BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31650.1
Length=3365
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933711 jgi|Araly1|933711|scaffold_401699.1 4726 0.0
Ahg311665 jgi|Araly1|311665|fgenesh1_pm.C_scaffold_1000445 972 0.0
> Ahg933711 jgi|Araly1|933711|scaffold_401699.1
Length=3241
Score = 4726 bits (2559), Expect = 0.0
Identities = 3013/3231 (93%), Gaps = 36/3231 (1%)
Strand=Plus/Plus
Query 1 ATGGCGTGTTTTTCTAACGAAACCCAGATCGAAATTGATGTCCACGATCTAGTGGAAGCT 60
||||| ||| |||| || || |||||||||||||||||||| ||||| || ||||| |||
Sbjct 21 ATGGCTTGTGTTTCGAATGATACCCAGATCGAAATTGATGTTCACGACCTCGTGGATGCT 80
Query 61 CCGATTCGCTACGATTCTATTGAGAGTATCTACTCT-ATTCCTTCATCGGCATTGTGCTG 119
|| ||||| |||||||||||||||||||| |||||| |||| || ||||| ||||||||
Sbjct 81 CCAATTCGTTACGATTCTATTGAGAGTATGTACTCTGTTTCC-TCGTCGGCTTTGTGCTG 139
Query 120 TGTTAATGCCGTTGGTTCTCACAGTCTGATGTCTAAGAAGGTTAAGGCCCAGAAGCTTCC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 TGTTAATGCCGTTGGTTCTCACAGTCTGATGTCTAAGAAGGTTAAGGCCCAGAAGCTTCC 199
Query 180 GATGATTGAGCAATTCGAGATTGAAGGTAGCGGTGTTAGTGCTAGTGACGATTGTTGTCG 239
||||||||||||||| ||| ||||||||||||| || |||||||||| ||||||||||||
Sbjct 200 GATGATTGAGCAATTTGAGGTTGAAGGTAGCGGCGTGAGTGCTAGTGCCGATTGTTGTCG 259
Query 240 TTCGGATGATTATAAGTTGCGGATTCAGCGTCCTGAGATTGTTCGCGTCTACTATCGTCG 299
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 260 TTCGGATGATTACAAGTTGCGGACTCAGCGTCCTGAGATTGTTCGCGTCTACTATCGTCG 319
Query 300 CCGTAAGAGGCCGCTA-CGGGA-GTGTTTACTAGATCAGGCGGTGGCTGTGAAGACTGAA 357
|||||||||||||| | ||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 320 CCGTAAGAGGCCGC-AGCGGGAGGT-TTTGCTAGATCAGGCGGTGGCTGTGAAGACTGAA 377
Query 358 AGTGTGGAGCTTGATGAAATTGATTGTTTTGAGGAGAAGAAGAGAAGGAAGATTGGTAAT 417
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 378 AGCGTGGAGCTTGATGAAATTGATTGTTTTGAGGAGAAGAAGAAAAGGAAGATTGGTAAT 437
Query 418 TGTGAGTTGGTGAAATCGGGTATGGAGTCGATTGGTTTAAGAAGGTGTAAGGAAAACAAT 477
|| ||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 438 TGCGAGTTGGTGAAATCGGGTATGGATTCTATTGGTTTAAGAAGGTGTAAGGATAACAAT 497
Query 478 GCGTTTAGTGGGAATAAGCAAAATGGGTCATCCCGAAGGAAGGGGTCTTCTAGCAAGAAT 537
||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 498 GCGTTTAGTGGAAATAAGCAAAATGGGTCGTCCCGAAGGAAGGGGTCTTCTATCAAGAAT 557
Query 538 CAGGACAAGGCGACTCTGGCTTCTCGTTCAGCTAAGAAATGGGTCAGGTTGAGTTATGAT 597
|||||||||| | || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 CAGGACAAGGTGTCTTTAGCTTCTCGTTCAGCTAAGAAATGGGTCAGGTTGAGTTATGAT 617
Query 598 GGTGTGGATCCTACAAGTTTCATAGGGCTGCAATGCAAGGTTTTTTGGCCGCTGGACGCT 657
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 618 GGTGCAGATCCTACAAGTTTCATAGGGCTGCAATGCAAGGTTTTTTGGCCACTGGACGCT 677
Query 658 CTTTGGTATGAAGGTTCCATTGTTGGATATAGTGCAGAGAGAAAGCGTTACACTGTC-AA 716
||||||||||||||||| || |||||||||||||| |||||||||||| | |||| | ||
Sbjct 678 CTTTGGTATGAAGGTTCTATCGTTGGATATAGTGCCGAGAGAAAGCGTCATACTG-CTAA 736
Query 717 ATATAGGGATGGATGTGATGAGGATATAGTTTTTGATCGTGAAATGATCAAATTTTTGGT 776
|||| ||||||||| ||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 737 ATATGGGGATGGATATGATGAGGATATAATTCTTGATCGTGAAATGATCAAATTTTTGGT 796
Query 777 TTCTCGTGAAGAGATGGAGCTATTACATCTGAAGTTTTGTACTAGTAATGTGACTGTCGA 836
||||||||||||||||||||| |||||||||||||| ||||||||| |||| ||||| |
Sbjct 797 TTCTCGTGAAGAGATGGAGCTGTTACATCTGAAGTTGTGTACTAGTGATGTAACTGTTGG 856
Query 837 TGGCCGTGATTACGATGAGATGGTTGTATTGGCAGCTACTTTGGACGAATGCCAAGATTT 896
|||||||||||||||||||||||||||||||||||||||| |||| | ||| ||||||||
Sbjct 857 TGGCCGTGATTACGATGAGATGGTTGTATTGGCAGCTACTCTGGAGGGATGTCAAGATTT 916
Query 897 TGAGCCTGGAGACATTGTATGGGCGAAACTAGCTGGTCATGCTATGTGGCCAGCAGTTAT 956
|||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 917 TGAGACTGGTGACATTGTATGGGCAAAACTAGCTGGTCATGCTATGTGGCCAGCAGTTAT 976
Query 957 TGTAGACGAATCCATTATCGGAGAGCGGAAAGGTCTAAACAACAAGGTATCTGGAGGAGG 1016
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 TGTAGATGAATCCGTTATCGGAGAGCGGAAAGGTCTAAACAACAAGGTATCTGGAGGAGG 1036
Query 1017 ATCACTCTTGGTCCAATTTTTTGGAACTCATGATTTTGCTAGAATAAAAGTAAAGCAAGC 1076
||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1037 ATCACTCTTGGTCCAGTTTTTTGGCACTCATGATTTTGCTAGAATAAAAGAAAAGCAAGC 1096
Query 1077 AATCTCATTTATCAAAGGGCTTCTTTCGCCATCTCACCTGAAGTGCAAACAACCTCGGTT 1136
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1097 AATCTCGTTTATCAAAGGGCTTCTCTCGCCATCTCACCTGAAGTGCAAACAACCGCGGTT 1156
Query 1137 TGAAGAGGGCATGCAGGAAGCAAAAATGTATCTGAAGGCACACAGGCTTCCAGAAAGAAT 1196
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||
Sbjct 1157 TGAAGAGGGCATGCAGGAAGCAAAAATGTATCTGAAGGAACATAGGCTTCCAGAAAGGAT 1216
Query 1197 GAGTCAACTTCAAAAGGGAGCTGATTCTGTTGATTCCGATATGGCTAATAGTACAGAAGA 1256
||||||||||||||| |||||||| ||| ||||| || || |||||||||||||||||
Sbjct 1217 GAGTCAACTTCAAAAAGGAGCTGA---TGTCGATTCTGAAATCGCTAATAGTACAGAAGA 1273
Query 1257 GGGAAACTCGGGTGGTGATCTTCTTAATGATGGAGAAGTGTGGTTGAGACCAACAGAACA 1316
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1274 GGGAAACTTGGGTGGTGATCTTTTTAATGATGGAGAAGTGTGGTTGAGACCAACAGAACA 1333
Query 1317 TGTAGACTTCCGGCATATAATAGGGGATCTGCTAATAATAAATCTTGGAAAGGTTGTGAC 1376
||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1334 TGTAGACTTCCTTCATACAATAGGGGATCTGCAAATAATAAATCTTGGAAAGGTTGTGAC 1393
Query 1377 AGACTCTCAGTTTTTCAAGGATGAGAATCATATTTGGCCTGAAGGGTATACGGCGATGAG 1436
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1394 AGACTCTCAGTTTTTCAAGGATGAGAATCATATTTGGCCTGAAGGGTATACGGCTATGAG 1453
Query 1437 AAAGTTCACATCACTCACAGATCATAGTGCATCTGCCTTGTACAAGATGGAAGTGCTCAG 1496
||||||||||||||| | ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1454 AAAGTTCACATCACTAAAAGATCATAGTGTGTCTGCTTTGTACAAGATGGAAGTGCTCAG 1513
Query 1497 AGATGCCGAGACAAAGACTCATCCGCTGTTTATAGTGACTGCAGATAGTGGAGAGCAGTT 1556
|||||||||| ||||||||| || ||||||| |||||||||||||||||||||||||||
Sbjct 1514 AGATGCCGAGTCAAAGACTCGCCCTCTGTTTAGAGTGACTGCAGATAGTGGAGAGCAGTT 1573
Query 1557 CAAAGGGCCTACTCCATCGGCCTGCTGGAACAAAATATATAATAGGATAAAAAAGGTCCA 1616
|||||||| ||||||||||||||||||||| || |||||||| ||||||| |||||||||
Sbjct 1574 CAAAGGGCTTACTCCATCGGCCTGCTGGAATAAGATATATAACAGGATAAGAAAGGTCCA 1633
Query 1617 GAATTCTGAC--A-G-TCCTAATATTTTGGGTGAAGAACTAAATGGATCTGGTACAGACA 1672
||||||| || | | ||||||| ||||||| || ||||||||||||||||||||||| |
Sbjct 1634 GAATTCT-ACTGATGATCCTAATGTTTTGGGGGAGGAACTAAATGGATCTGGTACAGATA 1692
Query 1673 TGTTTGGTCTCTCCAACCCAGAAGTCATTAAACTTGTACAGGATTTATCAAAATCCAGAC 1732
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1693 TGTTTGGTCTTTCCAACCCGGAAGTCATTAAACTTGTACAGGATTTATCAAAATCCAGAC 1752
Query 1733 CATCGTCCCATGTTTCCATGTGCAAAAATAGTTTGGGAAGGCATCAAAATCAGCCTACTG 1792
|||||||| ||||||||||||||||| ||||||||||||||||||||| |||| ||||||
Sbjct 1753 CATCGTCCAATGTTTCCATGTGCAAATATAGTTTGGGAAGGCATCAAAGTCAGGCTACTG 1812
Query 1793 GTTACCGACCTGTCCGTGTTGACTGGAAAGATCTCGATAAGTGCAATGTCTGCCACATGG 1852
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1813 GTTATCGACCTGTCCGTGTTGACTGGAAAGATCTCGATAAGTGCAATGTCTGTTACATGG 1872
Query 1853 ATGAGGAGTATGAGAACAATTTGTTCCTGCAATGTGATAAATGTAGAATGATGGTCCATG 1912
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1873 ATGAGGAGTATGAGAACAATTTGTTCCTGCAGTGTGATAAATGTAGAATGATGGTCCATG 1932
Query 1913 CTAAATGCTATGGAGAGCTAGAACCCTGTGATGGTGCTTTGTGGTTATGCAACTTATGTC 1972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1933 CTAAATGCTATGGAGAGCTAGAACCCTGTGATGGTGCTTTGTGGTTATGCAACTTATGTC 1992
Query 1973 GTCCTGGTGCTCCTGATATGCCTCCACGGTGTTGTCTTTGTCCTGTAGTAGGGGGTGCTA 2032
||||||| ||||||||||| |||||||||||||||||||||||| ||||||| |||||||
Sbjct 1993 GTCCTGGCGCTCCTGATATACCTCCACGGTGTTGTCTTTGTCCTTTAGTAGGTGGTGCTA 2052
Query 2033 TGAAGCCGACAACTGATGGTCGCTGGGCTCATCTGGCTTGTGCTATATGGATCCCAGAAA 2092
|||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 2053 TGAAGCAGACAACTGATGGGCGCTGGGCTCATCTTGCTTGTGCTATATGGATCCCAGAAA 2112
Query 2093 CATGTTTATCTGATGTCAAGAAGATGGAACCTATTGATGGGGTGAATAAAGTCAGCAAGG 2152
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 2113 CATGTTTATCTGATGTCAAGAAGATGGAACCGATTGATGGGGTGAATAAAGTCAGTAAGG 2172
Query 2153 ATCGTTGGAAATTAATGTGCACCATCTGCGGGGTATCTTATGGAGCTTGTATCCAATGTT 2212
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2173 ATCGCTGGAAATTAATGTGCACCATCTGCGGGGTATCTTATGGAGCTTGTATCCAATGTT 2232
Query 2213 CAAACAATTCTTGTCGCGTGGCATATCATCCACTCTGCGCGCGAGCTGCTGGTCTCTGTG 2272
| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2233 CGAACAATTCTTGTCGTGTGGCATATCATCCTCTCTGCGCGCGAGCTGCTGGTCTCTGTG 2292
Query 2273 TTGAGCTTGAGAATGAC-AT-G--T----C---AGT--G-G-AGGGTGAAGAAGCAGATC 2317
|||||||||||||||| || | | | ||| | | ||| ||||||||||||||
Sbjct 2293 TTGAGCTTGAGAATGAGGATAGACTTTTTCTTCAGTCAGTGGAGGATGAAGAAGCAGATC 2352
Query 2318 AGTGTATCCGCATGCTTTCATTCTGCAAGCGACATCGACAAACATCAACTGCCTGCCTAG 2377
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 2353 AGTGTATCCGCATGCTTTCATTCTGCAAGAGGCATCGACAAACATCAACTGCCTGCCTAG 2412
Query 2378 GATCAGAAGACAGGATCAAATCCGCTACTCATAAAACTTCTGAGTATCTCCCACCACCTA 2437
|||||||| ||||||| ||||||| |||||| |||||||| |||||||||||||||||||
Sbjct 2413 GATCAGAAAACAGGATAAAATCCGTTACTCAGAAAACTTCCGAGTATCTCCCACCACCTA 2472
Query 2438 ATCCATCTGGCTGTGCTCGGACAGAGCCTTATAATTGTTTTGGCAGAAGAGGGCG-AAAG 2496
|||||||||||| ||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 2473 ATCCATCTGGCTCTGCTCGGACTGAGCCTTATAATTGCTTTGGCAGAAGAGGGCGGAAAG 2532
Query 2497 GAACCTGAAGCTCTTGCTGCTGCTTCTTCAAAGCGGTTATTTGTTGAGAATCAGCCATAT 2556
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2533 -AACCTGAAGCTCTTGCTGCTGCTTCTTCAAAGCGGTTATTTGTTGAGAATCAGCCATAT 2591
Query 2557 GTTATTGGTGGTTACTCTAGACTTGAGTTTTCAACGTACAAAAGCATTCACGGATCCAAG 2616
||||||||||||||||||| ||||||||||||||| || || |||||||||||||||||
Sbjct 2592 GTTATTGGTGGTTACTCTAAACTTGAGTTTTCAACTTATGAATGCATTCACGGATCCAAG 2651
Query 2617 GTGTCACAGATGAATACTCCAAGCAACATTCTTTCTATGGCTGAGAAATATAGATACATG 2676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2652 GTGTCACAGATGAATACTCCAAGCAACATTCTTTCTATGGCTGAGAAATATAGATACATG 2711
Query 2677 AGGGAAACATACAGGAAGAGATTAGCATTTGGGAAATCAGGAATTCATGGTTTTGGCATT 2736
| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 2712 AAGGAAACATACAGGAAGAGACTGGCATTTGGGAAATCAGGAATTCATGGTTTTGGCATA 2771
Query 2737 TTTGCAAAGCTTCCTCACAGGGCGGGAGATATGATGATTGAATATACCGGAGAACTTGTT 2796
|| ||||| ||||| |||| ||| |||||||||||||||||||| |||||||||||||||
Sbjct 2772 TTCGCAAAACTTCCGCACAAGGCCGGAGATATGATGATTGAATACACCGGAGAACTTGTT 2831
Query 2797 AGACCGTCAATAGCTGACAAAAGAGAACAACTCATCTACAATTCAATGGTGGGTGCAGGG 2856
|||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 2832 AGACCGTCTATAGCTGACAAAAGAGAACGTCTTATCTACAATTCAATGGTGGGTGCAGGG 2891
Query 2857 ACTTACATGTTTAGAATCGATGATGAGCGAGTCATAGATGCTACAAGGACAGGAAGCATT 2916
||||||||||||||||| |||||| | ||||||||||||||||||||| |||||||||||
Sbjct 2892 ACTTACATGTTTAGAATTGATGATAAACGAGTCATAGATGCTACAAGGGCAGGAAGCATT 2951
Query 2917 GCTCACCTGATTAATCATTCATGTGTGCCCAATTGCTATTCTCGAGTCATCACTGTTAAT 2976
|| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 2952 GCCCACCTGATTAATCATTCCTGTGTGCCCAATTGCTATTCAAGAGTCATCACTGTTAAT 3011
Query 2977 GGAGATGAGCACATTATCATATTCGCAAAGAGGCATATCCCTAAATGGGAAGAGCTGACC 3036
||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 3012 GGAGAGGAGCACATTATCATTTTCGCAAAGAGGGATATCCCTAAATGGGAAGAGCTGACC 3071
Query 3037 TATGACTATAGGTTCTTTTCAATCGGGGAGCGCCTTTCATGTTCGTGTGGCTTCCCAGGG 3096
||||||||||||||||||||||| || ||||||||||||||||| ||||| |||| ||||
Sbjct 3072 TATGACTATAGGTTCTTTTCAATTGGTGAGCGCCTTTCATGTTCATGTGGGTTCCAAGGG 3131
Query 3097 TGTCGAGGTGTTGTTAATGATACAGAAGCTGAAGAACAACA-TGCAAAAATATGTGTTCC 3155
|||||||||||||| |||||||||||||| |||| |||||| | | ||||||||||||||
Sbjct 3132 TGTCGAGGTGTTGTGAATGATACAGAAGCAGAAGCACAACAGT-CGAAAATATGTGTTCC 3190
Query 3156 TCGTTGTGATCTAATAGACTGGACCGCAGAATAAGC-GACTAAAACTGTAG 3205
||||||||| |||||||||||||||| | |||| || |||||||||| |||
Sbjct 3191 TCGTTGTGAACTAATAGACTGGACCGAATAATAGGCTGACTAAAACTATAG 3241
> Ahg311665 jgi|Araly1|311665|fgenesh1_pm.C_scaffold_1000445
Length=3621
Score = 972 bits (526), Expect = 0.0
Identities = 946/1140 (83%), Gaps = 64/1140 (6%)
Strand=Plus/Plus
Query 1182 GCTTCCAGAAAGAAT-GAGTCAACTTCAAAAGGGAGCTGATTCTG-TTGATTCCGATATG 1239
|||||||| ||| || || |||||||||||| | |||||| ||| ||| ||| || | |
Sbjct 1128 GCTTCCAGGAAGGATGGA-TCAACTTCAAAAAGTTGCTGATACTGATTG-TTCGGA-AAG 1184
Query 1240 G-CTAATAGTACAGAAGAGG---G---AAACTCGGGTGGTGATCTTC-TTAATGATGGAG 1291
| |||||||| |||||||| | ||||||||||| |||| | | || |||||||
Sbjct 1185 GACTAATAGTGGAGAAGAGGACAGCTCAAACTCGGGTGATGAT-TACACAAAAGATGGAG 1243
Query 1292 AAGTGTGGTTG-AGACCAACA-GAACATGTAGACTT-CCGGCATATAATAGGGGATCTGC 1348
|||| |||||| | ||||||| ||| || ||| || | ||||| |||||| |||||||
Sbjct 1244 AAGTCTGGTTGCA-ACCAACAGGAA-TTGGAGA-TTGCTTGCATAGAATAGGCGATCTGC 1300
Query 1349 TAATAATAAATCTTGGAAAGG-TTGTGACAGACTCTCAGTTTTTCAAGGATGAG-AATCA 1406
|||||| || ||||| |||| | ||||||||||| | |||||||||||| || || ||
Sbjct 1301 AAATAATGAACCTTGG-AAGGATCGTGACAGACTCAGAATTTTTCAAGGAT-AGTAAGCA 1358
Query 1407 TATTTGGCCTGAAGGGTATACGGCGATGAGAAAGTTCACATCACTCACAGATCATAG-TG 1465
|| |||||||||||||||||| || || ||||| || | |||||| | ||||| | | ||
Sbjct 1359 TACTTGGCCTGAAGGGTATACAGCTATAAGAAAATTTATATCACTAAAAGATCCT-GATG 1417
Query 1466 CATCTGCCTTGTACAAGATGGAAGTGCTCAGAGATGCCGAGACAAAGACTCATCCGCTG- 1524
|||||||| ||||||||||||||||||| |||||||||||| |||| | || || |||
Sbjct 1418 CATCTGCCATGTACAAGATGGAAGTGCTTAGAGATGCCGAGTCAAAAAATC-GCC-CTGT 1475
Query 1525 TTT-ATAGTGAC-TGCAGATAGTGGAGAGCAGTTCAAA-GGGCCTACTCCATCGGCCTGC 1581
||| | ||| || || | || || |||||||||||| ||| | |||||||| ||||||
Sbjct 1476 TTTCAGAGTTACAACCA-ACAGCGGTGAGCAGTTCAAAGGGGAC-ACTCCATCTGCCTGC 1533
Query 1582 TGGAACAAAATATATAATAGGATAAAAAAGGTCCAGA---ATTCTGACAGTCCTAATATT 1638
||||| |||||||||||||||||||||||| | |||| |||||| ||||| || |
Sbjct 1534 TGGAATAAAATATATAATAGGATAAAAAAGATTCAGAGTGCTTCTGATGGTCCTGATGGT 1593
Query 1639 TTGGGTGAAGAACTAAATGGATCTGGTACAGACATGTTTGGTC-TCTCCAACCCAGAAGT 1697
|||||||||| ||| ||| |||||||||||| |||||||| | ||||||||||||||||
Sbjct 1594 TTGGGTGAAGGACTTCATGAATCTGGTACAGATATGTTTGG-CTTCTCCAACCCAGAAGT 1652
Query 1698 C-ATTAAACTTGTACAGGATTTATCAAAATCCAGACCATCGTCCCATGTTTC-CATGTGC 1755
| | ||||||| | |||| ||| | |||| |||||| | ||| | ||||| || | ||
Sbjct 1653 CGA-TAAACTTATTCAGGGGCTATTACAATCTAGACCACCTTCCAAGGTTTCTCA-GCGC 1710
Query 1756 AAAAATAGTTTGGGAAGGCATCAAAATCAGCCTACTGGTTACCGACCTGTCCGTGTTGAC 1815
||| |||||| |||| | ||||| |||| |||||||||||||||||||| || || |||
Sbjct 1711 AAATATAGTTCCGGAAAGTATCAAGATCATCCTACTGGTTACCGACCTGTACGGGTGGAC 1770
Query 1816 TGGAAAGATCTCGATAAGTGCAATGTCTGCCACATGGATGAGGAGTATGAGAACAATTTG 1875
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1771 TGGAAAGATCTTGATAAGTGCAATGTCTGCCACATGGATGAGGAATATGAGAACAATTTG 1830
Query 1876 TTCCTGCAATGTGATAAATGTAGAATGATGGTCCATGCTAAATGCTATGGAG-AGCTAGA 1934
||| |||||||||||||||||||||||||||||||| ||| ||||||||| | |||||||
Sbjct 1831 TTCTTGCAATGTGATAAATGTAGAATGATGGTCCATACTAGATGCTATGG-GCAGCTAGA 1889
Query 1935 ACCCTGTGATGGTGCTT-TGTGGTTATGCAACTTATGTCGTCCTGGTGCTCCTGATATGC 1993
|||| ||||||| || |||||||||||||||||||||||||||| |||| |||||| |
Sbjct 1890 ACCCCGTGATGGCA-TTCTGTGGTTATGCAACTTATGTCGTCCTGGCGCTCTTGATATTC 1948
Query 1994 CTCCACGGTGTTGTCTTTGTCCTGTAG--------TA-------GGGGGTGCTATGAAGC 2038
|||| || |||||||||||||||||| || ||||| ||||||||||
Sbjct 1949 CTCCTCGATGTTGTCTTTGTCCTGTACCAACAAAATATCTTTCAGGGGGCGCTATGAAGC 2008
Query 2039 CGACAACTGATGGTCGCTGGGCTCATCTGGCTTGTGCTATATGGATCCCAGAAACATGTT 2098
||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| || |
Sbjct 2009 CGACAACTGATGGGCGCTGGGCTCATCTGGCGTGTGCCATATGGATCCCAGAAACCTGCT 2068
Query 2099 TATCTG-ATGTCAAGAAGATGGAACCTATTGATGGGGTGAATAAAGTCAGCAAGGATCGT 2157
||| || ||||||||||||||||||| || ||||| || |||||||||| |||||||||
Sbjct 2069 TAT-TGGATGTCAAGAAGATGGAACCGATCGATGGAGTTAATAAAGTCAATAAGGATCGT 2127
Query 2158 TGGAAATTAATGTGCACCATCTGCGGGGTATCTTATGGAGCTTGTATCCAATGTTCAAAC 2217
|||||||| |||||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct 2128 TGGAAATTGTTGTGCAGCATCTGTGGTGTATCTTATGGAGCTTGTATCCAATGTTCAAAT 2187
Query 2218 AATTCTTGTCGCGTGGCATATCATCCACTCTGCGCGCGAGCTGCTGGTCTCTGTGTTGAG 2277
| ||||||||| ||||||||||||||||| || || || |||||||||||||||||||||
Sbjct 2188 AGTTCTTGTCGAGTGGCATATCATCCACTATGTGCACGTGCTGCTGGTCTCTGTGTTGAG 2247
Score = 887 bits (480), Expect = 0.0
Identities = 725/843 (86%), Gaps = 17/843 (2%)
Strand=Plus/Plus
Query 2308 GAAGCAGATCAGTGTATCCGCATGCTTTCATTCTGCAAGCGACATCGACAAACATCAACT 2367
|||||||||||||| |||||| |||||||||| |||||| | |||||||||||||||| |
Sbjct 2344 GAAGCAGATCAGTGCATCCGCCTGCTTTCATTTTGCAAGAGGCATCGACAAACATCAAAT 2403
Query 2368 G-CCTGCCTAGGATCAGAAG-ACAGGATCAAATCCGCTA-CTCATAAAACTT-CTGAGTA 2423
| || | ||| | ||| || ||| ||||||| | | | ||||||| | || | |||||
Sbjct 2404 GACC-ACTTAGAAACAG-AGTACATGATCAAA--C-C-AGCTCATAATA-TTGCCGAGTA 2456
Query 2424 TCTCCCACCACCTAATCCATCTGGCTGTGCTCGGACAGAGCCTTATAATTGTTTTGGCAG 2483
||||||||| ||||||||||||||||||||||| || ||||| ||||||| | |||| ||
Sbjct 2457 TCTCCCACCTCCTAATCCATCTGGCTGTGCTCGCACTGAGCCATATAATTATCTTGGAAG 2516
Query 2484 AAGAGGGCGAAAGGAACCTGAAGCTCTTGCTGCTGCTTCTTCAAAGCGGTTATTTGTTGA 2543
|||||| ||||||||||||||||||||||||| |||||||||||| || |||||||||||
Sbjct 2517 AAGAGGACGAAAGGAACCTGAAGCTCTTGCTGGTGCTTCTTCAAAACGATTATTTGTTGA 2576
Query 2544 GAATCAGCCATATGTTATTGGTGGTTACTCTAGACTTGAGTTTTCAACGTACAAAAGCAT 2603
||||||||| || || ||||||| |||||| ||| ||| |||||||| ||| || ||||
Sbjct 2577 GAATCAGCCGTACATTGTTGGTGGATACTCTCGACATGAATTTTCAACCTACGAACGCAT 2636
Query 2604 TCACGGATCCAAGGTGTCACAGATGAA-TACTCCAAGCAACATTCTTTCTATGGCTGAGA 2662
| | ||||| ||| ||||||| || || |||||||||||| ||||| |||||||||||||
Sbjct 2637 TTATGGATCAAAGATGTCACAAAT-AATTACTCCAAGCAATATTCTATCTATGGCTGAGA 2695
Query 2663 AATATAGATACATGAGGGAAACATACAGGAAGAGATTAGCATTTGGGAAATCAGGAATTC 2722
|||||| || ||||| |||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 2696 AATATACATTCATGAAGGAAACGTACAGGAAGAGATTAGCATTTGGGAAATCGGGAATTC 2755
Query 2723 ATGGTTTTGGCATTTTTGCAAAGCTTCCTCACAGGGCGGGAGATATGATGATTGAATATA 2782
|||||||||| || |||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 2756 ATGGTTTTGGGATCTTTGCAAAGCTTCCGCACAGGGCGGGAGATATGATGATTGAGTACA 2815
Query 2783 CCGGAGAACTTGTTAGACCGTCAATAGCTGACAAAAGAGAACAACTCATCTACAATTCAA 2842
| || ||||||||||| || ||||||||||||| ||||| || || || ||||| ||||
Sbjct 2816 CTGGTGAACTTGTTAGGCCACCAATAGCTGACAAGAGAGAGCATCTTATATACAACTCAA 2875
Query 2843 TGGTGGGTGCAGGGACTTACATGTTTAGAATCGATGATGAGCGAGTCATAGATGCTACAA 2902
|||||||||| ||||| || ||||||||||| ||| |||||||||||||||| || ||||
Sbjct 2876 TGGTGGGTGCTGGGACCTATATGTTTAGAATTGATAATGAGCGAGTCATAGACGCAACAA 2935
Query 2903 GGACAGGAAGCATTGCTCACCTGATTAATCATTCATGTGTGCCCAATTGCTATTCTCGAG 2962
||||||| |||||||| ||||| || ||||| ||||||| ||| ||||||||||| |||
Sbjct 2936 GGACAGGCAGCATTGCCCACCTCATCAATCACTCATGTGAGCCAAATTGCTATTCAAGAG 2995
Query 2963 TCATCACTGTTAATGGAGATGAGCACATTATCATATTCGCAAAGAG-GCATATCCCTAAA 3021
|||| | ||||||||| |||||||| ||||||||||| |||||||| | || | | |||
Sbjct 2996 TCATTAGTGTTAATGGTGATGAGCATATTATCATATTTGCAAAGAGAG-ATGTTGCAAAA 3054
Query 3022 TGGGAAGAGCTGACCTATGACTATAGGTTCTTTTCAATCGGGGAGCGCCTTTCATGTT-C 3080
||||| |||||||||||||||||||||||||||||||| | ||||||||| |||||| |
Sbjct 3055 TGGGAGGAGCTGACCTATGACTATAGGTTCTTTTCAATTGATGAGCGCCTTGCATGTTAC 3114
Query 3081 GTGTGGCTTCCCAGGGTGTCGAGGTGTTGTTAATGATACAGAAGCTGAAGAACAACATGC 3140
||||| |||||| | || || |||||||||||||| |||||||| ||||||||||| ||
Sbjct 3115 -TGTGGTTTCCCAAGATGCCGGGGTGTTGTTAATGACACAGAAGCCGAAGAACAACAGGC 3173
Query 3141 AAA 3143
|||
Sbjct 3174 AAA 3176
Score = 132 bits (71), Expect = 2e-29
Identities = 132/160 (83%), Gaps = 10/160 (6%)
Strand=Plus/Plus
Query 483 TAGTGGGAATAAGCAAAATGGGTCATCCCGAAGGAAG-GG-GTCTTCTAG-CAAGAATCA 539
||| || ||||| ||| |||| || ||||| || ||| || || || | | ||| |||||
Sbjct 507 TAGCGGAAATAAACAAGATGGATCTTCCCGGAGTAAGAGGAGT-TT-T-GTCAAAAATCA 563
Query 540 GGACAAGG-CGACTCTGGCTTCTCG-TTCAGCTAAGAAATGGGTCAGGTTGAGTTATGAT 597
||| |||| | ||| |||||| | | ||||||||||||||||||||||||||||||||
Sbjct 564 GGAGAAGGTTGTCTC-AGCTTCT-GCTACAGCTAAGAAATGGGTCAGGTTGAGTTATGAT 621
Query 598 GGTGTGGATCCTACAAGTTTCATAGGGCTGCAATGCAAGG 637
||||| ||||||| || |||||| ||||||||||||||||
Sbjct 622 GGTGTCGATCCTAAAAATTTCATTGGGCTGCAATGCAAGG 661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127036178674
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5