BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31730.1
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482096 jgi|Araly1|482096|fgenesh2_kg.4__1156__AT2G31730.1 1291 0.0
Ahg919275 jgi|Araly1|919275|scaffold_100556.1 351 4e-96
> Ahg482096 jgi|Araly1|482096|fgenesh2_kg.4__1156__AT2G31730.1
Length=907
Score = 1291 bits (699), Expect = 0.0
Identities = 854/925 (92%), Gaps = 26/925 (3%)
Strand=Plus/Plus
Query 1 CTCTTTTCTTTGCTTTCTTCTCTACATAAAACTAAAACTCCTCTCTTTCACGACCCTTTA 60
||||| ||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 1 CTCTTCTCTTTGCTTTCTTCTCTACAT--AA-TAAAACTCCTCTCTCTCACGACCCTTTG 57
Query 61 AGTAACGACGCCGTTTTCATCCAAACACAAACCTCTGGAATCGTGTCACCGTTGGAGCTC 120
||| ||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct 58 AGTTACGACGCCGTTTTCATCCAAACACAAACCTCTGGATTCGTGTCACCGTAGAAGCTC 117
Query 121 CGGCTTC-ATTAATGGCTTTCTTCAAGACCTGAAGACAAAAGAAAGTAAA-AATATATAT 178
|||| || ||||| | |||||||||||| |||||||||||| |||| ||| ||||||||
Sbjct 118 CGGC-TCTATTAAAGTCTTTCTTCAAGAACTGAAGACAAAATAAAG-AAAGAATATATAA 175
Query 179 ACACTAGAGAGACCAAGATCCTCGTTTATGGGTTTCATCGTGTCTTGTGCTTAGGGTGAC 238
|||||||||||||||||||||||||||||||||||||||||| | | || |||||
Sbjct 176 ACACTAGAGAGACCAAGATCCTCGTTTATGGGTTTCATCGTG---T-T--TT---GTGAC 226
Query 239 ATAAATACCCATTTAGAGAGCTTA-GACCAAGAAGTTTT-AGAGTTTGTGAAGTTACTTG 296
||||| ||||||||| | || ||| |||||||||||||| |||||||||||||||| |||
Sbjct 227 ATAAAAACCCATTTA-AAAGATTAGGACCAAGAAGTTTTCAGAGTTTGTGAAGTTA-TTG 284
Query 297 TTGGTTAGTCTGCTGTTTCTGGCAAATGCTGAGTCTCTTCTCTCTGAATGGAATACTCTA 356
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 285 TTGGTTAGTGTGCTGTTTCTGGCAAATGCTGAGTCTCTTTTCTCTGAATGGAATACTCTA 344
Query 357 GAGACTCGGCAGAGATGATGATGGAGACTAAGCGCAATGTCTACTCGCTTGAAGATAACA 416
||||||||||||| ||||||||||||| |||||||||||||||||| |||||||| ||||
Sbjct 345 GAGACTCGGCAGATATGATGATGGAGAATAAGCGCAATGTCTACTCTCTTGAAGAAAACA 404
Query 417 AAATTAAACGACACAAGTCATCTGATCTCTCTTTCTCTTCCAAGGAGAGGAAAGACAAAT 476
| || |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 405 ACATCAAACGACACAAGTCGTCTGATCTCTCTTTCTCTTCCAAGGAGAGGAAGGACAAGT 464
Query 477 TAGCAGAACGTATTTCAGCTCTTCAACAACTAGTTTCCCCTTACGGAAAGACCGACACTG 536
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 TGGGAGAACGTATTTCAGCTCTTCAACAACTAGTTTCCCCTTACGGAAAGACCGACACTG 524
Query 537 CATCAGTTCTTCTAGAGGGAATGCAATACATTCAGTTTCTTCAAGAACAAGTCAAGGTTC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 CATCAGTTCTTCTAGAGGGAATGCAATACATTCAGTTTCTTCAAGAACAAGTCAAGGTTC 584
Query 597 TAAGTGCTCCTTATCTGCAAGCAACCCCTTCTACTACAG-AGGAGGAAGTGGAAGAGTAC 655
|||| ||||| ||||||||||||||||| ||||| | | |||||||| | |||||||||
Sbjct 585 TAAGCGCTCCATATCTGCAAGCAACCCCCACTACTTC-GCAGGAGGAACTCGAAGAGTAC 643
Query 656 AGCTTAAGAAGTAAAGGGCTATGTCTTGTTCCATTGGAGTATACATCAGAAGTTGCTCAA 715
||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 644 AGCCTAAGAAGCAAAGGGCTATGTCTTGTTCCATTGGAGTATACATCAGGAGTTGCTCAA 703
Query 716 ACCAATGGTGCTGATATTTGGGCTCCTGTGAAGACTCCAACATCTTCTCATGCTTTTAAT 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 ACCAATGGTGCTGATATTTGGGCTCCTGTGAAGACTCCAACATCTTCTCATGCTTTTAAT 763
Query 776 CTCTCGTCTTCTAATTCGCCCTTTCAATGAGCTGCTGCTAAATTCTCTGTCTCAAGACTA 835
||||||||||||||||||||||||| |||| | |||||||| |||||||||||||||||
Sbjct 764 CTCTCGTCTTCTAATTCGCCCTTTCGATGAT-TCCTGCTAAAATCTCTGTCTCAAGACTA 822
Query 836 ATGAAAATTAGCCAAAGCTTTGGTCTGATCATGTATTGATG--G-AGAGACCTTGAAGTC 892
||||| |||| ||||| |||||||||||||||||||||||| | |||||||||||||||
Sbjct 823 ATGAAGATTACCCAAAACTTTGGTCTGATCATGTATTGATGATGGAGAGACCTTGAAGTC 882
Query 893 GGTGATGGCTGTTTCTGTTATTTTT 917
|||||||||||||||||||||||||
Sbjct 883 GGTGATGGCTGTTTCTGTTATTTTT 907
> Ahg919275 jgi|Araly1|919275|scaffold_100556.1
Length=490
Score = 351 bits (190), Expect = 4e-96
Identities = 347/420 (83%), Gaps = 22/420 (5%)
Strand=Plus/Plus
Query 342 GAATGGAATACTCTAGAGACTCGGCAGAGATGATGATGGAG-ACTAAGCGCAATGTCTAC 400
||||||||| |||||||||| | | || |||||||||||| || ||||| ||||||| |
Sbjct 19 GAATGGAATTCTCTAGAGACGCTG--GA-ATGATGATGGAGAAC-AAGCGGAATGTCTGC 74
Query 401 TCGCTTGAAGATAA-CAAAATTAAACGACACAAGTCATCTGATCTCTCTTTCTCTTCCAA 459
|| || | ||| || || || ||||| |||||| ||||||||||||||| | ||||
Sbjct 75 TCTCTCGGAGA-AAGCAGTATCAAACGGCACAAG---TCTGATCTCTCTTTCAATACCAA 130
Query 460 GGAGAGGAAAGACAAA-TTAGCAGAACGTATTTCAGCTCTTCAACAACTAGTTTCCCCTT 518
||||||||| |||||| || | ||||||||||||||||||||||||| ||||||||||||
Sbjct 131 GGAGAGGAAGGACAAAGTT-GGAGAACGTATTTCAGCTCTTCAACAAATAGTTTCCCCTT 189
Query 519 ACGGAAAGACCGACACTGCATCAGTTCTTCTAGAGG-GAATGCAATACATTCAGTTTCTT 577
|||||||||||||||||||||||||||||||||| | || |||| ||||| ||||||||
Sbjct 190 ACGGAAAGACCGACACTGCATCAGTTCTTCTAGACGCGA-TGCATTACATAGAGTTTCTT 248
Query 578 CAAGAACAAGTCAAGGTTCTAAGTGCTCCTTATCTGCAAGCAACCCCTTCTACTACAG-A 636
|| |||||||| ||||| ||||||||||| ||||||||| | | ||| | ||| | |
Sbjct 249 CACGAACAAGTGAAGGTGCTAAGTGCTCCATATCTGCAAACGATACCTGATGTTAC-GCA 307
Query 637 GGAGGAAG-TGGAAG-AGTACAGCTTAAGAAGTAAAGGGCTATGTCTTGTTCCATTGGAG 694
|||||| | |||| | |||||||| | |||| | ||| |||||||||||||| |||||
Sbjct 308 GGAGGA-GCTGGA-GCAGTACAGCCTGAGAAACAGAGGATTATGTCTTGTTCCAATGGAG 365
Query 695 TATACA-TCAGAAGTTGCTCAAACCAATGGTGCTGATATTTGGGCTCCTGTGAAGACTCC 753
||||| | || |||||||||| ||| || |||||||| ||||| || |||||||||||
Sbjct 366 AATACAGTTGGA-GTTGCTCAAAGCAACGGAGCTGATATCTGGGCGCCCGTGAAGACTCC 424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37932302415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5