BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G31710.1

Length=678
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg344930 jgi|Araly1|344930|fgenesh1_pg.C_scaffold_4001272           466    9e-131


> Ahg344930 jgi|Araly1|344930|fgenesh1_pg.C_scaffold_4001272
Length=318

 Score =  466 bits (252),  Expect = 9e-131
 Identities = 297/319 (93%), Gaps = 2/319 (1%)
 Strand=Plus/Plus

Query  97   ATGGCTGGGGTTATGCAGAAGTTCCTTATTGCATCAATGTTTATGTGGATTCTTCCTATT  156
            |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct  1    ATGGCTGGGGTTATGCAGAAATTCCTTATTGCATCAATGTTCATGTGGATTCTTCCTATT  60

Query  157  GCAATATTATATGGATTCAACAATGATTTGCTTCCTGGGTCAACAACGTTGTCTCCACAT  216
            || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct  61   GCGATATTATATGGATTCAACAATGATTTGCTTCCTGGTTCAACAACATTGTCTCCACAT  120

Query  217  TCTCTGACACTACTGAGTGGATTTCTTGCCGTGGTATCAGTCAATGTAGTTATTGTGTTT  276
            |||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct  121  TCTCTGACTCTACTTAGTGGATTTCTTGCGGTGGTATCAGTCAATGTAGTGATTGT-TTT  179

Query  277  -TACATCTGTCTGGCCCTGAAAGAACCTGCGGATAAACACAAGCCAGACGCTTCGTTTGT  335
             ||||||||||||||| |||||||||||| ||||||||||||||||||| |||| |||||
Sbjct  180  CTACATCTGTCTGGCCTTGAAAGAACCTGTGGATAAACACAAGCCAGACCCTTCTTTTGT  239

Query  336  TGCAGAGGCTAAAGACAGTGTTAAGAAATTGACATCAGGAGTCACAAATACTGACCCTGC  395
             |||||||| ||||| ||||| ||||||||||||||||||||||||| ||| ||||||||
Sbjct  240  GGCAGAGGCCAAAGATAGTGTGAAGAAATTGACATCAGGAGTCACAAGTACAGACCCTGC  299

Query  396  GCTGAAGAAACAAGAGTGA  414
            ||| |||||||||||||||
Sbjct  300  GCTCAAGAAACAAGAGTGA  318



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24894264801


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5