BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31690.1
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482094 jgi|Araly1|482094|fgenesh2_kg.4__1154__AT2G31690.1 2036 0.0
> Ahg482094 jgi|Araly1|482094|fgenesh2_kg.4__1154__AT2G31690.1
Length=1452
Score = 2036 bits (1102), Expect = 0.0
Identities = 1352/1469 (92%), Gaps = 31/1469 (2%)
Strand=Plus/Plus
Query 1 ATGGC-CTTGATCCAAAACCCTAATATGAAACATGCTCCATTTCTAAGAAACAGATCTCC 59
||||| | ||||||||||||||||||| ||||||| ||||||||||||||||||| ||||
Sbjct 1 ATGGCAC-TGATCCAAAACCCTAATATAAAACATGTTCCATTTCTAAGAAACAGAACTCC 59
Query 60 ACAACAAACACTCTTTATTCCGT-ATACTCTTTCTCTCCCTATTTCTTACCAAAACCCCA 118
| |||||||||||||| |||| | |||||||||||||||||| || | |||||||| |||
Sbjct 60 AGAACAAACACTCTTTCTTCC-TCATACTCTTTCTCTCCCTACTTGTAACCAAAACTCCA 118
Query 119 AAAGACTTAAAACTGCTAAttcttcttcttc---ttcttctctattagcaccagtgattc 175
|||||||| | | |||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 119 AAAGACTTGTGATTACTAATTCTTCTTCTTCTAATTCTTCTCTATTATCACCAGTGATTC 178
Query 176 taaattctccggttgcttcttcttctCCTCCTCCGATATATTGTGCACCAAAGTTTCCTT 235
||| | ||||||||||||||||| ||||||| ||| | ||| ||||||| |||| ||||
Sbjct 179 TAACTGCTCCGGTTGCTTCTTCTCCTCCTCCGCCGGTTTATCGTGCACCGAAGTCCCCTT 238
Query 236 GCTCCAGTGGGGCAGCGACTGTACCCTTATCTCGGGTATGGAGAGAGATACAAGGATGTA 295
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GCTCCTGTGGGGCAGTGACTGTACCCTTATCTCGGGTATGGAGAGAGATACAAGGATGTA 298
Query 296 ACAACTGGAAAGATCTCATCGAACCTTTGAACCCTCTTCTCCAACAAGAGATCACTCGCT 355
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 299 ACAACTGGAAAGATCTCATCGAACCTTTAAACCCTCTTCTCCAACAAGAGATCACTCGCT 358
Query 356 ACGGCAACTTAGTTTCCACTTGTTACAAAGCCTTCGATCTAGACCCTAATTCCAAACGTT 415
| |||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 359 ATGGCAACTTTGTTTCCACTTGTTACAAAGCCTTCGATCTAAACCCTAATTCAAAACGTT 418
Query 416 ACTTGAACTGCAAGTACGGCAAACAAACCCTACTTAAAGAAACCGAAATCGACCAACCTG 475
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ACTTGAACTGCAAGTATGGCAAACAAACCCTACTTAAAGAAACCGAAATCGACCAACCTG 478
Query 476 AGGACTACCAAGTCACAAAATATATCTACGCCACACCGGATATTAACATCAACATCAGTC 535
|||||||||||||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct 479 AGGACTACCAAGTCACCAAATACATCTACGCCACACCGG------ACATCAACATCAGTC 532
Query 536 CTATCCAGAACGAGA-TGAATCGACGAGCGCGTTGGGTAGGTTACGTTGCAGCTTCATCC 594
| ||||||||||||| | ||||||||||| |||||||||||||||||||||| |||||||
Sbjct 533 CGATCCAGAACGAGACT-AATCGACGAGCTCGTTGGGTAGGTTACGTTGCAGTTTCATCC 591
Query 595 GATGACTCGGTGAAACGTTTAGGGAGGAGAGACATTGTGGTGACGTTTCGTGGAACGGTA 654
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 592 GATGACTCGGTGAAACGTATAGGGAGGAGAGACATTGTGGTGACTTTTCGTGGAACGGTA 651
Query 655 ACTAACCCTGAATGGTTGGCAAATTTCATGAGCTCTTTAACTCCTGCTAGGTTCCATCCT 714
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 652 ACTAACCCTGAATGGTTGGCAAATTTCATGAGCTCTTTAACTCCGGCTAGGTTCCATCCT 711
Query 715 CATAACCCGCGTCTCGACGTGAAGGTTGAATCCGGGTTCTTGAGTTTATACACATCAGAT 774
|||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 712 CATAACCCTCGTCTCGACGTGAAGGTCGAATCCGGGTTCTTGAGTTTATATACATCCGAT 771
Query 775 GAGAGTGAGAGCAAATTCGGACTAGAGAGCTGCAGACAACAGCTTCTGTCCGAAATCTCG 834
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 772 GAGAGTGAGAGCAAATTCGGGCTAGAGAGCTGCAGAGAACAGCTTCTGTCCGAAATCTCG 831
Query 835 AGATTGATGAATAAGTATAAAGGAGAAGAGATGAGTATCACACTCGCTGGACATAGCATG 894
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 AGATTGGTGAATAAGTACAAAGGAGAAGAGATGAGTATCACACTCGCTGGACATAGCATG 891
Query 895 GGAAGCTCATTGGCTCAACTTCTTGCTTATGACATTGCGGAACTAGGTTTAAACCGGAGG 954
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 892 GGAAGCTCATTGGCTCAACTTCTTGCTTATGACATTTCGGAACTAGGTTTAAACCAGAGA 951
Query 955 ATTGGCAAGGGAGATATTCCGGTGACCGTGTTCTCTTTCGCAGGACCTAGGGTTGGTAAC 1014
||||| || ||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 952 ATTGGTGAGAGAGATATTCCGGTGACCGTGTTCTCATTCGCAGGTCCTAGGGTTGGTAAC 1011
Query 1015 TTGGAGTTTAAAAAACGTTGCGAAGAGCTAGGTGTTAAGGTCTTGAGGATCACTAACGTC 1074
|||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1012 TTGGAGTTCAAAAAACGTTGCGAGGAGCTAGGTGTTAAGGTTTTGAGGATCACTAACGTC 1071
Query 1075 AATGATCCGGTCACAAAACTTCCAGGTGTTTTATTCAATGAGAATTTTAGGGTTTTAGGT 1134
|||||||||||||| |||||||| |||||||||||||||||||||||||||||| || |
Sbjct 1072 AATGATCCGGTCACTAAACTTCCTGGTGTTTTATTCAATGAGAATTTTAGGGTTCTAC-T 1130
Query 1135 GGTTTTTATGAGCTTCCATGGAGCTGTTCATGTTATGTTCATGTTGGGGTGGAACTCACG 1194
| | |||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1131 G-T----ATGAGCTTCCATGGAGCTGTTCATGTTATGCTCATGTTGGAGTGGAACTCACG 1185
Query 1195 CTAGATTTTTTCGATGTTCAAAACATTTCTTGCGTTCACGATCTCCAAACCTATATCGAT 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 CTAGATTTTTTCGATGTTCAAAACATTTCTTGCGTTCACGATCTCCAAACCTATATCGAT 1245
Query 1255 CTTCTAAACCAACGGAGAACT-AACTCGAGATCAGTCGATTCCGAT---GA--AG-ATGA 1307
|||||||||||||| |||| | ||||| ||||||| |||||||||| || || ||||
Sbjct 1246 CTTCTAAACCAACGCAGAA-TGAACTCAAGATCAGCCGATTCCGATTCCGATGAGGATGA 1304
Query 1308 GGACAGTGACAATGTTGCATTAGAGTTTTTAAAGACAAATGGCGAGAAGATGATGTTCTT 1367
||| ||||||||| |||| ||||||||||| |||| |||||| |||||| | ||||||||
Sbjct 1305 GGAGAGTGACAATTTTGCCTTAGAGTTTTTGAAGAGAAATGGTGAGAAGGTTATGTTCTT 1364
Query 1368 GAAGAGACAACGAATGATGTATTGG-TCCAATGCCGTGGATCTACttttttctttttCTA 1426
|||| |||||||||||||| ||||| | |||| ||||||||||||||||||| | ||||
Sbjct 1365 GAAGGGACAACGAATGATGCATTGGATA-AATGTCGTGGATCTACTTTTTTCTGTATCTA 1423
Query 1427 ACCATATGTCGTATTGTAATATATTTTAG 1455
||||| |||| ||||||||||| ||||||
Sbjct 1424 ACCATGTGTCCTATTGTAATATTTTTTAG 1452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54430960105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5