BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31725.1
Length=634
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482095 jgi|Araly1|482095|fgenesh2_kg.4__1155__AT2G31725.1 955 0.0
Ahg470580 jgi|Araly1|470580|fgenesh2_kg.1__534__AT1G05730.1 446 1e-124
Ahg483486 jgi|Araly1|483486|fgenesh2_kg.4__2546__AT2G43720.1 124 6e-28
> Ahg482095 jgi|Araly1|482095|fgenesh2_kg.4__1155__AT2G31725.1
Length=622
Score = 955 bits (517), Expect = 0.0
Identities = 591/626 (94%), Gaps = 7/626 (1%)
Strand=Plus/Plus
Query 1 AGCTAAAACCCTAAAGCCCTAAAATCAAAATTACGCTAAACAGAGAAGGCGACAATGGAT 60
|||||||||||||||||||| |||||||| ||| ||||| ||||||||| ||| ||||||
Sbjct 1 AGCTAAAACCCTAAAGCCCTGAAATCAAAGTTAAGCTAAGCAGAGAAGGAGACGATGGAT 60
Query 61 CACATCGCTGCGGCGGAAGAGCAAATCGTATCGGAGAGACTTCGAAGAAAGCTTGAAGAA 120
||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||
Sbjct 61 CACATCGCTGCGGCGGAGGAGCAAATCGTATCGGAGAGGCTTCGAAGAAAGCTTCAAGAA 120
Query 121 GTTAATGTAGCTGCTCAGACTCAGCTTTCTCCTATCCAAGATCACATCAATTTCACCCTT 180
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTAATGCAGCTGCTCAGACTCAGCTTTCTCCTATCCAAGATCACATCAATTTCACCCTC 180
Query 181 CAGCAAGCTTATTTCAAATGTGCATATGAGTGCTTTGATAGAAGAAGAAAGCAAGAGGAG 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 CAGCAAGCTTATTTCAAATGTGCATATGAGTGCTTTGACAGAAGAAGAAAGCAAGAGGAG 240
Query 241 ATAAGTAACTGCGTCGAGCACTGCAGTGTTCCCGTTGTCAAATCTCAACAGTATTTCGAG 300
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATAAGTAACTGTGTTGAGCACTGCAGTGTTCCCGTTGTCAAATCTCAACAGTATTTCGAG 300
Query 301 AACGAAATGGCTCAATTTCAGGAAAGATTGAACAGATCACTGGTGGTGTGTCAAGACAAG 360
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 AACGAAATGGCTCAGTTTCAGGAAAGATTGAACAGGTCACTGGTGGTGTGTCAAGACAAG 360
Query 361 TTTGAGGCCTCAAAGCTCCAGAAGATAAGGCCTGAAGCGGTTAACGAGATGGAGAGTTGT 420
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 361 TTTGAGGCCTCAAAGCTCCAGAAGATAAGGCCTGAAGCGATTAACGAGATGGAGAGTTGC 420
Query 421 GTGCACAAATCCATTGAGGAAAATCTCAATACATTACCACATATTGTGCAGAGAATGAAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTGCACAAATCCATTGAGGAAAATCTCAATACATTACCACATATTGTGCAGAGAATGAAG 480
Query 481 ACA-GCATTTAACATAACCAACTAAAAGCTCTCGTGAAAAACCTTGGATTCCAGAACTTG 539
|| |||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||
Sbjct 481 -CAAGCATTTAACATAACCAACTAAA-GCTCTCGTGCAAACCCTTGGATTCCGGAACTTG 538
Query 540 ACTAG-CCATATTGTTTGAAAAGACCTTTTCT-TTTGTCTTAATATGATCTACAAATTTG 597
||| | |||| | ||||||||||||||||| | ||||||||||||||||||| |||||||
Sbjct 539 ACTGGGCCAT-T-GTTTGAAAAGACCTTTTGTGTTTGTCTTAATATGATCTATAAATTTG 596
Query 598 TTTTCCTTTTTCTTATATTAAGTTTT 623
|||| ||||| ||||||| ||| |||
Sbjct 597 TTTTACTTTTCCTTATATAAAGGTTT 622
> Ahg470580 jgi|Araly1|470580|fgenesh2_kg.1__534__AT1G05730.1
Length=1001
Score = 446 bits (241), Expect = 1e-124
Identities = 414/494 (84%), Gaps = 25/494 (5%)
Strand=Plus/Plus
Query 3 CTAAAA-CCCTAAAGCCCTAAAATCAAAATTAC-GCTAAACAGAGA---AG-GCGACAAT 56
|||||| ||||||| ||||| |||||||| | | || | | |||| || | ||| ||
Sbjct 463 CTAAAACCCCTAAAACCCTAGAATCAAAA-T-CTGCCATTC-GAGATCGAGAGAGACGAT 519
Query 57 GGATCACATCGCTGCGGCGGAAGAGCAAATCGTATCGGAGA-GACTTCGAAGAAAGCTTG 115
||||||||| || ||||| || |||||||| || |||||| || || ||||||| ||||
Sbjct 520 GGATCACATAGCAGCGGCAGAGGAGCAAATTATAACGGAGAGGA-TTAGAAGAAAACTTG 578
Query 116 AAGAAGTTAATGTAGCTGCTCAGA-CTCAGCTTTCTCCTATCCAAGATCACATCAATTTC 174
|||||||||||| | ||||||| | | || || |||||||| ||||||||||||||||||
Sbjct 579 AAGAAGTTAATGCATCTGCTCA-ATCGCAACTCTCTCCTATTCAAGATCACATCAATTTC 637
Query 175 ACCCTTCAGCAAGCTTATTTCAAATGTGCATATGAGTGCTTTGATAGAAGA-AGAAAGCA 233
|||||||||||||||||||||||||||||||| ||||||||||| |||| | || |||||
Sbjct 638 ACCCTTCAGCAAGCTTATTTCAAATGTGCATACGAGTGCTTTGACAGAA-ATAGGAAGCA 696
Query 234 AGAGGAGATAAGT-AACTGCGTCGAGCACTGCAGTGTTCCCGTTGTCAAAT-CTCAACAG 291
|||||||||| | ||||| || ||||||||||||||||| |||||||| | ||||||||
Sbjct 697 AGAGGAGATA-GCCAACTGTGTTGAGCACTGCAGTGTTCCAGTTGTCAA-TGCTCAACAG 754
Query 292 TATTTCGA-GAACGAAATGGCTCAATTTCAGGAAAG-ATTGAACAGATCACTGGTGGTGT 349
||||||| | |||||||||||| ||||||||||| || ||||||||| || |||| |
Sbjct 755 CATTTCGAAGG-CGAAATGGCTCAGTTTCAGGAAAGGAT-GAACAGATCTCTCATGGTCT 812
Query 350 GTCAAGACAAGTTTGAGGCCTCAAAGCTCCAGAAGATA-AGGCCTGAAGCGGTTAACGAG 408
|||||||||| |||||||| ||||||||||| |||| | ||| ||| || | || |
Sbjct 813 GTCAAGACAAATTTGAGGCGTCAAAGCTCCATAAGA-ACAGGGTTGATGCCGCCAAAGCT 871
Query 409 ATGGAGAGTTGTGTGCACAAATCCATTGAGGAAAATCTCAATACATTACCACATATTGTG 468
||||||||||||||| ||| |||||||||||| | |||| ||||||| || |||||||||
Sbjct 872 ATGGAGAGTTGTGTGAACACATCCATTGAGGATAGTCTCGATACATTGCCTCATATTGTG 931
Query 469 CAGAGAATGAAGAC 482
||||||||||||||
Sbjct 932 CAGAGAATGAAGAC 945
> Ahg483486 jgi|Araly1|483486|fgenesh2_kg.4__2546__AT2G43720.1
Length=497
Score = 124 bits (67), Expect = 6e-28
Identities = 191/249 (77%), Gaps = 16/249 (6%)
Strand=Plus/Plus
Query 145 CTTTCTCCTATCCAAGATCACATCAATTTCACCCTTCAGCAA-GCTTATTTCAAATGTGC 203
|||||||| || ||||| |||||||||||||||||||| || || || |||||||||||
Sbjct 110 CTTTCTCCAATACAAGACCACATCAATTTCACCCTTCA-AAAGGCATACTTCAAATGTGC 168
Query 204 ATATGAGTGCTTTGATAGAAGAAGAA-AGCAAGAGGAGATAAGTA-ACTGCGTC-GAGCA 260
|||||||||||||||||| | ||||| | || | ||||| ||| | || | | ||| |
Sbjct 169 ATATGAGTGCTTTGATAGGACAAGAACA-CACGCTGAGATTAGTCGA-TGTG-CAGAG-A 224
Query 261 CT-GCAGTGTTCCCGTTGTCAAAT-CTCA-ACAGTA-TTTCGAGAACGAAATGGCTCAAT 316
| |||||||||| | ||||| | || | | | ||| || || || ||| || |
Sbjct 225 GTTGCAGTGTTCCTATCA-CAAATTCGCAGA-ACCACTTT-GATAATGAGATGTCTGTGT 281
Query 317 TTCAGGAAAGATTGAACAGATCACTGGTGGTGTGTCAAGACAAGTTTGAGGCCTCAAAGC 376
| || || || ||||| ||||| || ||||| |||||||||||||||||| || | ||||
Sbjct 282 TCCAAGAGAGGTTGAATAGATCTCTTGTGGTTTGTCAAGACAAGTTTGAGTCCGCTAAGC 341
Query 377 TCCAGAAGA 385
| ||||||
Sbjct 342 TTAAGAAGA 350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23216856453
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5