BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31740.1
Length=2529
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933722 jgi|Araly1|933722|scaffold_401710.1 3777 0.0
> Ahg933722 jgi|Araly1|933722|scaffold_401710.1
Length=2329
Score = 3777 bits (2045), Expect = 0.0
Identities = 2239/2333 (96%), Gaps = 12/2333 (1%)
Strand=Plus/Plus
Query 81 GTGT-GTTTCCATAGCAGAGATATGGGGAAGAAGAAAGGAAACAAAGCAGCAGCTTCAAC 139
|||| | ||||||||| |||||||||||||||||||||||| |||||||||||||| |
Sbjct 1 GTGTGGATTCCATAGC--AGATATGGGGAAGAAGAAAGGAAATAAAGCAGCAGCTTCTTC 58
Query 140 AGATGATTTTTTACAAACCCTCGAAGATTTCACCAGCAAAGAGAATTGGGACAAATTCTT 199
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 AGATGATTTCTTACAAACCCTCGAAGATTTCACCAGCAAAGAGAATTGGGACAAATTCTT 118
Query 200 CACTCTCAGAGGCAACGACGACTCTTTCGAGTGGTATGCTGAGTGGCCTCAGCTCCATGA 259
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 119 CACTCTCAGAGGCAACGACGACTCTTTCGAGTGGTATGCTGAGTGGCCTCAGCTCCGTGA 178
Query 260 CTCGCTTTTACCTCTCCTCCAAGA---TTCTTCATCTTCTTCTTCTGATTCGCTTCAGAT 316
|||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||
Sbjct 179 CTCGCTTTTACCTCTCCTCCAAGATTCTTCTTCATCTTCATCTTCTGGTTCGCTTCAGAT 238
Query 317 TCTGGTTCCTGGATGTGGAAACTCCCGCCTTACTGAGCATTTGTACGATGCTGGATTCCG 376
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 239 TCTGGTTCCTGGATGTGGAAACTCCCGCCTTTCTGAGCATTTGTACGACGCTGGATTCCG 298
Query 377 TGACATCACTAATGTTGACTTCTCCAAAGTTGTTATCTCCGATATGCTTCGTCGGAACAT 436
||||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 299 TGACATCACCAATGTTGATTTCTCCAAGGTTGTGATCTCCGATATGCTTCGTCGGAATAT 358
Query 437 TCGGACTCGGCCTGAACTGCGTTGGCGAGTTATGGATATAACAAAGATGCAGTTGGCTGA 496
| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 359 TAGGACTCGTCCTGAACTTCGTTGGCGAGTTATGGATATAACAAAGATGCAGTTGGCCGA 418
Query 497 TGAGTCTTTTGATACGGTTCTAGATAAAGGTGCTCTTGATGCTTTGATGGAGCCAGAAGT 556
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TGAGTCTTTTGATACTGTTCTAGATAAAGGTGCTCTTGATGCTTTGATGGAGCCAGAAGT 478
Query 557 TGGTACCAAGCTGGGAAATCAATACTTATCAGAGGCCAAGCGGGTTTTGAAACCTGGGGG 616
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGGTACCAAGCTCGGAAATCAATACTTATCAGAGGCCAAGCGGGTTTTGAAACCTGGGGG 538
Query 617 GAAGTTTATTTGTCTAACGT-TGGCGGAGTCTCATGTCTTAGCATTGCTTTTTTCAAGAT 675
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 539 GAAGTTTATTTGTCTAAC-TCTGGCGGAGTCTCATGTCTTAGCATTGCTTTTTTCAAGAT 597
Query 676 TTCGTTTTGGTTGGAAGATGAATGTTCATTCAATTGCTCAAAAACGCTCGAAGCTTAAGA 735
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 598 TTCGTTTTGGCTGGAAGATGAATGTTCATTCAATTGCTCAAAAACGCTCGAATCTTAAGA 657
Query 736 CATATATGGTGGTGGCTGAAAAGGAAAATTCCGTTTTGTTGCATGAGATAACCTCTGCTT 795
| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 658 CGTTTATGGTGGTGGCTGAAAAGGAAAATTCCGTTTTATTGCATGAGATAACCTCTGCTT 717
Query 796 TCGAACTTGTATCTCTTGGCCGCAATGATAGTCAGGGTTCTGGCATGCGTGAAGCCGTCG 855
|||| ||| |||||||||||||||| ||||||||||||||||| |||||||||||| |||
Sbjct 718 TCGATCTTTTATCTCTTGGCCGCAACGATAGTCAGGGTTCTGGAATGCGTGAAGCCCTCG 777
Query 856 AGAGCGAGAACAAAATACGTAGAGACTGCAATAATGGCTCAGACTTATTGTACTCGCATG 915
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 778 AGAGTGAGAACCAAATACGTAGAGACTGCAATAATGGCTCAGACTTATTGTACTCTCATG 837
Query 916 AAGATTTGAAACTTGGTATTAAAGGAGATTTGGCAGAGCTTACTGAAGGTCGCCGTATAA 975
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 838 AAGATTTGAAACTTGGTATTAAAGGAGATTTGACAGAGCTTACTGGAGGTCGCCGTATAA 897
Query 976 AATTTACTTTGGGTGGCCAAGGAAGCAATTTCAGTTATAGGGCCGTGCTTCTTGATGCTC 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AATTTACTTTGGGTGGCCAAGGAAGCAATTTCAGTTATAGGGCCGTGCTTCTTGATGCTC 957
Query 1036 AGAAACAAACTGAGCCATTTGTATATTATTGTGGTGTTTTTCTTGTCCCCAAGACTCGTG 1095
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 958 AAAAACAAACTGAGCCATTTGTATATCATTGTGGTGTTTTTCTTGTCCCCAAGACTCGGG 1017
Query 1096 CTCATGAGTGGCTGTTCTGTTCAGAAGAAGGACAGTGGCAGGTTGTCGAGAGTTCTCAGG 1155
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1018 CTCATGAGTGGCTGTTCTCTTCAGAGGAAGGACAGTGGCAGGTTGTCGAGAGTTCTCAGG 1077
Query 1156 CCGCTCGTCTCATAATGGTTTTTCTCGACAGTAGCCATAGTGGAGCCACCATGGAGGATA 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CCGCTCGTCTCATAATGGTTTTTCTCGACAGTAGCCATAGTGGAGCCACCATGGAGGATA 1137
Query 1216 TCCAGAATGATTTATCTCCAATGGTGACACAACTAGCTCCCAGAAATGATGATGAAG--- 1272
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1138 TCCAGAATGATTTATCTCCCATGGTGACACAACTAGCTCCTAGAAATGATGATGAAGAAG 1197
Query 1273 CTCGCATTCCGTATATGATGGCAAGTGATGGGATAAAAAAGCGTGATACTGTCCACGAGG 1332
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1198 CTCGCATCCCGTATATGATGGCAAGTGATGGGATCAAAAAGCGTGATACTGTCCACGAGG 1257
Query 1333 TTACATCTCCTATGACTGGGAAAGTGGTTGTTGAAGATGTGGTTTATGAAAGCGCTCCTA 1392
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TTACATCTTCTTTGACTGGGAAAGTGGTTGTTGAAGATGTGGTTTATGAAAGCGCTCCTA 1317
Query 1393 GTAATTTAGAAGACTTGTCTACTTCTAGTGATTTGGCATTTCGACGACTTGTATTCAAAA 1452
||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 1318 GTAATCTAGAAGACTTGTCTCCTTCTAGTGATTTGGCATTTCGACGCCTTGTATTCAAAA 1377
Query 1453 GGACTGAGGGTTTGATACAGTCTGAAGCTTTGCTTGTAGAGGATGGTGAGATTCTTGAAC 1512
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GAACTGAGGGTTTGATACAGTCTGAAGCTTTGCTTGTAGAGGATGGTGAGATTCTTGAAC 1437
Query 1513 AGTCTCAgaaagaaaaaactaaaaatgtttcccaatcgaagcgaaagggaaataaaaagc 1572
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1438 AGTCTCAGAAAGAAAAAACTAAAAATGTTTCCCAATCGAAACGAAAGGGAAATAAAAAGC 1497
Query 1573 aaaaCCAAGAACCGAGCAGGCCTCTTATGAGGGTCTCTCATGATTATCTGGCTAGCTCTT 1632
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 AAAATCAAGAACCAAGCAGGCCTCTTATGAGGGTCTCTCATGATTATCTGGCTAGCTCTT 1557
Query 1633 ACCACACTGGAATTATTTCTGGATTCACATTGGTATCTTCCTACTTGAAGAAGGCTGAGT 1692
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1558 ACCACACTGGAATTATTTCTGGATTCACATTGGTATCTTCCTACTTAAAGAAGGCTGAGT 1617
Query 1693 CATGCGGAACGATGGTTAAGACTGTTGTAATTGGTCTTGGAGCAGGATTACTTCCCATGT 1752
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1618 CATGCGGAACGATGGTTAAGACTGTTGTAATCGGTCTTGGAGCAGGATTGCTTCCCATGT 1677
Query 1753 TCCTCCATGGATGCTTGCCATTTTTCAGTATTGAGGCGGTTGAGCTTGACCCAGTAATGC 1812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 TCCTCCATGGATGCTTGCCATTTTTCAGTATTGAGGCGGTTGAGCTTGACCCAGTAATGC 1737
Query 1813 TTAGTGTTGGCAAGGATTACTTTGGTTTCACACAAAATGATCGCTTGAAGGTGCATATTG 1872
||| |||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||
Sbjct 1738 TTAATGTTGGCAAGGATTACTTTGGTTTCACACACAATCATCGCTTGAAGGTTCATATTG 1797
Query 1873 CTGATGGGATCAAATTCATTAGAGATATAACAAACTCTGAAGCTTCGTCTGAGGAATCGT 1932
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1798 CTGATGGGATCAAATTCATTAGAGATATAACAAACCCTGAAGCTTCGTCTGAGGAAACGT 1857
Query 1933 CAAACATTGGCTCAAATGGAGATTCAACCACTCACAATACACAAGGTGGAATTTGTCCTG 1992
|||| ||||||||||||||||||||| |||||||||| |||||||||| ||||||||
Sbjct 1858 CAAATGGTGGCTCAAATGGAGATTCAACGGCTCACAATACCCAAGGTGGAACTTGTCCTG 1917
Query 1993 ACATTTTAATTATAGATGTGGATTCAGCAGATTCAAGCGGCGGATTAACCTGCCCTGCAT 2052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 ACATTTTAATTATAGATGTGGATTCAGCAGATTCAAGCGGCGGATTAACCTGCCCTGCAT 1977
Query 2053 CTGATTTTATCGAAGAGACATTTCTTCTTTCGGTTAAGCAAGCTCTCCCTCAGCACGGTC 2112
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1978 CTGATTTTATCGAAGAGACATTTCTTCTTTCGGTTAAGCGCGCTCTCCCTCAGCACGGTC 2037
Query 2113 TTTTCATAGTGAATTTGGTCACGAGATCACAGTCCGTCAAAGATATGGTAGTATCAAGAA 2172
||||| ||||||| |||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 2038 TTTTCGTAGTGAACTTGGTCTCGAGATCACAATCCGTCAAAGATATGGTAGTATCAAGAA 2097
Query 2173 TGAAAAAGGTTTTCGATCATTTATTTGGCCTGCAACTAGAAGAGGAAGATGACGTAAACG 2232
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 2098 TGAAAAAGGTTTTCGATCACTTATTCGGCCTGCAACTAGAAGAGGAAGATGACGTAAACG 2157
Query 2233 TAGTGCTCTTTGGGCTTTGCTCTGAATCTGTAATCAGCGAGAACGATATTCCAGAATCTG 2292
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2158 TAGTGCTCTTTGGGCTTTGCTCTGAATCTGTAATCAGCGAGATCGATATTCCAGAATCTG 2217
Query 2293 CAGTTATACTGGAGGGATTGCTCAAGTGCCAGAGATTGGAAACGAAGCAAAGCATCATAG 2352
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 2218 CAGTTATACTGGAGGGATTGCTCAAATGCCAGAGATTAGAAACGAAGCAAAGCATCATAG 2277
Query 2353 ACGCTACAAAGAAGCTGAAATGCTGGAAATAAAAACATTCTTTATTATTTCGT 2405
|||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 2278 ACGCTACAAAGAAGTTGAAATGCTGGAAATAAAAACATTCTTTATTATT-CGT 2329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95339883235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5