 618 AAGGTTATGCTTGATTGGGATCCTAAGGGCAAATCCGGACCAATGACACCATTGCCTGAT 677
Query 701 GTTGTGATCATTCATGCTCCTAAAGATGATGTTGTCT-AC-TCTGCACCTGCTCAGGCTG 758
||||||||||||||| ||||||| || || | | || || | |||||||||||||| ||
Sbjct 678 GTTGTGATCATTCATTCTCCTAAGGAAGAAGA-GACTTACGT-TGCACCTGCTCAGGTTG 735
Query 759 CTGCTCCAGTTACTCTTGT-GCAAGAAGCTCCACTCACAACCGTAGATTACCCTGAGATG 817
|||| || | | |||| | || ||||||||||| ||| ||||||||||||| | ||||
Sbjct 736 CTGCCCCGGCTGCTCTCATAGCG-GAAGCTCCACTTACAGCCGTAGATTACCCAGCGATG 794
Query 818 ATTCCTCCAGTGGCCTAGA 836
|| || | ||| |||||||
Sbjct 795 AT-CC-C-AGTCGCCTAGA 810
> Ahg493615 jgi|Araly1|493615|fgenesh2_kg.7__3048__AT5G35530.1
Length=960
Score = 774 bits (419), Expect = 0.0
Identities = 635/738 (86%), Gaps = 19/738 (3%)
Strand=Plus/Plus
Query 83 ATGGCGACTCAAATCAGCAAGAAGAGAAAGTTTGTAGCGGATGGTGTATTCTACGCTGAA 142
|||||||| || |||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct 97 ATGGCGACCCAGATCAGCAAGAAGAGAAAGTTCGTAGCCGATGGTGTGTTTTACGCTGAG 156
Query 143 TTGAATGAGGT-TCTCACAAGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAG 201
| |||||||| | | || |||||||| || ||||||||||||||||| ||||||||| |
Sbjct 157 CTCAATGAGGTGT-TAACCAGAGAGCTTGCTGAGGATGGTTACTCTGGCGTTGAGGTTCG 215
Query 202 GGTTACTCCAATGAGGACTGAGATTATCATCAGAGCTACTCGTACTCAGAATGTTCTTGG 261
|| ||||| ||| | |||||||| ||||| ||||| ||||||||||| || ||||| ||
Sbjct 216 TGTCACTCCTATGCGTACTGAGATCATCATTAGAGCCACTCGTACTCAAAACGTTCTCGG 275
Query 262 TGAGAAGGGGAGGAGAATTAGGGAATTGACATCTCTTGTCCAGAAGAGATTCAAG-TTT- 319
||||||||| ||||| ||||||||||||||||||||||| || ||||||||| || |||
Sbjct 276 TGAGAAGGGAAGGAGGATTAGGGAATTGACATCTCTTGTACAAAAGAGATTC-AGATTTC 334
Query 320 C-CAGTTGACAGTGTTGAGCTCTATGCTGAGAAGGTTAAC-AACAGAGGTCTCTGTGCCA 377
| ||| |||||||||||||| ||||||||||||||| | ||||||||||| ||||| |
Sbjct 335 CTCAG--GACAGTGTTGAGCTTTATGCTGAGAAGGTT-GCTAACAGAGGTCTTTGTGCTA 391
Query 378 TTGCTCAGGCTGAGTCTCTACGTTACAAGCTTCTCGGTGGTCTTGCTGTTCGCAGGGCCT 437
||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |
Sbjct 392 TTGCTCAGGCTGAGTCTCTTCGTTACAAGCTTCTTGGTGGTCTTGCTGTTCGTAGGGCTT 451
Query 438 GTTATGGTGTTTTGAGATTTGTTATGGAGAGTGGAGCTAAGGGATGTGAGGTCATCGTGA 497
| |||||||| ||||| ||||||||||||||||||||||| ||||| || ||||| ||||
Sbjct 452 GCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAAGGATGCGAAGTCATTGTGA 511
Query 498 GTGGAAAGCTCCGTGCTGCACGTGCTAAGTCCATGAAGTTCAAGGATGGTTACATGGTTT 557
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 512 GTGGAAAACTCCGTGCTGCACGTGCTAAGTCGATGAAGTTCAAGGATGGTTACATGGTTT 571
Query 558 CATCTGGTCAACCAACTAAGGAATACATCGATGCTGCAGTGAGACATGTT-TTGCTCAGA 616
| || ||||| ||||| || |||||||| ||||||||||| || || ||| || || |||
Sbjct 572 CCTCAGGTCAGCCAACCAAAGAATACATTGATGCTGCAGTTAGGCACGTTCTT-CTTAGA 630
Query 617 CAGGGGGTGTTGGGAATCAAGGTGAAGATCATGCTTGACTGGGACCCTACGGGCAAA-TC 675
||||| ||| | ||| ||||||||||||||||||||||||||||||| | ||||||| |
Sbjct 631 CAGGGTGTGCTAGGACTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGCAAACT- 689
Query 676 AGGACCAAAGACACCATTGCCTGATGTTGTGATCATTCATGCTCCTAAAGATGATGTTGT 735
|||||| | ||||||||||||||||||||||||||| ||| | || ||||| |||| |||
Sbjct 690 AGGACCGATGACACCATTGCCTGATGTTGTGATCATCCATACACCGAAAGAAGATGATGT 749
Query 736 CTAC-TCTGCACCTGCTCAGGCTGCTGCTCC-AGTTACTCTTGTGCAAGAAGCTCCACTC 793
||| || ||||||||||||| || |||||| | | ||||||| | ||||| ||| |
Sbjct 750 TTACATC-GCACCTGCTCAGGTTGTTGCTCCTACTG-CTCTTGTACCGGAAGCCCCATTA 807
Query 794 ACAACCGTAGATTA-CCC 810
|||||| |||||| |||
Sbjct 808 ACAACCACAGATTATCCC 825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40562783688
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5