BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31750.1
Length=1603
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482098 jgi|Araly1|482098|fgenesh2_kg.4__1158__AT2G31750.1 2241 0.0
Ahg470572 jgi|Araly1|470572|fgenesh2_kg.1__526__AT1G05680.1 318 7e-86
> Ahg482098 jgi|Araly1|482098|fgenesh2_kg.4__1158__AT2G31750.1
Length=1500
Score = 2241 bits (1213), Expect = 0.0
Identities = 1379/1460 (94%), Gaps = 7/1460 (0%)
Strand=Plus/Plus
Query 41 TTGTATGTAACAAATTTCAACAAAAAGAAGAGAAAAACAATGGGAGAGAAAGCGAAAGCA 100
||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||| ||||
Sbjct 1 TTGTATGAAACAAATTTCAACAAAAAGAAAAGAAAAA-AATGGGAGAGAAAGCGAGAGCA 59
Query 101 AATGTGTTAGTCTTCTCATTTCCGATACAAGGTCACATAAACCCTCTCCTCCAATTCTCA 160
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 60 AATGTGTTAGTCTTCTCATTTCCGATACAAGGACACATAAACCCTCTCCTCCAATTCTCA 119
Query 161 AAACGCCTACTCTCTAAAAACGTCAACGTCACATTCCTCACCACTTCCTCCACCCACAAC 220
||||| |||||||| |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 120 AAACGTCTACTCTCCAAAAACGTTACCGTCACATTCCTCACCACTTCCTCCACCCACAAC 179
Query 221 TCCATCCTCCGCCGTGCCATCACCGGCGGAGCCACTGCTCTTCCTCTCTCTTTTGTCCCC 280
||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||
Sbjct 180 TCCATCCTCCGCCGTGCCATCGCCGGCGGAGCCACCGCTCTTCCGCTCTCTTTTGTCCCC 239
Query 281 ATTGACGATGGATTCGAGGAAGATCACCCATCTACGGACACATCTCCCGACTACTTCGCA 340
|| |||||||| |||||||||| ||||||||| || || ||||| || |||||||||||
Sbjct 240 ATAGACGATGGCTTCGAGGAAGGTCACCCATCCACCGATACATCACCGGACTACTTCGCC 299
Query 341 AAGTTCCAAGAAAACGTATCTCGAAGCCTCTCAGAGCTTATCTCCTCGATGGACCCAAAA 400
||||||||||||||||| |||||||||||||| || |||||||| |||||||| ||||||
Sbjct 300 AAGTTCCAAGAAAACGTCTCTCGAAGCCTCTCCGAACTTATCTCGTCGATGGAACCAAAA 359
Query 401 CCAAACGCCGTCGTTTACGACTCGTGCCTGCCTTATGTCCTCGACGTTTGCCGGAAACAT 460
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 360 CCAAACGCCGTCGTTTACGACTCGTGCCTGCCTTATGTTCTCGACGTTTGCCGGAAACAT 419
Query 461 CCTGGCGTTGCTGCGGCGTCGTTTTTCACTCAGTCCTCCACCGTGAACGCGACCTATATT 520
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 420 CCTGGCGTTGCTGCGGCGTCGTTTTTCACTCAGTCCTCCACCGTGAACGCAATCTATATT 479
Query 521 CATTTCTTGCGTGGAGAGTTTAAGGAGTTTCAAAATGATGTCGTTTTGCCTGCAATGCCT 580
|||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 480 CATTTCTTGCGTGGAGCGTTTAAGGAGTTTCAAAACGATGTCGTTTTGCCTGCGATGCCT 539
Query 581 CCGCTGAAGGGTAATGACTTACCGGTGTTTCTGTACGATAACAATCTCTGCCGGCCGTTG 640
|| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 540 CCATTGAAGGGTCATGACTTGCCGGTGTTTCTGTACGATAACAATCTCTGCCGGCCGTTG 599
Query 641 TTTGAGCTCATTAGTAGCCAGTTCGTGAATGTTGACGACATTGACTTCTTCTTGGTTAAC 700
|||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 600 TTTGAGCTGATTAGTAGCCAGTTCGTGAATGTCGATGACATTGACTTCTTCTTGGTTAAC 659
Query 701 TCTTTCGACGAACTCGAAGTCGAGGTGCTACAATGGATGAAAAACCAATGGCCGGTCAAG 760
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 660 TCTTTCGACGAACTCGAAGTCGAGGTGCTAAAATGGATGAAGAACCAATGGCCGGTCAAG 719
Query 761 AACATAGGACCGATGATTCCATCAATGTACTTAGACAAAC-GATTAGCAGGTGACAAAGA 819
|||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| ||
Sbjct 720 AACATAGGACCGATGATTCCATCAATGTACTTAGACAAACGGA-TAGCAGGCGACAAGGA 778
Query 820 CTACGGAATCAACCTCTTCAATGCCCAAGTCAACGAATGCCTTGATTGGCTTGACTCAAA 879
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 779 CTACGGAATCAACCTCTTCAATGCCCAAGTTAACGAATGCCTTGATTGGCTTGACTCAAA 838
Query 880 ACCGCCCGGTTCAGTGATCTACGTGTCTTTTGGAAGCTTGGCCGTCTTAAAAGACGATCA 939
|||||| | |||||||||||||||||||||||| ||||| || |||||||| ||||||||
Sbjct 839 ACCGCCAGTTTCAGTGATCTACGTGTCTTTTGGTAGCTTAGCTGTCTTAAAGGACGATCA 898
Query 940 AATGATAGAAGTCGCGGCTGGTCTAAAACAAACTGGCCATAACTTCTTATGGGTTGTTAG 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 899 AATGATAGAAGTCGCGGCTGGTCTAAAACAAACTGGCCATAACTTCTTATGGGTTGTCAG 958
Query 1000 AGAAACTGAAACAAAGAAGCTTCCAAGCAATTACATAGAGGACATTTGTGACAAGGGATT 1059
|||||| |||||||||||||| |||||||||||||||||||| ||| |||| ||||||||
Sbjct 959 AGAAACCGAAACAAAGAAGCTCCCAAGCAATTACATAGAGGAAATTGGTGAAAAGGGATT 1018
Query 1060 GATAGTGAATTGGAGTCCTCAATTACAAGTTCTTGCACATAAATCAATCGGTTGTTTCAT 1119
|||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1019 GATAGTTAACTGGAGTCCTCAATTACAAGTTCTTGCACATAAATCAGTCGGTTGTTTCAT 1078
Query 1120 GACTCATTGCGGGTGGAATTCGACTTTAGAGGCATTGAGCTTAGGAGTTGCTTTGATAGG 1179
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1079 GACTCATTGCGGGTGGAATTCGACTTTAGAGGCATTGAGCTTAGGAGTGGCTTTGATTGG 1138
Query 1180 AATGCCGGCTTATAGCGACCAGCCGACTAATGCTAAGTTTATTGAAGATGTGTGGAAGGT 1239
|||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 1139 AATGCCGGCTTATAGCGAACAACCGACTAATGCTAAGTTTATAGAAGATGTGTGGAAGGT 1198
Query 1240 TGGGGTTAGGGTTAAGGCAGATCAAAATGGGTTTGTTCCGAAGGAAGAGATTGTGAGATG 1299
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1199 TGGGGTTAGGGTTAAGGCAGATCATAATGGGTTTGTGACGAAGGAAGAGATTGTGAGATG 1258
Query 1300 TGTTGGAGAAGTTATGGAAGATATGTCGGAGAAAGGGAAGGAGATTAGAAAAAATGCTCG 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TGTTGGAGAAGTTATGGAAGATATGTCGGAGAAAGGGAAGGAGATTAGAAAAAATGCTCG 1318
Query 1360 GAGGTTGATGGAGTTTGCAAGGGAAGCTTTGTCTGATGGAGGAAATTCTGATAAGAATAT 1419
||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1319 GAGATTGATGGAGTTTGCAAGAGAAGCTTTGTCTGAAGGAGGAAATTCTGATAAGAATAT 1378
Query 1420 TGATGAGTTTGTTGCTAAAATTGTGAGGTAAAGTGACTG-TATGATTAAT-CTTTGATGC 1477
||||||||||||||||||||||||||||||| ||| || |||||| ||| || ||||||
Sbjct 1379 AGATGAGTTTGTTGCTAAAATTGTGAGGTAAATTGA-TGGTATGATCAATTCTGTGATGC 1437
Query 1478 TTAATTAATAATGTGTTTTT 1497
||||||||||||||||||
Sbjct 1438 C-AATTAATAATGTGTTTTT 1456
> Ahg470572 jgi|Araly1|470572|fgenesh2_kg.1__526__AT1G05680.1
Length=1503
Score = 318 bits (172), Expect = 7e-86
Identities = 535/706 (76%), Gaps = 42/706 (6%)
Strand=Plus/Plus
Query 749 TGGCCGGTCAAGAACATAGGACCGATGATTCCATCAATGTACTTAGACAAACGATTAG-C 807
||||| ||| |||||||||||| | | ||||||| ||||| |||||||||||| | | |
Sbjct 723 TGGCCTGTCTTGAACATAGGACCAACGGTTCCATCGATGTATTTAGACAAACGACT-GTC 781
Query 808 AGGTGACAAAG-ACTACGGAATCAACCTCTTCAATGCCCAAGTCAACGAATGCCTTGATT 866
| ||| ||| ||||||| | | |||||||||||| |||| |||||| | || |
Sbjct 782 TGAAGAC-AAGAACTACGGTTTTAGCCTCTTCAATGCGAAAGTTGTTGAATGCATGGAGT 840
Query 867 GGCTTGACTCAAAACCGCCCGGTTCAG-TGATCTACGTGTCTTTTGGAAGCTTGGCCG-- 923
|||| ||||||| | ||| ||| | || |||| || || || ||||| |||| |
Sbjct 841 GGCTAAACTCAAAGCAGCCTAATTCTGTTG-TCTATGTATCATTCGGAAGTTTGG-TGAT 898
Query 924 TCTTAAAAGACGATCAAATGATAGAAGTCGCGGCTGGTCTAAAACA-AACTGGCCATAAC 982
|| ||||||| ||||||||| | ||| | || || ||||| ||||| | | || | |
Sbjct 899 TC-TAAAAGAAGATCAAATGTTGGAACTTGCTGCGGGTCTGAAACAGAGC-GGATGTTTC 956
Query 983 TTCTTATGGGTTGTTAGAGAAACTGAAACAAAGAAGCTTCCAAGCAATTACATAGAGGAC 1042
|| || |||||||| ||||| || || ||| | || ||||||| || || |||||||
Sbjct 957 TTTTTGTGGGTTGTAAGAGAGACAGAGACAGACAAAATTCCAAGAAACTATGTAGAGGAA 1016
Query 1043 ATTTGTGACAAGGGATTGATAGTGAA-TTGGAGTCCTCA-ATTACAAGTTCTTGCACATA 1100
|| |||| || ||| | || || || ||||||||||| || | || ||||||||||
Sbjct 1017 ATCGGTGAGAAAGGACTAATTGT-AAGCTGGAGTCCTCAGCTT-GACGTACTTGCACATA 1074
Query 1101 AATCAATCGGTTGTTTCATGACTCATTGCGGGTGGAATTCGACT-TTAG-AGGCATTGAG 1158
||||||||||||||||| | || ||||| || ||||| |||| | |||| ||| ||||||
Sbjct 1075 AATCAATCGGTTGTTTCTTAACCCATTGTGGATGGAACTCGA-TGTTAGAAGG-ATTGAG 1132
Query 1159 CTTAGGAGTTGCTTTGATAGGAATGCCGGCTTA-TAG-C-GACCAGCCGACTAATGCTAA 1215
|| |||||| | |||| || ||||| | | | | | || ||||| || ||||||||
Sbjct 1133 TTTGGGAGTTCCAATGATTGGTATGCC-AC--ACTGGACTGATCAGCCCACAAATGCTAA 1189
Query 1216 GTTTATTGAAGATGTGTGGAAGGTTGGGGTTAGGGTTAAGGCAGATCAAAATGGGTTTGT 1275
||| || || ||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1190 GTTCATGGAGGATGTGTGGAAGGTTGGGGTTAGGGTTAAGGCAGAAGATGATGGGTTTGT 1249
Query 1276 TCCGAAG-GAAGAGATTGTGAGATGTGTTGGAGAAGTTATGGAAGATATGTCGGAGAAAG 1334
|||| ||||||||||||||| |||| |||||||||||||| | | | ||||||
Sbjct 1250 GA-GAAGAGAAGAGATTGTGAGAAGTGTGGGAGAAGTTATGGAGGG-A-G----AGAAAG 1302
Query 1335 GGAAGGAGATTAGAAAAAATGCTCG-GAGGTTGATGGAGTTTGC--AAG-GGAAGCTTTG 1390
|||| ||||||||||| |||||| | || || || | ||| || ||| || || |||
Sbjct 1303 GGAAAGAGATTAGAAAGAATGCT-GAGAAGTGGAAAGTGTTGGCTCAAGAGGCAG-TTT- 1359
Query 1391 TCTGATGGAGGAAATTCTGATAAGAATATTGATGAGTTTGTTGCTA 1436
|||| ||||| | |||||||||| || ||||||||||| |||
Sbjct 1360 -CTGAAGGAGGTAGCTCTGATAAGAGCATCAATGAGTTTGTTTCTA 1404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60068316365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5