BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31620.1
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900966 jgi|Araly1|900966|Al_scaffold_0004_1616 573 6e-163
Ahg914473 jgi|Araly1|914473|Al_scaffold_0001_4727 569 8e-162
Ahg318931 jgi|Araly1|318931|fgenesh1_pm.C_scaffold_3001947 390 7e-108
> Ahg900966 jgi|Araly1|900966|Al_scaffold_0004_1616
Length=744
Score = 573 bits (310), Expect = 6e-163
Identities = 370/399 (93%), Gaps = 4/399 (1%)
Strand=Plus/Plus
Query 366 CGACAACTGTTTTCTCTACATTTCCGAGATATATACC-TACGAGAAGATTGATTTCAAGC 424
||||||||||||||||||||||||||||||||||||| | | ||||| | |||| |||||
Sbjct 342 CGACAACTGTTTTCTCTACATTTCCGAGATATATACCTTTC-AGAAGGTCGATTACAAGC 400
Query 425 ACTATTTGTATTTGCACAATGCCAAAGATGTGAGCGGCAATAAAAAGTTGTTCAACAAGA 484
||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||
Sbjct 401 ACTATTTGTATTTGCACAATGCCAAAGATGTGAACGGCAATACAAAGTTGTTCAATAAGA 460
Query 485 ACACAAAGGCTCTCCTAGATAAGCTCAAGGAGAAAGCAATTCGTAAAGAACAAGAGCCTT 544
|||||| |||||||||| ||||||| ||||||||| ||| ||||||||||||||||||||
Sbjct 461 ACACAAGGGCTCTCCTATATAAGCTGAAGGAGAAAACAACTCGTAAAGAACAAGAGCCTT 520
Query 545 ACACAAGAGACTACATGTATGCAG-CGGGGGAGGAAAGTCTCGGGACGACGAAATTGTAT 603
|||||| ||||||||||||||| | ||||||| |||||||||||||||| |||||||||
Sbjct 521 ACACAAAAGACTACATGTATGC-GACGGGGGAAGAAAGTCTCGGGACGATGAAATTGTAC 579
Query 604 GGGATGATGCAGTGTACACAAGACTTATCAGTTAAAAATTGCAGTGTGTGTTTGGATTCG 663
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 580 GGAATGATGCAGTGTACACAAGACTTATCGGTTAAAAATTGCAGTGTGTGTTTGGATTCG 639
Query 664 ATTATTGCAAAGCTTCCCAGATGCTGCAACGGTAAACAAGGAGGAAGAGTTTTGAATCCG 723
|||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 640 ATTATTGCGAAGCTTCCCAGGTGTTGCAACGGTAAACAAGGAGGAAGAGTTTTGAATCCG 699
Query 724 AGTTGTACTTTTAGGTACGAGCTCTATCCTTTTGTAAAA 762
|||||||||||||| || ||||| || ||||||||||||
Sbjct 700 AGTTGTACTTTTAGATATGAGCTTTACCCTTTTGTAAAA 738
Score = 440 bits (238), Expect = 6e-123
Identities = 296/323 (92%), Gaps = 8/323 (2%)
Strand=Plus/Plus
Query 1 ATGTTTTCTTCCTCTGTATCCATCTCTATCTTGGTCGTGGTGGCCATGCAATTCTCTTTT 60
|||| ||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||
Sbjct 10 ATGTCTTCTTCCTCTGTATCGATCTCTATCTTGGCCGTGGTGGCCATGCAACTCTCTTTT 69
Query 61 ATCCACAA-TGTTTTGTCCCTAAATCAGACCAATTCGTATCTGCAACACATATGCATCAA 119
|| || || ||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 70 ATGCA-AAGTGTTTTGTCCCTAAACCAGACCAATGAGTATCTGCAACACATATGCATCAA 128
Query 120 CAGTGAAGGAAAATACAAGGCA-AAGAATTCATACGAGAGCAGA-CTCAAAGATCATCTC 177
||||||||||| ||||||| || |||| ||||||||||||| || |||||||||||||||
Sbjct 129 CAGTGAAGGAACATACAAG-CAGAAGAGTTCATACGAGAGC-GAACTCAAAGATCATCTC 186
Query 178 GACAGTATGTCTAACATTCTAGACTACGGTTTCATCCACGGTGTTGGTGGTGCGGATTCT 237
|||| |||||||||||||||||||||||||||| |||||||||| |||||||||| |||
Sbjct 187 GACATTATGTCTAACATTCTAGACTACGGTTTCGTCCACGGTGTAGGTGGTGCGGGTTCC 246
Query 238 A-GTACCTACTACATCAAGGCCCAATGTCGGGGAGATGCCTCCGAATCCAAGTGCCGCTC 296
| | |||||||||||||||| || ||||||||| ||||||||||||||||||||||||||
Sbjct 247 AAG-ACCTACTACATCAAGGTCCTATGTCGGGGCGATGCCTCCGAATCCAAGTGCCGCTC 305
Query 297 TTGCCTCTTTACCGCCTTCTCTG 319
|||||||| ||||||||||||||
Sbjct 306 TTGCCTCTATACCGCCTTCTCTG 328
> Ahg914473 jgi|Araly1|914473|Al_scaffold_0001_4727
Length=810
Score = 569 bits (308), Expect = 8e-162
Identities = 603/743 (81%), Gaps = 30/743 (4%)
Strand=Plus/Plus
Query 31 TTGGTCGTGGTGGCCATGCAATTCTCTTTTATCCACAATGTTTTGTCCCTAAATCAGACC 90
||||| |||||||| |||| | ||| |||||| || ||| ||||| ||||| ||||||
Sbjct 31 TTGGTTGTGGTGGCAATGCTACTCTTTTTTATACAGGGTGTATTGTCTCTAAACCAGACC 90
Query 91 AATTCGTATCTGCAACACATATGCATCAACAGTGAAGGAAAATACAAGGCAAAGAATTCA 150
||| | |||||||||||||||||| |||||||||| || | ||||||| | | | ||||
Sbjct 91 AATGCTTATCTGCAACACATATGCGTCAACAGTGACGGGATATACAAGTCGGATAGTTCA 150
Query 151 TACGAGAGCAGA-CTCAAAGATCAT-CTCGACAGTATGTC-TAACATTCTAGACTACGGT 207
|| ||||||| | ||||| ||| | ||||| |||||| | || |||||||||||||
Sbjct 151 TATGAGAGCA-ATGTCAAACATC-TCCTCGAGTTTATGTCTTCAC-CTCTAGACTACGGT 207
Query 208 TTCATCCA-CGGTGTTGGTGGTGCGGATTCTAGTACCTACTACATCAAGGCCCAATGTCG 266
|||| ||| |||| || || | | | || | |||| |||| ||| |||||
Sbjct 208 TTCA-CCAGCGGTACCAGTAGT----A--AT-G-ACAT-CTACGCCAAGTTCCAGTGTCG 257
Query 267 GGGAGATGCCTCCGAATCCAAGTGCCGCTCTTGCCTCT-TTACCGCCTTCTCTGGGATTC 325
||| || | ||| ||||||||||||||||||||||| | ||||||||||||| |||||
Sbjct 258 GGGCGACGTCTCTGAATCCAAGTGCCGCTCTTGCCT-TACCACCGCCTTCTCTGCGATTC 316
Query 326 TTAGGAGATGTCCGAACAACAGAGGGAGAATAATATGGTACGACAACTGTTTTCTCTACA 385
||| ||||||||||| |||| |||||||||||||||||||||||||||| ||||| ||
Sbjct 317 GTAGAAGATGTCCGAATAACAAAGGGAGAATAATATGGTACGACAACTGTGTTCTCGACC 376
Query 386 TTTCCGAGATATATACCTACGA-GAAGATTGATTTCAAGCACTA-TTTGTATTTGCACAA 443
|||| ||| |||||||| || ||| | |||| ||||||| | ||| ||| || ||||
Sbjct 377 TTTCTTCGATTTATACCTATGATAAAG-TCGATTACAAGCAC-AGTTTCTATGTGTACAA 434
Query 444 TGCCAAAGATGTGAGCGGCAATAAAAAGTTGTTCAACAAGAACACAAAGGCTCTCCTAGA 503
|| ||||||||||||||||||| ||||| ||||||||||||||| || ||||||| |
Sbjct 435 CGCGAAAGATGTGAGCGGCAATACAAAGTCGTTCAACAAGAACACGAACACTCTCCTCTA 494
Query 504 TAAGCTCAAGGAGAAAGCAATTCGTAAAGAACAAGAGCCTTACACAAGAGACTACATGTA 563
|||||| ||||||||||||| | | ||||| ||||||| ||||||| ||||||||||||
Sbjct 495 TAAGCTGAAGGAGAAAGCAACTAGGAAAGAGCAAGAGCAGTACACAAAAGACTACATGTA 554
Query 564 TGCAG-CGGGGGAGGAAAGTCTCGGGACGACGAAATTGTATGGGATGATGCAGTGTACAC 622
||| | | ||||| |||||||||||||||| ||||||||| | ||| |||| ||||| |
Sbjct 555 TGC-GACCGGGGAAGAAAGTCTCGGGACGATGAAATTGTACGCAATGGTGCAATGTACGC 613
Query 623 AAGACTTATCAG-TTAAAAATTGCAGTGTGTGTTTGGATTCGATTATTGCAAAGCTTCCC 681
| || ||||| | | |||||||| |||||||||||||||| ||| || | ||||||||
Sbjct 614 AGGATTTATC-GATCAAAAATTGTAGTGTGTGTTTGGATTGGATAATGGGGAAGCTTCCG 672
Query 682 AGATGCTGCAACGGTAAACAAGGAGGAAGAGTTT-TGAATCCGAGTTGTACTTTTAGGTA 740
|||||||||||||||||||||||||||||||||| | ||||| | |||| |||||||||
Sbjct 673 AGATGCTGCAACGGTAAACAAGGAGGAAGAGTTTAT-AATCCCAACTGTAATTTTAGGTA 731
Query 741 CGAGCTCTATCCTTTT-GTAAAA 762
|||||| || |||||| ||||||
Sbjct 732 CGAGCTTTACCCTTTTTGTAAAA 754
> Ahg318931 jgi|Araly1|318931|fgenesh1_pm.C_scaffold_3001947
Length=771
Score = 390 bits (211), Expect = 7e-108
Identities = 587/759 (77%), Gaps = 63/759 (8%)
Strand=Plus/Plus
Query 26 CTATCTTGGTCGTGGTGGCCATGCAATTCTCTTTTATCCACAATGTTTTGTCCCTAAATC 85
||||||||| | |||||||||||||| |||||||| | || ||||||||||||||| |
Sbjct 41 CTATCTTGGCCATGGTGGCCATGCAACTCTCTTTTGTACAGTGTGTTTTGTCCCTAAACC 100
Query 86 AGACCAATTCGTATCTGCAACACATATGCATCAA-CAGTGAAGGAAAATACAAGGCAAAG 144
| || ||| |||||| || ||||||||| | || | || |||||| ||||||| | | |
Sbjct 101 AAACAAATGAGTATCTACACCACATATGCCTTAATC-GTCAAGGAACATACAAGTC-AGG 158
Query 145 -AATTCATACGAGAGCAGA-CTCAA-AGATCATC-TCGACAGTATGTCTAACATTCTAGA 200
| | | ||||||| ||| || || | ||| || || || ||| | |||||
Sbjct 159 TAGTAAAGACGAGAG-AGATCTTAACA-ATC-TCATC--CA-AATG----A-TTTCTA-T 206
Query 201 CTACGGTTTCA-TCCACGGTGTTGGTGGT-GCGGATTCTAGTACCTA-CTACATCAAGGC 257
|| | ||| | | ||| ||| | | | |||| | || | || | |||| |||| ||
Sbjct 207 CT-CAATTTTAGGCGACGTTGTCGTTTTTAGCGG-TGATAATTCC-ATCTACGTCAA-GC 262
Query 258 -CCAATGTCGGGGAGA-TGCCTCCGA-ATCCAAGTGCCGCTCTTGCCTCT-TTACCGCCT 313
||| || ||||| || | ||||| | ||||||||||||||||||||| | ||||||||
Sbjct 263 TCCAGTGCCGGGGGGACT-CCTCC-ACATCCAAGTGCCGCTCTTGCCT-TGATACCGCCT 319
Query 314 TCTCTGGGATTCTTAGGAGATGTCCGAACAACAGAGGGAGAATAATATGGTACGACAACT 373
|||||||| | |||||||| ||||||| | ||||||||||||||||||||||
Sbjct 320 TCTCTGGG------A--AGATGTCCCAACAACA-A---AGAATAATATGGTACGACAACT 367
Query 374 GTTTTCTCTAC-ATTTCCGA-GATAT-ATACCTACGAG-AAGATTGATTTCAAGCACTAT 429
|| ||||| || |||| | | | | |||| || | | ||||| |||| | || || ||
Sbjct 368 GTGTTCTC-ACAATTT-TAACG-TTTCATACGTATG-GCAAGATCGATTACCAGAACAAT 423
Query 430 TTGTAT-TTGCACAATGCCAAA-GATGTGAGCGGCAATAAAAAGTT-GTTCAACAAGAAC 486
|| ||| || | ||||| |||| ||||||||||| ||| ||| || ||||||| ||||
Sbjct 424 TTCTATATTTC-CAATG-CAAAGGATGTGAGCGGTGATACAAA-TTCGTTCAACGAGAAG 480
Query 487 ACAAAGGCTCTCCTAGATAAGCTCAAGGAGAAAGCAATTCGTAAAGAACAAGAGCCTTAC 546
|| | ||||||||| ||||||| ||||||||||||| | |||||||| || | || |
Sbjct 481 ACGAGGGCTCTCCTCTATAAGCTGAAGGAGAAAGCAAGTAGTAAAGAA-AACATCCCCA- 538
Query 547 ACAAG--AGACTACATGTATGCAGCGGGGGAGGAAAGTCTCGGGACGACGAAATTGTATG 604
||||| | | ||| | |||||| | ||||||||||||||||||| || ||||||||| |
Sbjct 539 ACAAGAAAAATTACTTATATGCAACAGGGGAGGAAAGTCTCGGGAAGATGAAATTGTACG 598
Query 605 GGATGATGCAGTGTACACAAGACTTATCAGTTAAAAATTGCAGTGTGTGTTTGGATTCGA 664
||| ||||||||||||||||||||||| | |||||||| |||||||||||| | | ||
Sbjct 599 CAATGGTGCAGTGTACACAAGACTTATCAATAAAAAATTGTAGTGTGTGTTTGAACTGGA 658
Query 665 TTATTGCAAAGCTTCCCAGATGCTGCAACGGTAAACAAGGAGGAAGAGTTTTGAATCCGA 724
|| |||| ||| |||||| |||||||||||||||||||||||||||| |||||| | | |
Sbjct 659 TTCTTGCGAAGTTTCCCAAATGCTGCAACGGTAAACAAGGAGGAAGATTTTTGAGTACAA 718
Query 725 GTTGTACTTTTAGGTACGAGCTCTATCCTTTTGTAAAAC 763
|||||| ||||||||| ||||| || || ||||||||||
Sbjct 719 GTTGTAATTTTAGGTATGAGCTTTACCCCTTTGTAAAAC 757
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28325327331
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5