BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31760.1
Length=1545
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320921 jgi|Araly1|320921|fgenesh1_pm.C_scaffold_4000978 1635 0.0
Ahg933725 jgi|Araly1|933725|scaffold_401713.1 743 0.0
Ahg932865 jgi|Araly1|932865|scaffold_400853.1 283 2e-75
> Ahg320921 jgi|Araly1|320921|fgenesh1_pm.C_scaffold_4000978
Length=1587
Score = 1635 bits (885), Expect = 0.0
Identities = 1384/1611 (86%), Gaps = 90/1611 (6%)
Strand=Plus/Plus
Query 1 ATGGATTATTCAGATGATGACATGATCGATAACGAATCAGGGGAGGA-GA--AT-A--AC 54
||||||||||||||||||||||| ||||||| |||||||||||||| || || | ||
Sbjct 1 ATGGATTATTCAGATGATGACATCATCGATATGGAATCAGGGGAGGAGGAGGATCATTAC 60
Query 55 AGCGATGGTGGTGGTAATG-A-AT-CCTA-CAACTACAACGC-TGCGGTAGACACAATTA 109
||||| ||||||||| | | || || | | ||||| | | || | |||| ||||||
Sbjct 61 AGCGA---TGGTGGTAACGAATATGCCGATC-ACTAC-CCTCTTGAAGAAGACGCAATTA 115
Query 110 TTCTATCTGAGAAAAGTTACGTGA-TTATCAAGGAAGAAGAGATTCTGAAGCTTCAAAGA 168
||| |||||||||||||||||| | || ||||||||||||| |||| |||| |||||||
Sbjct 116 TTCCATCTGAGAAAAGTTACGT-AGTTCTCAAGGAAGAAGACATTCACAAGCATCAAAGA 174
Query 169 GACGACATCGAACGAGTTTCCACGATTCTCTTTCTAAGCCAAGTGGAAGCGATTGTTCTG 228
||||| |||||||||||||||||| ||||| |||||||||||| ||||||| |||||
Sbjct 175 GACGATATCGAACGAGTTTCCACGGCTCTCTCTCTAAGCCAAGTCGAAGCGACCGTTCTT 234
Query 229 CTTCTTCACTATCATTGGTGTGTTAGTAA-ACTCGAAGATGAATGGTTTACGGACGAAGA 287
|||||||| ||||||||| |||||||||| | || | || ||||||||||||||||||||
Sbjct 235 CTTCTTCATTATCATTGGAGTGTTAGTAAGA-TCTACGAGGAATGGTTTACGGACGAAGA 293
Query 288 GAGAATCCGTAAAACCGTTGGTATATTAAAGGAGCCTGTCGTTGATGTTAATGGTACAGA 347
||||||||||||||| ||||| || | ||||||||||||||||| |||||||||| |||
Sbjct 294 GAGAATCCGTAAAACAGTTGGAATCCTGAAGGAGCCTGTCGTTGACGTTAATGGTAGAGA 353
Query 348 AGTGGATATTCAATGTGGAATTTGCTTTGAATCATACAC-TCGAAAGGAAATTGCTA-GT 405
||||||||| ||||||||||||||||||||||||||||| || | | |||||||||| |
Sbjct 354 AGTGGATATCCAATGTGGAATTTGCTTTGAATCATACACTTC-AGATGAAATTGCTACG- 411
Query 406 GTTTCTTGTGGTCATCCTTATTGCAAGACCTGCTGGACTGGTTACATCACTACGAA-AAT 464
||||||||||||||||||||||||||||| |||||||||||||||||| |||| || |||
Sbjct 412 GTTTCTTGTGGTCATCCTTATTGCAAGACTTGCTGGACTGGTTACATCTCTAC-AACAAT 470
Query 465 CGAA-GACGGTCCGGGATGTTTAAGGGTTAAATGTCCCGAACCTTCTTGTTACGCTGTTG 523
| || ||||||| ||||||||||||||||||||||| || |||||||||| ||||| |
Sbjct 471 C-AACAACGGTCCAGGATGTTTAAGGGTTAAATGTCCTGAGCCTTCTTGTTCCGCTGCGG 529
Query 524 TTGGTCAAGACATGATCGATGAGGTTACTGA-GAAGAAAGATAAGGACAAGTATTATAGA 582
|||||||||| ||||||||| |||||| | | ||| |||||||||| ||||| ||||||
Sbjct 530 TTGGTCAAGATATGATCGATAAGGTTAGTAATAAAG-AAGATAAGGAGAAGTACTATAGA 588
Query 583 TATTTTCTTAGGTCTTATGTCGAAG-A---CGGGA-AGAAGATGAAATGGTGTCCATCAC 637
|||||||||||||||||||| |||| | |||| |||| | ||||||||||||||||
Sbjct 589 TATTTTCTTAGGTCTTATGTGGAAGAAGTTGGGGAGAGAA-CT-AAATGGTGTCCATCAC 646
Query 638 CGGGATGCGAATGCGCG---G--TTGAAT-TT--G-GT-G-A----AAGTAGTGGTTACG 682
||||||||||||| ||| | || | | || | || | | ||||||| |||| |
Sbjct 647 CGGGATGCGAATGTGCGATAGATTTTAGTGTTGGGAGTGGAAGTGGAAGTAGTAGTTATG 706
Query 683 ATGTTGCTTGTTTGTGTTCGTATAGGTTTTGCTGGAATTGCAGTGAAGATGCTCACAGTC 742
|| || ||||||||||||| |||| |||||||||||||| | |||||||||||||||||
Sbjct 707 ATATTTATTGTTTGTGTTCGCATAGCTTTTGCTGGAATTGTACTGAAGATGCTCACAGTC 766
Query 743 CTGTGGATTGTGAAACAGTGTCAAAATGGATATTCAAGAACCAAGATGAGTCGGAGAACA 802
||||||||||||| || || ||||||||||||||||||||||| |||||||| |||||||
Sbjct 767 CTGTGGATTGTGACACGGTCTCAAAATGGATATTCAAGAACCAGGATGAGTCCGAGAACA 826
Query 803 AGAATTGGATACTAGCGAATTCGAAGCCATGTCCTAAATGCAAACGTCCTATCGAGAAGA 862
|||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 827 AGAATTGGATGCTTGCGAATTCAAAGCCTTGTCCTAAATGCAAACGTCCTATCGAGAAGA 886
Query 863 GCCATGGATGTAACCATATGACATGCTCAGCGT-CGTGTGGCCATC-GTTTTTGTTGGAT 920
| |||||||||||| |||||||||||||| | | ||| | |||| | |||||||||||
Sbjct 887 ACGATGGATGTAACCGTATGACATGCTCAG-ATCCATGTAGACATCAG-TTTTGTTGGAT 944
Query 921 TTGTGGTAAATCATA-TAGTGATCACTATGCTTGCAACAA-TTATGTTGA--AG-ATGCT 975
|||| | || || | || || |||| |||||||||||| || ||||| || | |||
Sbjct 945 TTGTCTTGAACCACATTA-TGGTCACGGTGCTTGCAACAAGTT-CGTTGAGGAGAAGGCT 1002
Query 976 GATCACGATAAGAGAACATTGCTTCAGAGTGAAATCAAAAGATACACGCATTATTATGTA 1035
|| | | |||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1003 GA--AAG-TAAGAGAACATTGCTTCAGAATGAAATCAAAAGATACACGCATTATTATATA 1059
Query 1036 AGATGGGTAGAA-AATCAATCGTCGAGGCTTAAGGCTATGAGTGATCTGGAGAAATTCCA 1094
||||||| | || ||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 1060 AGATGGGCA-AACAATCAATCGTCGAGGCTAAAGGCTATGAGTGATCTGGAGAAGTTGCA 1118
Query 1095 ATCGGTGCAGCTAAAGCAGCTTAGTGACAATCAGTGCAAACCAAAAATTGATCTCCAATT 1154
|||||||||||| |||||||||||||| || || |||||||| ||| ||||||||||||
Sbjct 1119 ATCGGTGCAGCTTAAGCAGCTTAGTGATAAACAAAGCAAACCAGAAACTGATCTCCAATT 1178
Query 1155 CA-TTGTAGATGCATGGCTTCAGATCATCGAATGTAGGAGAGTCTTGAAATGGACATATG 1213
|| | ||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1179 CACCT-TAGATGCATGGATTCAGATCCTCGAATGTAGGAGAGTCTTGAAATGGACATATG 1237
Query 1214 CATATGGATACTACCTTGATAATCTCGCCAAGCGACCATTGTTT-GAGTATTTGCAAGGG 1272
||||||||||||||||| || ||||||||||||||| ||| ||| |||||||||||||||
Sbjct 1238 CATATGGATACTACCTTCATGATCTCGCCAAGCGACAATT-TTTCGAGTATTTGCAAGGG 1296
Query 1273 GAGGCTGAAACAGGTTTGGAGAGGCTTCATCATTGTGCAGAGAATGAGTTGAAACAATTT 1332
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1297 GAGGCTGAAACAAGTTTAGAGAGGCTTCATCATTGTGCAGAGAATGAGTTGAAACAGTTT 1356
Query 1333 TTCATTAAAAGTGAAGATCCATCCGATACTTTCAATGCATTCCGGATGAAATTAACTGGT 1392
||| ||||| ||||||||||||||| |||||| ||| |||||||||||||||||| |
Sbjct 1357 ATCAATAAAACTGAAGATCCATCCGAAACTTTCTCTGCTTTCCGGATGAAATTAACTAAT 1416
Query 1393 TTGACTAAAGTAACTAAAACCTATTTCGATAATCTGGTGAAAGCTTTGGAGAATGGTCTT 1452
|||||||| |||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 1417 TTGACTAATGTAACTAAAACCTACTTCGAAAATCTGGTGAAAGCTTTGGAAAATGGTCTT 1476
Query 1453 GCTGATGTG--A-------------C--C-AAATCAAGTGAAGAATCTGCTGATTTTCTC 1494
||||||||| | | | |||||||| |||||||||| ||||||||||
Sbjct 1477 GCTGATGTGGCATATAATTATGAGACGACCAAATCAAGCGAAGAATCTGATGATTTTCTC 1536
Query 1495 GAAACACAAAAGCTATATGATGCTTATATAAGTGAAGGCTGCTTCTTCTGA 1545
||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1537 GAAACACAAAAGCTATATGATACTTATATAAGTGAAGGCTACTTCTTCTGA 1587
> Ahg933725 jgi|Araly1|933725|scaffold_401713.1
Length=1555
Score = 743 bits (402), Expect = 0.0
Identities = 752/920 (82%), Gaps = 27/920 (3%)
Strand=Plus/Plus
Query 562 GATAAGGACAAGTATTATAGATATTTTCTTAGGTCTTATGTCGAAGACGGGAAGAAGATG 621
|||||||| || ||| |||||||| |||||||||||||||||||||| |||||||||||
Sbjct 513 GATAAGGAGAAATATCATAGATATCTTCTTAGGTCTTATGTCGAAGAAGGGAAGAAGATT 572
Query 622 AAATGGTGTCCATCACCGGGATGCGAATGCGCGGTTGAATTTGGTGAAAGT--A-GT-G- 676
|||||||||||||||||||||||||||| || |||||||||||| |||| | || |
Sbjct 573 AAATGGTGTCCATCACCGGGATGCGAATATGCTATTGAATTTGGTGGAAGTGGAAGTAGT 632
Query 677 -GTTACGATGTTGCTTGTTTGTGTTCGTATAGGTTTTGCTGGAATTGCAGTGAAGATGCT 735
||||||||||| |||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct 633 AGTTACGATGTTTCTTGTTTGTGTTCGTATAGGTTCTGCTGGAATTGCTGTGAAGACGCT 692
Query 736 CACAGTCCTGTGGATTGTGAAACAGTGTCAAAATGGATATTCAAGAACCAAG-ATGAGTC 794
|| | |||||||||||||||||| |||||||| ||| || | |||||| ||| |||||||
Sbjct 693 CATACTCCTGTGGATTGTGAAACGGTGTCAAAGTGGTTACTAAAGAAC-AAGGATGAGTC 751
Query 795 GGAGAACAAGAATTGGATACTAGCGAATTCGAAGCCATGTCCTAAATGCAAACGTCCTAT 854
||||||| |||||||||||| || || | ||||| |||||||||||||| ||||||||
Sbjct 752 CGAGAACACGAATTGGATACTTGCTAAGACAAAGCCTTGTCCTAAATGCAAGCGTCCTAT 811
Query 855 CGAGAAGAGCCATGGATGTAACCATATGACATGCTCAGCGTC-GTGTGGCCATCGTTTTT 913
||||||| | ||||||||||||||||| |||||||||| || |||| | ||| |||||
Sbjct 812 TGAGAAGAACAATGGATGTAACCATATGTCATGCTCAGC-TCCGTGTAGACATTATTTTT 870
Query 914 GTTGGATTTGTGGTAAATCATAT-AGT-GATCACTATGCTTGCAACAATTATGTTGAAGA 971
||||| ||| | || ||| | || | |||| | ||||||||| ||| |||||
Sbjct 871 GTTGGGCTTGCCTTCAACCAT-TGAGCAG-TCACCAGGCTTGCAACGCGTATAAAGAAGA 928
Query 972 TGCTGATCACGA---TAAGAGAACATTG-CTTCAGAGTGAAATCAAAAGATACACGCATT 1027
||| || |||||||| | | || ||| || ||| | |||||||| ||||
Sbjct 929 CAATGAGGTTGAAACTAAGAGAAAAAGGGCTAAAGA-TGCGATCGATAGATACACACATT 987
Query 1028 ATTATGTAAGATGGGTAGAAAATCAATCGTCGAGGCTTAAGGCTATGAGTGATCTGGAGA 1087
| |||| |||||||| | ||||||||||||||||| |||||| | |||||||| ||||
Sbjct 988 ACTATGAAAGATGGGCATTCAATCAATCGTCGAGGCTAAAGGCTGTAAGTGATCTAGAGA 1047
Query 1088 AATTCCAATCGGTGCAGCTAAAGCAGCTTAGTGACAATCAGTGCAAACCAAAAATTGATC 1147
||| || || |||||||| ||| ||||||||||||||||| || |||| ||| | | |
Sbjct 1048 AATGGCAGTCAGTGCAGCTTAAGGAGCTTAGTGACAATCAGAGCTCACCAGAAAGTCAGC 1107
Query 1148 TCCAATTCATTGTAGATGCATGGCTTCAGATCATCGAATGTAGGAGAGTCTTGAAATGGA 1207
| | |||| |||||||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 1108 TTCGTTTCACCGTAGATGCGTGGCTTCAGATCATTGAATGTAGGAGGGTCTTGAAATGGA 1167
Query 1208 CATATGCATATGGATACTACCT--TGA-T-AATCTCGC--CAAGCGACCATTGTTTGAGT 1261
| |||||||||||||||||||| | | | || || ||||||| ||| |||||||
Sbjct 1168 CCTATGCATATGGATACTACCTACTTACTCAAGAGCGTGACAAGCGAGAATTTTTTGAGT 1227
Query 1262 ATTTGCAAGGGGAGGCTGAAACAGGTTTGGAGAGGCTTCATCATTGTGCAGAGAATGAGT 1321
|||||||||||||||| ||||| ||||||||||| |||||||||||||||||| | ||||
Sbjct 1228 ATTTGCAAGGGGAGGCAGAAACTGGTTTGGAGAGACTTCATCATTGTGCAGAGGAGGAGT 1287
Query 1322 TGAAACAATTTTTCATTAAAAGTGAAGATCCATCCGATACTTTCAATGCAT-TCCGGATG 1380
||||||| ||| || ||||| || ||| ||||| | | |||| || | |||||||
Sbjct 1288 TGAAACAGTTTATCGGTAAAACTGTAGACCCATCAAAAAATTTCGGTG-AGCTCCGGATA 1346
Query 1381 AAATTAACTGGTTTGACTAAAGTAACTAAAACCTATTTCGATAATCTGGTGAAAGCTTTG 1440
||||||| || ||||||| |||||| | |||||| ||||| ||||||||||||||||||
Sbjct 1347 AAATTAATTGATTTGACTGTAGTAACCAGAACCTACTTCGAAAATCTGGTGAAAGCTTTG 1406
Query 1441 GAGAATGGTCTTGCTGATGT 1460
|| |||||||||||||||||
Sbjct 1407 GATAATGGTCTTGCTGATGT 1426
Score = 392 bits (212), Expect = 4e-108
Identities = 433/531 (82%), Gaps = 49/531 (9%)
Strand=Plus/Plus
Query 1 ATGGATTATTCAGATGATGACATGATCGATAACGAATCA-G-G-GGAGGA-GA--A---T 51
||||||||||||||||||||||| ||||||| | |||| | | |||||| || | |
Sbjct 21 ATGGATTATTCAGATGATGACATAATCGATATCTCATCAGGAGAGGAGGAGGAGGATCTT 80
Query 52 AACAGCGATGGTGGTGGTAATGAATCCTACAACTACAACGCTGCGGTAGACACAATTATT 111
||| |||||||||| | | |||||| | ||||| | | | ||||||||||| |
Sbjct 81 TACATCGATGGTGGT-AT-A-GAATCCGATGACTAC--C-ATTTTGAAGACACAATTAGT 134
Query 112 CTATCTGAGAAAAGTTACGTGATTATCAAGGAAGAAGAGATTCTGAAGCTTCAAAGAGAC 171
| |||||||||||||||||| ||| ||||||||||||| ||||| |||| ||||||||||
Sbjct 135 CGATCTGAGAAAAGTTACGTAATTCTCAAGGAAGAAGATATTCTCAAGCATCAAAGAGAC 194
Query 172 GACATCGAACGAGTTTCCACGATTCTCTTTCTAAGCCAAGTGGAAGCGATTGTTCTGCTT 231
|| |||||||||||||||||| ||||| ||||||||| || ||||||| ||||| |||
Sbjct 195 GATATCGAACGAGTTTCCACGGCTCTCTCTCTAAGCCACGTCGAAGCGACCGTTCTTCTT 254
Query 232 CTTCACTATCATTGGTGTGTTAGTAA-ACTCGAAGATGAATGGTTTACGGACGAAGAGAG 290
||||||| ||||||| ||| |||||| | |||||||||||||||||||||||| | ||||
Sbjct 255 CTTCACTTTCATTGGAGTGCTAGTAAGA-TCGAAGATGAATGGTTTACGGACG-A-AGAG 311
Query 291 AATCCGTAAAACCGTTGGTATATTAAAGGAGCCTGTCGTTGATGTTAATGGTACAGAAGT 350
| | || || | |||| | | ||||| | ||| || ||||||
Sbjct 312 -A---G--AATCC----G-----TAAA--A--C---CGTTG--G--AAT--TAGAGAAGT 343
Query 351 GGATATTCAATGTGGAATTTGCTTTGAATCATACACTCGA-AAGGAAATTGCTAGTGTTT 409
| |||| || |||||||||||||||||||||||||||||| ||| ||||||| || ||||
Sbjct 344 GAATATCCATTGTGGAATTTGCTTTGAATCATACACTCGAGAAG-AAATTGCAAGGGTTT 402
Query 410 CTTGTGGTCATCCTTATTGCAAGACCTGCTGGACTGGTTACATCACTACGAAAATCGAAG 469
|||||||||||||||||||||| || || |||||||||||||||||||| ||||||||||
Sbjct 403 CTTGTGGTCATCCTTATTGCAATACTTGTTGGACTGGTTACATCACTACAAAAATCGAAG 462
Query 470 ACGGTCCGGGATGTTTAAGGGTTAAATGTCCCGAACCTTCTTGTTACGCTG 520
||||||| ||||||||||||||||||||||| || |||||||||| |||||
Sbjct 463 ACGGTCCAGGATGTTTAAGGGTTAAATGTCCTGAGCCTTCTTGTTCCGCTG 513
> Ahg932865 jgi|Araly1|932865|scaffold_400853.1
Length=378
Score = 283 bits (153), Expect = 2e-75
Identities = 270/326 (83%), Gaps = 10/326 (3%)
Strand=Plus/Plus
Query 137 TCAAGGAAGAAGAGATTC--T-G-AAGCTTCAAAGAGACGACATCGAACGAGTTTCCACG 192
||||||||||||| |||| | | |||| ||||| | |||| ||||||||||||||||||
Sbjct 50 TCAAGGAAGAAGATATTCGATCGTAAGCATCAAATAAACGATATCGAACGAGTTTCCACG 109
Query 193 ATTCTCTTTC-TAAGCCAAGTGGAAGCGATTGTTCTGCTTCTTCACTATCATTGGTGTGT 251
||||| | | ||| |||| |||| |||| ||||||||||||| ||||||||| ||||
Sbjct 110 GTTCTC-TCCATAAATCAAGACGAAGTGATTATTCTGCTTCTTCATTATCATTGGAGTGT 168
Query 252 TAGTAAACTCGAAGATGAA-TGGTTTACGGACGAAGAGAGAATCCGTAAAACCGTTGGTA 310
||| ||| |||||||| || | ||| |||||||||||||||||||||||||||||||||
Sbjct 169 TAGCAAATTCGAAGAT-AATTTTTTTTCGGACGAAGAGAGAATCCGTAAAACCGTTGGTA 227
Query 311 TATTAAAGGAGCCTGTCGTTGATGTTAATGGTACAGAAGTGGATATTCAATGTGGAATTT 370
|| | ||| | | ||| |||||| |||||| || ||||| |||| || |||| |||||
Sbjct 228 TACTGAAGAATCTTGTAGTTGATTTTAATGATAGAGAAGAAAATATCCAGTGTGAAATTT 287
Query 371 GCTTTGAATCATACACTCGAAAGGAA-ATTGCTAGTGTTTCTTGTGGTCATCCTTATTGC 429
|||||||||||||||||||| || || || | | ||||||||||||||||||||||||
Sbjct 288 GCTTTGAATCATACACTCGAGAG-AACATCACAACAGTTTCTTGTGGTCATCCTTATTGC 346
Query 430 AAGACCTGCTGGACTGGTTACATCAC 455
|| || |||| ||| ||||||||||
Sbjct 347 AAAACTTGCTAGACAAGTTACATCAC 372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57859082155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5