BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G31740.1 Length=2529 Score E Sequences producing significant alignments: (Bits) Value Ahg933722 jgi|Araly1|933722|scaffold_401710.1 3777 0.0 > Ahg933722 jgi|Araly1|933722|scaffold_401710.1 Length=2329 Score = 3777 bits (2045), Expect = 0.0 Identities = 2239/2333 (96%), Gaps = 12/2333 (1%) Strand=Plus/Plus Query 81 GTGT-GTTTCCATAGCAGAGATATGGGGAAGAAGAAAGGAAACAAAGCAGCAGCTTCAAC 139 |||| | ||||||||| |||||||||||||||||||||||| |||||||||||||| | Sbjct 1 GTGTGGATTCCATAGC--AGATATGGGGAAGAAGAAAGGAAATAAAGCAGCAGCTTCTTC 58 Query 140 AGATGATTTTTTACAAACCCTCGAAGATTTCACCAGCAAAGAGAATTGGGACAAATTCTT 199 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 59 AGATGATTTCTTACAAACCCTCGAAGATTTCACCAGCAAAGAGAATTGGGACAAATTCTT 118 Query 200 CACTCTCAGAGGCAACGACGACTCTTTCGAGTGGTATGCTGAGTGGCCTCAGCTCCATGA 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 119 CACTCTCAGAGGCAACGACGACTCTTTCGAGTGGTATGCTGAGTGGCCTCAGCTCCGTGA 178 Query 260 CTCGCTTTTACCTCTCCTCCAAGA---TTCTTCATCTTCTTCTTCTGATTCGCTTCAGAT 316 |||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||| Sbjct 179 CTCGCTTTTACCTCTCCTCCAAGATTCTTCTTCATCTTCATCTTCTGGTTCGCTTCAGAT 238 Query 317 TCTGGTTCCTGGATGTGGAAACTCCCGCCTTACTGAGCATTTGTACGATGCTGGATTCCG 376 ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct 239 TCTGGTTCCTGGATGTGGAAACTCCCGCCTTTCTGAGCATTTGTACGACGCTGGATTCCG 298 Query 377 TGACATCACTAATGTTGACTTCTCCAAAGTTGTTATCTCCGATATGCTTCGTCGGAACAT 436 ||||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||| || Sbjct 299 TGACATCACCAATGTTGATTTCTCCAAGGTTGTGATCTCCGATATGCTTCGTCGGAATAT 358 Query 437 TCGGACTCGGCCTGAACTGCGTTGGCGAGTTATGGATATAACAAAGATGCAGTTGGCTGA 496 | ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 359 TAGGACTCGTCCTGAACTTCGTTGGCGAGTTATGGATATAACAAAGATGCAGTTGGCCGA 418 Query 497 TGAGTCTTTTGATACGGTTCTAGATAAAGGTGCTCTTGATGCTTTGATGGAGCCAGAAGT 556 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 TGAGTCTTTTGATACTGTTCTAGATAAAGGTGCTCTTGATGCTTTGATGGAGCCAGAAGT 478 Query 557 TGGTACCAAGCTGGGAAATCAATACTTATCAGAGGCCAAGCGGGTTTTGAAACCTGGGGG 616 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 TGGTACCAAGCTCGGAAATCAATACTTATCAGAGGCCAAGCGGGTTTTGAAACCTGGGGG 538 Query 617 GAAGTTTATTTGTCTAACGT-TGGCGGAGTCTCATGTCTTAGCATTGCTTTTTTCAAGAT 675 |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 539 GAAGTTTATTTGTCTAAC-TCTGGCGGAGTCTCATGTCTTAGCATTGCTTTTTTCAAGAT 597 Query 676 TTCGTTTTGGTTGGAAGATGAATGTTCATTCAATTGCTCAAAAACGCTCGAAGCTTAAGA 735 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 598 TTCGTTTTGGCTGGAAGATGAATGTTCATTCAATTGCTCAAAAACGCTCGAATCTTAAGA 657 Query 736 CATATATGGTGGTGGCTGAAAAGGAAAATTCCGTTTTGTTGCATGAGATAACCTCTGCTT 795 | | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 658 CGTTTATGGTGGTGGCTGAAAAGGAAAATTCCGTTTTATTGCATGAGATAACCTCTGCTT 717 Query 796 TCGAACTTGTATCTCTTGGCCGCAATGATAGTCAGGGTTCTGGCATGCGTGAAGCCGTCG 855 |||| ||| |||||||||||||||| ||||||||||||||||| |||||||||||| ||| Sbjct 718 TCGATCTTTTATCTCTTGGCCGCAACGATAGTCAGGGTTCTGGAATGCGTGAAGCCCTCG 777 Query 856 AGAGCGAGAACAAAATACGTAGAGACTGCAATAATGGCTCAGACTTATTGTACTCGCATG 915 |||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 778 AGAGTGAGAACCAAATACGTAGAGACTGCAATAATGGCTCAGACTTATTGTACTCTCATG 837 Query 916 AAGATTTGAAACTTGGTATTAAAGGAGATTTGGCAGAGCTTACTGAAGGTCGCCGTATAA 975 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 838 AAGATTTGAAACTTGGTATTAAAGGAGATTTGACAGAGCTTACTGGAGGTCGCCGTATAA 897 Query 976 AATTTACTTTGGGTGGCCAAGGAAGCAATTTCAGTTATAGGGCCGTGCTTCTTGATGCTC 1035 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 AATTTACTTTGGGTGGCCAAGGAAGCAATTTCAGTTATAGGGCCGTGCTTCTTGATGCTC 957 Query 1036 AGAAACAAACTGAGCCATTTGTATATTATTGTGGTGTTTTTCTTGTCCCCAAGACTCGTG 1095 | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | Sbjct 958 AAAAACAAACTGAGCCATTTGTATATCATTGTGGTGTTTTTCTTGTCCCCAAGACTCGGG 1017 Query 1096 CTCATGAGTGGCTGTTCTGTTCAGAAGAAGGACAGTGGCAGGTTGTCGAGAGTTCTCAGG 1155 |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 1018 CTCATGAGTGGCTGTTCTCTTCAGAGGAAGGACAGTGGCAGGTTGTCGAGAGTTCTCAGG 1077 Query 1156 CCGCTCGTCTCATAATGGTTTTTCTCGACAGTAGCCATAGTGGAGCCACCATGGAGGATA 1215 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1078 CCGCTCGTCTCATAATGGTTTTTCTCGACAGTAGCCATAGTGGAGCCACCATGGAGGATA 1137 Query 1216 TCCAGAATGATTTATCTCCAATGGTGACACAACTAGCTCCCAGAAATGATGATGAAG--- 1272 ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 1138 TCCAGAATGATTTATCTCCCATGGTGACACAACTAGCTCCTAGAAATGATGATGAAGAAG 1197 Query 1273 CTCGCATTCCGTATATGATGGCAAGTGATGGGATAAAAAAGCGTGATACTGTCCACGAGG 1332 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1198 CTCGCATCCCGTATATGATGGCAAGTGATGGGATCAAAAAGCGTGATACTGTCCACGAGG 1257 Query 1333 TTACATCTCCTATGACTGGGAAAGTGGTTGTTGAAGATGTGGTTTATGAAAGCGCTCCTA 1392 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1258 TTACATCTTCTTTGACTGGGAAAGTGGTTGTTGAAGATGTGGTTTATGAAAGCGCTCCTA 1317 Query 1393 GTAATTTAGAAGACTTGTCTACTTCTAGTGATTTGGCATTTCGACGACTTGTATTCAAAA 1452 ||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 1318 GTAATCTAGAAGACTTGTCTCCTTCTAGTGATTTGGCATTTCGACGCCTTGTATTCAAAA 1377 Query 1453 GGACTGAGGGTTTGATACAGTCTGAAGCTTTGCTTGTAGAGGATGGTGAGATTCTTGAAC 1512 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1378 GAACTGAGGGTTTGATACAGTCTGAAGCTTTGCTTGTAGAGGATGGTGAGATTCTTGAAC 1437 Query 1513 AGTCTCAgaaagaaaaaactaaaaatgtttcccaatcgaagcgaaagggaaataaaaagc 1572 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1438 AGTCTCAGAAAGAAAAAACTAAAAATGTTTCCCAATCGAAACGAAAGGGAAATAAAAAGC 1497 Query 1573 aaaaCCAAGAACCGAGCAGGCCTCTTATGAGGGTCTCTCATGATTATCTGGCTAGCTCTT 1632 |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1498 AAAATCAAGAACCAAGCAGGCCTCTTATGAGGGTCTCTCATGATTATCTGGCTAGCTCTT 1557 Query 1633 ACCACACTGGAATTATTTCTGGATTCACATTGGTATCTTCCTACTTGAAGAAGGCTGAGT 1692 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1558 ACCACACTGGAATTATTTCTGGATTCACATTGGTATCTTCCTACTTAAAGAAGGCTGAGT 1617 Query 1693 CATGCGGAACGATGGTTAAGACTGTTGTAATTGGTCTTGGAGCAGGATTACTTCCCATGT 1752 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 1618 CATGCGGAACGATGGTTAAGACTGTTGTAATCGGTCTTGGAGCAGGATTGCTTCCCATGT 1677 Query 1753 TCCTCCATGGATGCTTGCCATTTTTCAGTATTGAGGCGGTTGAGCTTGACCCAGTAATGC 1812 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1678 TCCTCCATGGATGCTTGCCATTTTTCAGTATTGAGGCGGTTGAGCTTGACCCAGTAATGC 1737 Query 1813 TTAGTGTTGGCAAGGATTACTTTGGTTTCACACAAAATGATCGCTTGAAGGTGCATATTG 1872 ||| |||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||| Sbjct 1738 TTAATGTTGGCAAGGATTACTTTGGTTTCACACACAATCATCGCTTGAAGGTTCATATTG 1797 Query 1873 CTGATGGGATCAAATTCATTAGAGATATAACAAACTCTGAAGCTTCGTCTGAGGAATCGT 1932 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 1798 CTGATGGGATCAAATTCATTAGAGATATAACAAACCCTGAAGCTTCGTCTGAGGAAACGT 1857 Query 1933 CAAACATTGGCTCAAATGGAGATTCAACCACTCACAATACACAAGGTGGAATTTGTCCTG 1992 |||| ||||||||||||||||||||| |||||||||| |||||||||| |||||||| Sbjct 1858 CAAATGGTGGCTCAAATGGAGATTCAACGGCTCACAATACCCAAGGTGGAACTTGTCCTG 1917 Query 1993 ACATTTTAATTATAGATGTGGATTCAGCAGATTCAAGCGGCGGATTAACCTGCCCTGCAT 2052 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1918 ACATTTTAATTATAGATGTGGATTCAGCAGATTCAAGCGGCGGATTAACCTGCCCTGCAT 1977 Query 2053 CTGATTTTATCGAAGAGACATTTCTTCTTTCGGTTAAGCAAGCTCTCCCTCAGCACGGTC 2112 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1978 CTGATTTTATCGAAGAGACATTTCTTCTTTCGGTTAAGCGCGCTCTCCCTCAGCACGGTC 2037 Query 2113 TTTTCATAGTGAATTTGGTCACGAGATCACAGTCCGTCAAAGATATGGTAGTATCAAGAA 2172 ||||| ||||||| |||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 2038 TTTTCGTAGTGAACTTGGTCTCGAGATCACAATCCGTCAAAGATATGGTAGTATCAAGAA 2097 Query 2173 TGAAAAAGGTTTTCGATCATTTATTTGGCCTGCAACTAGAAGAGGAAGATGACGTAAACG 2232 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 2098 TGAAAAAGGTTTTCGATCACTTATTCGGCCTGCAACTAGAAGAGGAAGATGACGTAAACG 2157 Query 2233 TAGTGCTCTTTGGGCTTTGCTCTGAATCTGTAATCAGCGAGAACGATATTCCAGAATCTG 2292 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2158 TAGTGCTCTTTGGGCTTTGCTCTGAATCTGTAATCAGCGAGATCGATATTCCAGAATCTG 2217 Query 2293 CAGTTATACTGGAGGGATTGCTCAAGTGCCAGAGATTGGAAACGAAGCAAAGCATCATAG 2352 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 2218 CAGTTATACTGGAGGGATTGCTCAAATGCCAGAGATTAGAAACGAAGCAAAGCATCATAG 2277 Query 2353 ACGCTACAAAGAAGCTGAAATGCTGGAAATAAAAACATTCTTTATTATTTCGT 2405 |||||||||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 2278 ACGCTACAAAGAAGTTGAAATGCTGGAAATAAAAACATTCTTTATTATT-CGT 2329 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 95339883235 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5