BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31720.1
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933719 jgi|Araly1|933719|scaffold_401707.1 510 6e-144
Ahg933736 jgi|Araly1|933736|scaffold_401724.1 438 3e-122
> Ahg933719 jgi|Araly1|933719|scaffold_401707.1
Length=1186
Score = 510 bits (276), Expect = 6e-144
Identities = 494/595 (83%), Gaps = 31/595 (5%)
Strand=Plus/Plus
Query 1 ATGGTGAGAGGAGATGATCAACTTAATG-GTTTGCAGGGAGGGAAGAGAGCGTTAGATAT 59
|||| | |||| ||||||||||| || | |||||||| ||| ||||||| ||| ||||
Sbjct 21 ATGGAGGGAGGTGATGATCAACTCAA-GCGTTTGCAGAGAGAGAAGAGATTATTAAATAT 79
Query 60 TTTATGTG-TAGCGACGGAGAGAACGGTTAGCGCTTTT-GCATATGAGGA-AATAGGAGA 116
||| | || | || |||||||||| |||||| |||||| || |||||||| || |||||
Sbjct 80 TTTGTCTGTTGGC-ACGGAGAGAATGGTTAGAGCTTTTAGC-TATGAGGATAA-CGGAGA 136
Query 117 AACATCCACTGAAGGTGATAAAAGGAGGGAGAGACT-GAGA-AGACTGAGAA--GATTAA 172
|||||||||||||||| || | | | || ||| | | | ||| ||||| || | |
Sbjct 137 AACATCCACTGAAGGTCATGCTA-GTGTGA-AGAATAAAAAGAGAGAGAGAAGCGA-T-A 192
Query 173 TTAATTACAGTCT---GAGCACAACTATGAAT-TCCAGCTTGAGCAAACGACTGAAGATT 228
|||| || |||| ||||||||| | | || ||||| |||||||||||||||||||||
Sbjct 193 TTAACAACGGTCTAAGGAGCACAACGACG-ATCTCCAGATTGAGCAAACGACTGAAGATT 251
Query 229 GATGAGTGCAAGAATCAAGACCCGGAACAAAACCCTAATCGTGTTGCTTCTTCTCCAAGT 288
||||||||| |||||||||||||| ||||||||||||||| | ||||||||||||||||
Sbjct 252 GATGAGTGCGAGAATCAAGACCCGAAACAAAACCCTAATCTTCATGCTTCTTCTCCAAGT 311
Query 289 TCGTGCCATCTAGAGTCCAAGAGGCCTCAAAAAGTGGTTTCAAACAAACCGGTAAGAA-A 347
| ||||||| ||| | |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 312 TTGTGCCATGTAGCGACCAAGAGGCCTCAAAAAGTGGTTTCAAACAAATCGGTAAGACGA 371
Query 348 CAGAAAGCCGGTTA---T-A--GTGACAGATGAAGATAGGACACCGACGGAATGGCTGAT 401
||||||||||||| | | ||||| |||||||||||||| ||| ||||||||||| |
Sbjct 372 -AGAAAGCCGGTTAGAGTTATAGTGACGGATGAAGATAGGACGCCGCCGGAATGGCTGGT 430
Query 402 TGACGTGATGAGAGAAGTGAACGGTATGGATGCAAAGCTGATATTTGTGAAGGTTCTTCC 461
|| ||||||||||| |||| || |||||||||||||||||||||| ||||||||| |
Sbjct 431 CAACATGATGAGAGAAAAGAACAGTGTGGATGCAAAGCTGATATTTGTCAAGGTTCTTAC 490
Query 462 CAATAGTGATGTCGACGAACTTCAGACACGTCT-TATGATGCCCTGGAAGCAGATACTAG 520
|||||||||||| ||| || |||||||||||| | ||||||||||||| |||||||| |
Sbjct 491 CAATAGTGATGTTGACAAAGGTCAGACACGTCTCT-TGATGCCCTGGAACCAGATACTGG 549
Query 521 ATATGGACTTCTTAAACGAGGAAGAGTTAGAAAAAATAGATAGACATCACAAAAA 575
|||||| |||||||||| |||||||||||| || ||||||| |||| |||||||
Sbjct 550 ATATGGGCTTCTTAAACAAGGAAGAGTTAGGAATGATAGATAAACATTACAAAAA 604
Score = 254 bits (137), Expect = 1e-66
Identities = 217/254 (85%), Gaps = 11/254 (4%)
Strand=Plus/Plus
Query 564 ACATCACAAAAAGATTAGTGCCAGTGACAAAGGAGCGGATGTGATCGTGGTGAATTCTAA 623
|||| ||||||||||||||| ||||||||||||||||||||||| |||||| |||| |
Sbjct 626 ACATTACAAAAAGATTAGTGATTGTGACAAAGGAGCGGATGTGATCTTGGTGAGTTCTGA 685
Query 624 GGGTCTACAGAGGAAGCTTAAGCTCAAGAGATGGGATATGACTTCCACTTCCAACTACGT 683
||||| | | | ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 686 GGGTC-A-ACA-GAAGCTTAAGCTCAAGAGATGGGATATGAGTTCCACTTCCAACTACGC 742
Query 684 CTTAGGTTTAGGATGGAACAAGGTCGTCACCGATAACATTCTACAGAGAGGC-ACTAGGC 742
||| |||| ||||||||||||||||||| ||| ||||| |||| ||| |||| | |||
Sbjct 743 CTTGGGTTCAGGATGGAACAAGGTCGTCGCCGGTAACAGTCTAGAGAAAGGCCAG-AGGA 801
Query 743 TTCGGATCTGGTCCTTCCACTCCCCAGACATGCTCTTT-TTCGC-CTTCGTTCTTTCAG- 799
||||| |||||||||||||||||| ||||| ||||| | || || || |||||| | |
Sbjct 802 TTCGGGTCTGGTCCTTCCACTCCCTAGACAAGCTCTATATT-GCTCTA-GTTCTT-CTGG 858
Query 800 ATCCAGATCCAGCT 813
|||||| |||||||
Sbjct 859 ATCCAGCTCCAGCT 872
Score = 148 bits (80), Expect = 5e-35
Identities = 109/123 (89%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 820 GAGTGCCTAAATTTATTGGCTAAATTGTGCGAGGAGACGACTT-GTCTCGAGGCTTTACA 878
||||||||||||||||| ||| || || ||||||||| | || ||||||||||| ||||
Sbjct 1044 GAGTGCCTAAATTTATTTGCTGAAGTGCCCGAGGAGAC-AATTCGTCTCGAGGCTCTACA 1102
Query 879 AGAGGCAAATAGGATGAGCTCACTCGTCTCGGACACAGAGCTGGACCTCGAGCTCCGGTT 938
||||||||||||| ||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1103 GGAGGCAAATAGGAGGAGGTCACTGGTCTCCGACACAGAGCTGGACCTCGAGCTCCGGTT 1162
Query 939 GTA 941
|||
Sbjct 1163 GTA 1165
> Ahg933736 jgi|Araly1|933736|scaffold_401724.1
Length=1179
Score = 438 bits (237), Expect = 3e-122
Identities = 490/605 (81%), Gaps = 45/605 (7%)
Strand=Plus/Plus
Query 1 ATGGTGAGAGGA-GATGATCAACTTAATG-GT-TTGCAGGGAGGGAAGAG-AGCGTTAGA 56
||||||||| | ||||||| ||| || | || ||| || ||| |||||| || ||||||
Sbjct 23 ATGGTGAGA-CATGATGATCTACTCAA-GCGTGTTG-AGAGAGAGAAGAGAAG-GTTAGA 78
Query 57 TATTTTATGTGTAGCGACGGA-GAGAACGG-TTAGCGCTTTTGCATATGAGGAAATAGGA 114
|| | || || || | |||| || || || || | ||||| | ||||||||||||||
Sbjct 79 AATGTCATATGCAGTGGCGGAGGA-AATGGTTTCTC-CTTTTATAAATGAGGAAATAGGA 136
Query 115 GAAACATCCACTGAAGGTGAT--AAAAG--GAGG-GAGAGACTGAGA-AG-ACTGAGAAG 167
||||| |||||||||| |||| | | |||| | | | |||| || || |||||
Sbjct 137 GAAACGTCCACTGAAGATGATGCTAGTGCCGAGGATAAAAAGAGAGAGAGAAC-AAGAAG 195
Query 168 ATTA-ATTAATTACAGTCT---GAGCACAACTATGAATTC-C-AGCTTGAGCAAACGACT 221
| | ||||||||| |||| ||||||||| ||| | || | || | ||||||||||||
Sbjct 196 A-GAGATTAATTACGGTCTAAGGAGCACAACGATG-A-TCACGAGATCGAGCAAACGACT 252
Query 222 GAAGATTGATGAGTGCAAGAATCAAGACCCGGAA-CAAAACCCTAATCGTGTTGCTTCTT 280
|||||||||||||||| |||||||||| || || ||||||||||||| | |||||||
Sbjct 253 GAAGATTGATGAGTGCGAGAATCAAGA-CCAAAAGCAAAACCCTAATCTTCAAGCTTCTT 311
Query 281 CTCCAAGTTCGTGCCATCTAGAGTCCAAGAGGCCTCAAAAAGTGGTTTCAAACAAACCGG 340
||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct 312 CTCCAAGTTTGTGCCATGTAGCGTCCAAGAGGCCTCAAAAAGTGGTTTCAAACAAATCGA 371
Query 341 TAAGAA-ACAGAAAGCCGGTTA---T-A--GTGACAGATGAAGATAGGACACCGACGGAA 393
|||||| | ||||||||||||| | | ||||| |||||||||||||| ||| |||||
Sbjct 372 TAAGAAGA-AGAAAGCCGGTTAGAGTTATAGTGACGGATGAAGATAGGACGCCGCCGGAA 430
Query 394 TGGCTGATTGACGTGATGAGAGAAGTGAACGGTATGGATGCAAAGCTGATATTTGTGAAG 453
|||||| || || ||||||||||| |||| || |||||||||||||||||||||| |||
Sbjct 431 TGGCTGGTTAACATGATGAGAGAAAAGAACAGTGTGGATGCAAAGCTGATATTTGTCAAG 490
Query 454 GTTCTTCCCAATAGTGATGTCGACGAACTTCA-GACACGTCT-TATGATGCCCTGGAAGC 511
|||||| ||||||||||||| ||||| || ||||||||| | ||||||||||||| |
Sbjct 491 GTTCTTACCAATAGTGATGTTGACGATGA-CAAGACACGTCTCT-TGATGCCCTGGAAAC 548
Query 512 AGATACTAGATATGGACTTCTTAAACGAGGAAGAGTTA-GAAAAAATAGATAGACATCAC 570
||||||| ||||||| |||||||||| ||||||||||| ||| | |||||| |||| ||
Sbjct 549 AGATACTGGATATGGGCTTCTTAAACAAGGAAGAGTTAAGAATGA-TAGATAAACATTAC 607
Query 571 AAAAA 575
|||||
Sbjct 608 AAAAA 612
Score = 130 bits (70), Expect = 2e-29
Identities = 103/118 (87%), Gaps = 5/118 (4%)
Strand=Plus/Plus
Query 825 CCTAAATTTATTGGCTAAATTGTGCGAGGAGACGACTT-GTCTCGAGGCTTTACAAGAGG 883
|||||||||||| | | || || ||||||||| | || ||||||||||| |||||||||
Sbjct 1045 CCTAAATTTATTTGTTGAAGTGCCCGAGGAGAC-AATTCGTCTCGAGGCTCTACAAGAGG 1103
Query 884 CAAATAGGATGAGCTCACTCGTCTCGGACACAGAGCTGGACCTCGAGCTCCGGTTGTA 941
||||||||| | | ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1104 CAAATAGGA-G-G-TCACTGGTCTCCGACACAGAGCTGGACCTCGAGCTCCGGTTGTA 1158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34958714889
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5