BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G31720.1 Length=942 Score E Sequences producing significant alignments: (Bits) Value Ahg933719 jgi|Araly1|933719|scaffold_401707.1 510 6e-144 Ahg933736 jgi|Araly1|933736|scaffold_401724.1 438 3e-122 > Ahg933719 jgi|Araly1|933719|scaffold_401707.1 Length=1186 Score = 510 bits (276), Expect = 6e-144 Identities = 494/595 (83%), Gaps = 31/595 (5%) Strand=Plus/Plus Query 1 ATGGTGAGAGGAGATGATCAACTTAATG-GTTTGCAGGGAGGGAAGAGAGCGTTAGATAT 59 |||| | |||| ||||||||||| || | |||||||| ||| ||||||| ||| |||| Sbjct 21 ATGGAGGGAGGTGATGATCAACTCAA-GCGTTTGCAGAGAGAGAAGAGATTATTAAATAT 79 Query 60 TTTATGTG-TAGCGACGGAGAGAACGGTTAGCGCTTTT-GCATATGAGGA-AATAGGAGA 116 ||| | || | || |||||||||| |||||| |||||| || |||||||| || ||||| Sbjct 80 TTTGTCTGTTGGC-ACGGAGAGAATGGTTAGAGCTTTTAGC-TATGAGGATAA-CGGAGA 136 Query 117 AACATCCACTGAAGGTGATAAAAGGAGGGAGAGACT-GAGA-AGACTGAGAA--GATTAA 172 |||||||||||||||| || | | | || ||| | | | ||| ||||| || | | Sbjct 137 AACATCCACTGAAGGTCATGCTA-GTGTGA-AGAATAAAAAGAGAGAGAGAAGCGA-T-A 192 Query 173 TTAATTACAGTCT---GAGCACAACTATGAAT-TCCAGCTTGAGCAAACGACTGAAGATT 228 |||| || |||| ||||||||| | | || ||||| ||||||||||||||||||||| Sbjct 193 TTAACAACGGTCTAAGGAGCACAACGACG-ATCTCCAGATTGAGCAAACGACTGAAGATT 251 Query 229 GATGAGTGCAAGAATCAAGACCCGGAACAAAACCCTAATCGTGTTGCTTCTTCTCCAAGT 288 ||||||||| |||||||||||||| ||||||||||||||| | |||||||||||||||| Sbjct 252 GATGAGTGCGAGAATCAAGACCCGAAACAAAACCCTAATCTTCATGCTTCTTCTCCAAGT 311 Query 289 TCGTGCCATCTAGAGTCCAAGAGGCCTCAAAAAGTGGTTTCAAACAAACCGGTAAGAA-A 347 | ||||||| ||| | |||||||||||||||||||||||||||||||| |||||||| | Sbjct 312 TTGTGCCATGTAGCGACCAAGAGGCCTCAAAAAGTGGTTTCAAACAAATCGGTAAGACGA 371 Query 348 CAGAAAGCCGGTTA---T-A--GTGACAGATGAAGATAGGACACCGACGGAATGGCTGAT 401 ||||||||||||| | | ||||| |||||||||||||| ||| ||||||||||| | Sbjct 372 -AGAAAGCCGGTTAGAGTTATAGTGACGGATGAAGATAGGACGCCGCCGGAATGGCTGGT 430 Query 402 TGACGTGATGAGAGAAGTGAACGGTATGGATGCAAAGCTGATATTTGTGAAGGTTCTTCC 461 || ||||||||||| |||| || |||||||||||||||||||||| ||||||||| | Sbjct 431 CAACATGATGAGAGAAAAGAACAGTGTGGATGCAAAGCTGATATTTGTCAAGGTTCTTAC 490 Query 462 CAATAGTGATGTCGACGAACTTCAGACACGTCT-TATGATGCCCTGGAAGCAGATACTAG 520 |||||||||||| ||| || |||||||||||| | ||||||||||||| |||||||| | Sbjct 491 CAATAGTGATGTTGACAAAGGTCAGACACGTCTCT-TGATGCCCTGGAACCAGATACTGG 549 Query 521 ATATGGACTTCTTAAACGAGGAAGAGTTAGAAAAAATAGATAGACATCACAAAAA 575 |||||| |||||||||| |||||||||||| || ||||||| |||| ||||||| Sbjct 550 ATATGGGCTTCTTAAACAAGGAAGAGTTAGGAATGATAGATAAACATTACAAAAA 604 Score = 254 bits (137), Expect = 1e-66 Identities = 217/254 (85%), Gaps = 11/254 (4%) Strand=Plus/Plus Query 564 ACATCACAAAAAGATTAGTGCCAGTGACAAAGGAGCGGATGTGATCGTGGTGAATTCTAA 623 |||| ||||||||||||||| ||||||||||||||||||||||| |||||| |||| | Sbjct 626 ACATTACAAAAAGATTAGTGATTGTGACAAAGGAGCGGATGTGATCTTGGTGAGTTCTGA 685 Query 624 GGGTCTACAGAGGAAGCTTAAGCTCAAGAGATGGGATATGACTTCCACTTCCAACTACGT 683 ||||| | | | ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 686 GGGTC-A-ACA-GAAGCTTAAGCTCAAGAGATGGGATATGAGTTCCACTTCCAACTACGC 742 Query 684 CTTAGGTTTAGGATGGAACAAGGTCGTCACCGATAACATTCTACAGAGAGGC-ACTAGGC 742 ||| |||| ||||||||||||||||||| ||| ||||| |||| ||| |||| | ||| Sbjct 743 CTTGGGTTCAGGATGGAACAAGGTCGTCGCCGGTAACAGTCTAGAGAAAGGCCAG-AGGA 801 Query 743 TTCGGATCTGGTCCTTCCACTCCCCAGACATGCTCTTT-TTCGC-CTTCGTTCTTTCAG- 799 ||||| |||||||||||||||||| ||||| ||||| | || || || |||||| | | Sbjct 802 TTCGGGTCTGGTCCTTCCACTCCCTAGACAAGCTCTATATT-GCTCTA-GTTCTT-CTGG 858 Query 800 ATCCAGATCCAGCT 813 |||||| ||||||| Sbjct 859 ATCCAGCTCCAGCT 872 Score = 148 bits (80), Expect = 5e-35 Identities = 109/123 (89%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 820 GAGTGCCTAAATTTATTGGCTAAATTGTGCGAGGAGACGACTT-GTCTCGAGGCTTTACA 878 ||||||||||||||||| ||| || || ||||||||| | || ||||||||||| |||| Sbjct 1044 GAGTGCCTAAATTTATTTGCTGAAGTGCCCGAGGAGAC-AATTCGTCTCGAGGCTCTACA 1102 Query 879 AGAGGCAAATAGGATGAGCTCACTCGTCTCGGACACAGAGCTGGACCTCGAGCTCCGGTT 938 ||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||| Sbjct 1103 GGAGGCAAATAGGAGGAGGTCACTGGTCTCCGACACAGAGCTGGACCTCGAGCTCCGGTT 1162 Query 939 GTA 941 ||| Sbjct 1163 GTA 1165 > Ahg933736 jgi|Araly1|933736|scaffold_401724.1 Length=1179 Score = 438 bits (237), Expect = 3e-122 Identities = 490/605 (81%), Gaps = 45/605 (7%) Strand=Plus/Plus Query 1 ATGGTGAGAGGA-GATGATCAACTTAATG-GT-TTGCAGGGAGGGAAGAG-AGCGTTAGA 56 ||||||||| | ||||||| ||| || | || ||| || ||| |||||| || |||||| Sbjct 23 ATGGTGAGA-CATGATGATCTACTCAA-GCGTGTTG-AGAGAGAGAAGAGAAG-GTTAGA 78 Query 57 TATTTTATGTGTAGCGACGGA-GAGAACGG-TTAGCGCTTTTGCATATGAGGAAATAGGA 114 || | || || || | |||| || || || || | ||||| | |||||||||||||| Sbjct 79 AATGTCATATGCAGTGGCGGAGGA-AATGGTTTCTC-CTTTTATAAATGAGGAAATAGGA 136 Query 115 GAAACATCCACTGAAGGTGAT--AAAAG--GAGG-GAGAGACTGAGA-AG-ACTGAGAAG 167 ||||| |||||||||| |||| | | |||| | | | |||| || || ||||| Sbjct 137 GAAACGTCCACTGAAGATGATGCTAGTGCCGAGGATAAAAAGAGAGAGAGAAC-AAGAAG 195 Query 168 ATTA-ATTAATTACAGTCT---GAGCACAACTATGAATTC-C-AGCTTGAGCAAACGACT 221 | | ||||||||| |||| ||||||||| ||| | || | || | |||||||||||| Sbjct 196 A-GAGATTAATTACGGTCTAAGGAGCACAACGATG-A-TCACGAGATCGAGCAAACGACT 252 Query 222 GAAGATTGATGAGTGCAAGAATCAAGACCCGGAA-CAAAACCCTAATCGTGTTGCTTCTT 280 |||||||||||||||| |||||||||| || || ||||||||||||| | ||||||| Sbjct 253 GAAGATTGATGAGTGCGAGAATCAAGA-CCAAAAGCAAAACCCTAATCTTCAAGCTTCTT 311 Query 281 CTCCAAGTTCGTGCCATCTAGAGTCCAAGAGGCCTCAAAAAGTGGTTTCAAACAAACCGG 340 ||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| || Sbjct 312 CTCCAAGTTTGTGCCATGTAGCGTCCAAGAGGCCTCAAAAAGTGGTTTCAAACAAATCGA 371 Query 341 TAAGAA-ACAGAAAGCCGGTTA---T-A--GTGACAGATGAAGATAGGACACCGACGGAA 393 |||||| | ||||||||||||| | | ||||| |||||||||||||| ||| ||||| Sbjct 372 TAAGAAGA-AGAAAGCCGGTTAGAGTTATAGTGACGGATGAAGATAGGACGCCGCCGGAA 430 Query 394 TGGCTGATTGACGTGATGAGAGAAGTGAACGGTATGGATGCAAAGCTGATATTTGTGAAG 453 |||||| || || ||||||||||| |||| || |||||||||||||||||||||| ||| Sbjct 431 TGGCTGGTTAACATGATGAGAGAAAAGAACAGTGTGGATGCAAAGCTGATATTTGTCAAG 490 Query 454 GTTCTTCCCAATAGTGATGTCGACGAACTTCA-GACACGTCT-TATGATGCCCTGGAAGC 511 |||||| ||||||||||||| ||||| || ||||||||| | ||||||||||||| | Sbjct 491 GTTCTTACCAATAGTGATGTTGACGATGA-CAAGACACGTCTCT-TGATGCCCTGGAAAC 548 Query 512 AGATACTAGATATGGACTTCTTAAACGAGGAAGAGTTA-GAAAAAATAGATAGACATCAC 570 ||||||| ||||||| |||||||||| ||||||||||| ||| | |||||| |||| || Sbjct 549 AGATACTGGATATGGGCTTCTTAAACAAGGAAGAGTTAAGAATGA-TAGATAAACATTAC 607 Query 571 AAAAA 575 ||||| Sbjct 608 AAAAA 612 Score = 130 bits (70), Expect = 2e-29 Identities = 103/118 (87%), Gaps = 5/118 (4%) Strand=Plus/Plus Query 825 CCTAAATTTATTGGCTAAATTGTGCGAGGAGACGACTT-GTCTCGAGGCTTTACAAGAGG 883 |||||||||||| | | || || ||||||||| | || ||||||||||| ||||||||| Sbjct 1045 CCTAAATTTATTTGTTGAAGTGCCCGAGGAGAC-AATTCGTCTCGAGGCTCTACAAGAGG 1103 Query 884 CAAATAGGATGAGCTCACTCGTCTCGGACACAGAGCTGGACCTCGAGCTCCGGTTGTA 941 ||||||||| | | ||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 1104 CAAATAGGA-G-G-TCACTGGTCTCCGACACAGAGCTGGACCTCGAGCTCCGGTTGTA 1158 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34958714889 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5