BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31780.1
Length=1603
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320921 jgi|Araly1|320921|fgenesh1_pm.C_scaffold_4000978 1295 0.0
Ahg933725 jgi|Araly1|933725|scaffold_401713.1 1256 0.0
Ahg932865 jgi|Araly1|932865|scaffold_400853.1 279 3e-74
Ahg470601 jgi|Araly1|470601|fgenesh2_kg.1__555__AT1G05890.1 191 2e-47
> Ahg320921 jgi|Araly1|320921|fgenesh1_pm.C_scaffold_4000978
Length=1587
Score = 1295 bits (701), Expect = 0.0
Identities = 1250/1505 (83%), Gaps = 78/1505 (5%)
Strand=Plus/Plus
Query 73 GACATCATCGATATCGAATCA--GGA-GAGGAGGAT-TTGTACAGCGATGGTGGTAACG- 127
|||||||||||||| |||||| ||| ||||||||| | |||||||||||||||||||
Sbjct 19 GACATCATCGATATGGAATCAGGGGAGGAGGAGGATCAT-TACAGCGATGGTGGTAACGA 77
Query 128 -TAT-CCGATGACTACAACC-C-TGTGGACGACACAATTAGTCGATCTGAGAAAAGTTAC 183
||| ||||| ||||| || | || || ||| |||||| || ||||||||||||||||
Sbjct 78 ATATGCCGATCACTAC--CCTCTTGAAGAAGACGCAATTATTCCATCTGAGAAAAGTTAC 135
Query 184 GTTGTTGTTAAGGAAGAAGACATTCTTAAGCTTCAAAGAGACGATATCGAACAAGTTTCG 243
|| ||| | |||||||||||||||| |||| |||||||||||||||||||| ||||||
Sbjct 136 GTAGTTCTCAAGGAAGAAGACATTCACAAGCATCAAAGAGACGATATCGAACGAGTTTCC 195
Query 244 ACGGTTCTCTCTGTAAGCCAAGTGGAATCGATTGTTCTGCTTCTTCACTATCATTGGTGT 303
|||| ||||||| |||||||||| ||| ||| ||||| |||||||| ||||||||| ||
Sbjct 196 ACGGCTCTCTCTCTAAGCCAAGTCGAAGCGACCGTTCTTCTTCTTCATTATCATTGGAGT 255
Query 304 GTTAGTAA-ACTCGAAGATGAATGGTTTACGGACGAAGAGAGAATCCGTAAAACCGTTGG 362
|||||||| | || | || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 256 GTTAGTAAGA-TCTACGAGGAATGGTTTACGGACGAAGAGAGAATCCGTAAAACAGTTGG 314
Query 363 TATATTAAAGGAGCCTGTCGTTGATGTTAATGGTACAGAAGTGGATATTCAATGTGGAAT 422
|| | ||||||||||||||||| |||||||||| |||||||||||| |||||||||||
Sbjct 315 AATCCTGAAGGAGCCTGTCGTTGACGTTAATGGTAGAGAAGTGGATATCCAATGTGGAAT 374
Query 423 TTGCTTTGAATCATACACT-CGAAAGGAAATTGCTAGGGTTTCTTGTGGTCATCCTTATT 481
||||||||||||||||||| | | | |||||||||| |||||||||||||||||||||||
Sbjct 375 TTGCTTTGAATCATACACTTC-AGATGAAATTGCTACGGTTTCTTGTGGTCATCCTTATT 433
Query 482 GCAAGACCTGCTGGACTGGTTACATCACTACGAA-AATCGAAGA-CGGTCCGGGATGTTT 539
||||||| |||||||||||||||||| |||| || |||| || | |||||| ||||||||
Sbjct 434 GCAAGACTTGCTGGACTGGTTACATCTCTAC-AACAATC-AACAACGGTCCAGGATGTTT 491
Query 540 AAGGGTTAAATGTCCCGAACCTTCTTGTTACGCTGTTGTTGGTCAAGACATGATCGATGA 599
||||||||||||||| || |||||||||| ||||| ||||||||||| ||||||||| |
Sbjct 492 AAGGGTTAAATGTCCTGAGCCTTCTTGTTCCGCTGCGGTTGGTCAAGATATGATCGATAA 551
Query 600 GGTTACTGAGAA-GAAAGATAAGGACAAGTATTATAGATATTTTCTTAGGTCTTATGTCG 658
||||| | | || ||| |||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 552 GGTTAGTAATAAAGAA-GATAAGGAGAAGTACTATAGATATTTTCTTAGGTCTTATGTGG 610
Query 659 AAGACG--GG--A-AGAAGATGAAATGGTGTCCATCACCGGGATGCGAATACGCGGTTGA 713
|||| | || | |||| | |||||||||||||||||||||||||||| ||| | ||
Sbjct 611 AAGAAGTTGGGGAGAGAAC-T-AAATGGTGTCCATCACCGGGATGCGAATGTGCGATAGA 668
Query 714 ATTTGGTGT----A----AA-TGGAAGTAGTAGTTACGATGTTTCTTGTTTGTGTTCGTA 764
||| |||| | || ||||||||||||||| ||| ||| ||||||||||||| |
Sbjct 669 TTTTAGTGTTGGGAGTGGAAGTGGAAGTAGTAGTTATGATATTTATTGTTTGTGTTCGCA 728
Query 765 TAAG-TTTTGCTGGAATTGCTG-TGAAGACGCTCACTCTCCTGTGGATTGTGAAACAGTG 822
|| | |||||||||||||| | |||||| |||||| ||||||||||||||| || ||
Sbjct 729 TA-GCTTTTGCTGGAATTG-TACTGAAGATGCTCACAGTCCTGTGGATTGTGACACGGTC 786
Query 823 TCAAAGTGGTTACTAAAGAACAAGGATGAGTCGGAGAACATGAATTGGATACTTGCTAAG 882
||||| ||| || | |||||| |||||||||| ||||||| ||||||||| ||||| ||
Sbjct 787 TCAAAATGGATATTCAAGAACCAGGATGAGTCCGAGAACAAGAATTGGATGCTTGCGAAT 846
Query 883 ACAAAGCCTTGTCCTAAATGCAAGCGTCCTATTGAGAAGAAC-ACTGGATGTAACCATAT 941
|||||||||||||||||||||| |||||||| ||||||||| | ||||||||||| |||
Sbjct 847 TCAAAGCCTTGTCCTAAATGCAAACGTCCTATCGAGAAGAACGA-TGGATGTAACCGTAT 905
Query 942 GTCATGCTCAGCTCCATGTAGACATTATTTTTGTTGGGCATGCCTTCAACCA--TTGA-G 998
| ||||||||| ||||||||||||| | ||||||||| || ||| ||||| || | |
Sbjct 906 GACATGCTCAGATCCATGTAGACATCAGTTTTGTTGGATTTGTCTTGAACCACATT-ATG 964
Query 999 CGATCACAAG-GCTTGCAACGCGTT--TAAAGCAGACAATGAGGATGAAACTAAGAGAAA 1055
| |||| | ||||||||| ||| | || ||| | | | ||||| ||||||||
Sbjct 965 -G-TCACG-GTGCTTGCAACAAGTTCGTTGAGGAGA-A--G-GC-TGAAAGTAAGAGAAC 1016
Query 1056 AAGGGCTAAAGA-TGCGATCGATAGATACACGCATTTTTATGA-AAGATGGGCATTCAAT 1113
| | || ||| || ||| | ||||||||||||| |||| | |||||||||| ||||
Sbjct 1017 ATTG-CTTCAGAATGAAATCAAAAGATACACGCATTATTAT-ATAAGATGGGCAAACAAT 1074
Query 1114 CAATCCTCGAGGCTTAAAG-CTATGAGTGATTTGGAGAAATGGCAATCGGTGGAGCTTAA 1172
||||| |||||||| |||| ||||||||||| ||||||| | |||||||||| |||||||
Sbjct 1075 CAATCGTCGAGGCT-AAAGGCTATGAGTGATCTGGAGAAGTTGCAATCGGTGCAGCTTAA 1133
Query 1173 GCAGCTTAGTGACATTCAGAGCACACCAGAAACTCAGCTC-AGTTTCACCGTAGATGCAT 1231
|||||||||||| | || |||| |||||||||| | ||| | || |||| |||||||||
Sbjct 1134 GCAGCTTAGTGATAAACAAAGCAAACCAGAAACTGATCTCCAATT-CACCTTAGATGCAT 1192
Query 1232 GGCTTCAGATCATCGAGTGTAGGAGGGTCTTGAAATGGACCTATGCATATGGATACTACA 1291
|| |||||||| |||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1193 GGATTCAGATCCTCGAATGTAGGAGAGTCTTGAAATGGACATATGCATATGGATACTACC 1252
Query 1292 TACTT-AGTCAAG--A-GCG-CAACAAG-CGAGTATTTGCAAGCTGAGGCAGAAA-ATGG 1344
| | | | || | | ||| ||| |||||||||||||| ||||| |||| | |
Sbjct 1253 TTCATGA-TCTCGCCAAGCGACAATTTTTCGAGTATTTGCAAGGGGAGGCTGAAACAAG- 1310
Query 1345 TTTGGAGAGACTTCATCATTGTGCAGAGGAGGAGTTGAAACAGTTTATCGGGAAAATTGA 1404
||| ||||| |||||||||||||||||| | |||||||||||||||||| |||| |||
Sbjct 1311 TTTAGAGAGGCTTCATCATTGTGCAGAGAATGAGTTGAAACAGTTTATCAATAAAACTGA 1370
Query 1405 AGACCCATCAAAAAATTTCGGTGAGCTCCG-AGCGAAATTAATTGATTTGACTAAAGCAA 1463
||| ||||| ||| |||| || |||| | |||||||| | |||||||||| | ||
Sbjct 1371 AGATCCATCCGAAACTTTCTCTGCTTTCCGGAT-GAAATTAACTAATTTGACTAATGTAA 1429
Query 1464 CTAAAACCTACTTCGAAAATCTGGTGAAAGCTTTGGAGAACGGTCTTGTTGACGTGGCAT 1523
||||||||||||||||||||||||||||||||||||| || ||||||| ||| |||||||
Sbjct 1430 CTAAAACCTACTTCGAAAATCTGGTGAAAGCTTTGGAAAATGGTCTTGCTGATGTGGCAT 1489
Query 1524 ATAAT 1528
|||||
Sbjct 1490 ATAAT 1494
> Ahg933725 jgi|Araly1|933725|scaffold_401713.1
Length=1555
Score = 1256 bits (680), Expect = 0.0
Identities = 872/962 (91%), Gaps = 24/962 (2%)
Strand=Plus/Plus
Query 616 GATAAGGACAAGTATTATAGATATTTTCTTAGGTCTTATGTCGAAGACGGGAAGAAGATG 675
|||||||| || ||| |||||||| |||||||||||||||||||||| |||||||||||
Sbjct 513 GATAAGGAGAAATATCATAGATATCTTCTTAGGTCTTATGTCGAAGAAGGGAAGAAGATT 572
Query 676 AAATGGTGTCCATCACCGGGATGCGAATACGCGGTTGAATTTGGTGTAAATGGAAGTAGT 735
||||||||||||||||||||||||||||| || |||||||||||| || ||||||||||
Sbjct 573 AAATGGTGTCCATCACCGGGATGCGAATATGCTATTGAATTTGGTGGAAGTGGAAGTAGT 632
Query 736 AGTTACGATGTTTCTTGTTTGTGTTCGTATAAGTTTTGCTGGAATTGCTGTGAAGACGCT 795
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 633 AGTTACGATGTTTCTTGTTTGTGTTCGTATAGGTTCTGCTGGAATTGCTGTGAAGACGCT 692
Query 796 CACT-CTCCTGTGGATTGTGAAACAGTGTCAAAGTGGTTACTAAAGAACAAGGATGAGTC 854
|| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 693 CA-TACTCCTGTGGATTGTGAAACGGTGTCAAAGTGGTTACTAAAGAACAAGGATGAGTC 751
Query 855 GGAGAACATGAATTGGATACTTGCTAAGACAAAGCCTTGTCCTAAATGCAAGCGTCCTAT 914
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 CGAGAACACGAATTGGATACTTGCTAAGACAAAGCCTTGTCCTAAATGCAAGCGTCCTAT 811
Query 915 TGAGAAGAACACTGGATGTAACCATATGTCATGCTCAGCTCCATGTAGACATTATTTTTG 974
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 812 TGAGAAGAACAATGGATGTAACCATATGTCATGCTCAGCTCCGTGTAGACATTATTTTTG 871
Query 975 TTGGGCATGCCTTCAACCATTGAGC-GATCACAAGGCTTGCAACGCGTTTAAAGCAGACA 1033
|||||| |||||||||||||||||| | |||| ||||||||||||||| ||||| |||||
Sbjct 872 TTGGGCTTGCCTTCAACCATTGAGCAG-TCACCAGGCTTGCAACGCGTATAAAGAAGACA 930
Query 1034 ATGAGGATGAAACTAAGAGAAAAAGGGCTAAAGATGCGATCGATAGATACACGCATTTTT 1093
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 931 ATGAGGTTGAAACTAAGAGAAAAAGGGCTAAAGATGCGATCGATAGATACACACATTACT 990
Query 1094 ATGAAAGATGGGCATTCAATCAATCCTCGAGGCTTAAAG-CTATGAGTGATTTGGAGAAA 1152
||||||||||||||||||||||||| |||||||| |||| || | |||||| | ||||||
Sbjct 991 ATGAAAGATGGGCATTCAATCAATCGTCGAGGCT-AAAGGCTGTAAGTGATCTAGAGAAA 1049
Query 1153 TGGCAATCGGTGGAGCTTAAGCAGCTTAGTGACATTCAGAGCACACCAGAAACTCAGCT- 1211
||||| || ||| |||||||| |||||||||||| ||||||| ||||||||| ||||||
Sbjct 1050 TGGCAGTCAGTGCAGCTTAAGGAGCTTAGTGACAATCAGAGCTCACCAGAAAGTCAGCTT 1109
Query 1212 CAGTTTCACCGTAGATGCATGGCTTCAGATCATCGAGTGTAGGAGGGTCTTGAAATGGAC 1271
| |||||||||||||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 1110 C-GTTTCACCGTAGATGCGTGGCTTCAGATCATTGAATGTAGGAGGGTCTTGAAATGGAC 1168
Query 1272 CTATGCATATGGATACTACATACTTAGTCAAGAGCGCAACAAGCGAG--T------A-T- 1321
||||||||||||||||||| |||||| ||||||||| ||||||||| | | |
Sbjct 1169 CTATGCATATGGATACTACCTACTTACTCAAGAGCGTGACAAGCGAGAATTTTTTGAGTA 1228
Query 1322 TT-GCAAGCTGAGGCAGAAAATGGTTTGGAGAGACTTCATCATTGTGCAGAGGAGGAGTT 1380
|| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1229 TTTGCAAGGGGAGGCAGAAACTGGTTTGGAGAGACTTCATCATTGTGCAGAGGAGGAGTT 1288
Query 1381 GAAACAGTTTATCGGGAAAATTGAAGACCCATCAAAAAATTTCGGTGAGCTCCGAGCGAA 1440
||||||||||||||| |||| || |||||||||||||||||||||||||||||| | ||
Sbjct 1289 GAAACAGTTTATCGGTAAAACTGTAGACCCATCAAAAAATTTCGGTGAGCTCCG-GATAA 1347
Query 1441 A-TTAATTGATTTGACTAAAGCAACTAAAACCTACTTCGAAAATCTGGTGAAAGCTTTGG 1499
| ||||||||||||||| || ||| | ||||||||||||||||||||||||||||||||
Sbjct 1348 AATTAATTGATTTGACTGTAGTAACCAGAACCTACTTCGAAAATCTGGTGAAAGCTTTGG 1407
Query 1500 AGAACGGTCTTGTTGACGTGGCATATAATGAGA-G--CCAGTCAATAGAAGAACCTGAAT 1556
| || ||||||| ||| || ||||||||||||| | ||| |||| | ||||||||||||
Sbjct 1408 ATAATGGTCTTGCTGATGTTGCATATAATGAGAAGAGCCAATCAACACAAGAACCTGAAT 1467
Query 1557 CT 1558
||
Sbjct 1468 CT 1469
Score = 407 bits (220), Expect = 1e-112
Identities = 405/487 (83%), Gaps = 42/487 (9%)
Strand=Plus/Plus
Query 93 AGGA-GAGGAGGAT-TTGTACAGCGATGGTGGTA-ACGTATCCGATGACTACAACCCTGT 149
|||| ||||||||| || |||| ||||||||||| | | ||||||||||| ||| | |
Sbjct 64 AGGAGGAGGAGGATCTT-TACATCGATGGTGGTATA-GAATCCGATGACT---ACCATTT 118
Query 150 GGACGACACAATTAGTCGATCTGAGAAAAGTTACGTTGTTGTTAAGGAAGAAGACATTCT 209
|| |||||||||||||||||||||||||||||||| || | ||||||||||| |||||
Sbjct 119 TGAAGACACAATTAGTCGATCTGAGAAAAGTTACGTAATTCTCAAGGAAGAAGATATTCT 178
Query 210 TAAGCTTCAAAGAGACGATATCGAACAAGTTTCGACGGTTCTCTCTGTAAGCCAAGTGGA 269
|||| |||||||||||||||||||| |||||| |||| ||||||| ||||||| || ||
Sbjct 179 CAAGCATCAAAGAGACGATATCGAACGAGTTTCCACGGCTCTCTCTCTAAGCCACGTCGA 238
Query 270 ATCGATTGTTCTGCTTCTTCACTATCATTGGTGTGTTAGTAA-ACTCGAAGATGAATGGT 328
| ||| ||||| |||||||||| ||||||| ||| |||||| | |||||||||||||||
Sbjct 239 AGCGACCGTTCTTCTTCTTCACTTTCATTGGAGTGCTAGTAAGA-TCGAAGATGAATGGT 297
Query 329 TTACGGACGAAGAGAGAATCCGTAAAACCGTTGGTATATTAAAGGAGCCTGTCGTTGATG 388
||||||||| | |||| | | || || | |||| | | ||||| |
Sbjct 298 TTACGGACG-A-AGAG-A---G--AATCC----G-----TAAA--A--C---CGTTG--G 331
Query 389 TTAATGGTACAGAAGTGGATATTCAATGTGGAATTTGCTTTGAATCATACACTCGA-AAG 447
||| || ||||||| |||| || |||||||||||||||||||||||||||||| |||
Sbjct 332 --AAT--TAGAGAAGTGAATATCCATTGTGGAATTTGCTTTGAATCATACACTCGAGAAG 387
Query 448 GAAATTGCTAGGGTTTCTTGTGGTCATCCTTATTGCAAGACCTGCTGGACTGGTTACATC 507
||||||| ||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 388 -AAATTGCAAGGGTTTCTTGTGGTCATCCTTATTGCAATACTTGTTGGACTGGTTACATC 446
Query 508 ACTACGAAAATCGAAGACGGTCCGGGATGTTTAAGGGTTAAATGTCCCGAACCTTCTTGT 567
||||| ||||||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 447 ACTACAAAAATCGAAGACGGTCCAGGATGTTTAAGGGTTAAATGTCCTGAGCCTTCTTGT 506
Query 568 TACGCTG 574
| |||||
Sbjct 507 TCCGCTG 513
> Ahg932865 jgi|Araly1|932865|scaffold_400853.1
Length=378
Score = 279 bits (151), Expect = 3e-74
Identities = 268/324 (83%), Gaps = 10/324 (3%)
Strand=Plus/Plus
Query 193 AAGGAAGAAGACATTC--T--TAAGCTTCAAAGAGACGATATCGAACAAGTTTCGACGGT 248
||||||||||| |||| | ||||| ||||| | |||||||||||| |||||| |||||
Sbjct 52 AAGGAAGAAGATATTCGATCGTAAGCATCAAATAAACGATATCGAACGAGTTTCCACGGT 111
Query 249 TCTCTCTGTAAGCCAAGTGGAA-TCGATTGTTCTGCTTCTTCACTATCATTGGTGTGTTA 307
|||||| ||| |||| ||| | |||| ||||||||||||| ||||||||| ||||||
Sbjct 112 TCTCTCCATAAATCAAGACGAAGT-GATTATTCTGCTTCTTCATTATCATTGGAGTGTTA 170
Query 308 GTAAACTCGAAGATGAA-TGGTTTACGGACGAAGAGAGAATCCGTAAAACCGTTGGTATA 366
| ||| |||||||| || | ||| |||||||||||||||||||||||||||||||||||
Sbjct 171 GCAAATTCGAAGAT-AATTTTTTTTCGGACGAAGAGAGAATCCGTAAAACCGTTGGTATA 229
Query 367 TTAAAGGAGCCTGTCGTTGATGTTAATGGTACAGAAGTGGATATTCAATGTGGAATTTGC 426
| ||| | | ||| |||||| |||||| || ||||| |||| || |||| |||||||
Sbjct 230 CTGAAGAATCTTGTAGTTGATTTTAATGATAGAGAAGAAAATATCCAGTGTGAAATTTGC 289
Query 427 TTTGAATCATACACTCGAAAGGAA-ATTGCTAGGGTTTCTTGTGGTCATCCTTATTGCAA 485
|||||||||||||||||| || || || | | ||||||||||||||||||||||||||
Sbjct 290 TTTGAATCATACACTCGAGAG-AACATCACAACAGTTTCTTGTGGTCATCCTTATTGCAA 348
Query 486 GACCTGCTGGACTGGTTACATCAC 509
|| |||| ||| ||||||||||
Sbjct 349 AACTTGCTAGACAAGTTACATCAC 372
> Ahg470601 jgi|Araly1|470601|fgenesh2_kg.1__555__AT1G05890.1
Length=2143
Score = 191 bits (103), Expect = 2e-47
Identities = 384/514 (75%), Gaps = 41/514 (8%)
Strand=Plus/Plus
Query 1034 ATGAGGATGAAACTAAGAGAAAAAGGGCTAAAGATGCGATCGATAGATACACGCATTTTT 1093
|||||| ||||| | | || | | ||| ||| || || | || |||||||| |||| |
Sbjct 1225 ATGAGGCTGAAAGGAGGCGAGAGATGGCAAAAAATTCGCTAGAGAGATACACTCATTACT 1284
Query 1094 ATGAAAGATGGGCATTCAATCAA-TCCTCGAGGCTTAAAGCTATGAGTGATTTGGAG-AA 1151
||||| | |||||| ||||||| | ||||||| ||||||||| | ||| || || ||
Sbjct 1285 ATGAACGCTGGGCAAGCAATCAAGT-GTCGAGGCAAAAAGCTATGGGGGATCTGCAGAAA 1343
Query 1152 ATGGCAATCGGTGGAGCTTAAGCAGCTTAGTGACATTCAGAGCACACCAGAAACTCAGCT 1211
|| |||||| | | ||||| | ||||||||||||| ||| ||||||||||| |||||||
Sbjct 1344 AT-GCAATCAGAGAAGCTTGGGAAGCTTAGTGACATACAGTGCACACCAGAATCTCAGCT 1402
Query 1212 C-AGTTTCACCGTAGATGCATGGCTTCAGATCATCGAGTGTAGGA-GGGT-CTTGAAATG 1268
| ||||| | || | | || ||||| |||||||| || || | || |||| ||| |||||
Sbjct 1403 CAAGTTT-ATCGCACAAGCTTGGCTCCAGATCATTGAATGCA-GACGGGTACTT-AAATG 1459
Query 1269 GACCTATGCATATGGATACTA-CATACTTAG-TCAAG---AGCG-CAA-CAAGCGAGTAT 1321
||| ||||||||||||||||| | ||| || ||| | |||| ||| ||||||
Sbjct 1460 GACATATGCATATGGATACTATC-TAC-CAGATCATGCTAAGCGACAATTTTTTGAGTAT 1517
Query 1322 TTGCAAGCTGAGGCAGA-AAATGGTTTGGAGAGACTTCATC-ATTGTGCAGAGGAGGAGT 1379
||||||| ||||| || | ||||||||||| || || | | || | |||| |||| |
Sbjct 1518 TTGCAAGGGGAGGCTGAGTCA-GGTTTGGAGAGGCTCCA-CAAATGCGTAGAGAAGGA-T 1574
Query 1380 TGAAACAGT-TTATCGGGAAAAT--TGAAGACCCATCA-AAAAATTTCGGTGAGCTCC-G 1434
| | | || || || ||| | ||| | ||| ||| | || ||| | | ||| |
Sbjct 1575 TTAGA-GGTGTT-TC---AAATTGCTGACGGCCCTTCAGATGAA-TTCAATCATTTCCGG 1628
Query 1435 AGCGAAATTAATTGATTTGACTAAAGC--AACTAAAACCTACTTCGAAAATCTGGTGAAA 1492
| | ||||||| || ||| || ||| ||| |||||||||||||||||||||||||||
Sbjct 1629 A-CAAAATTAACTGGTTTAAC--CAGCATAACAAAAACCTACTTCGAAAATCTGGTGAAA 1685
Query 1493 GCTTTGGAGAACGGTCTTGTTGACGTGGCATATA 1526
||| ||||||| ||||||| ||| |||| |||||
Sbjct 1686 GCTCTGGAGAATGGTCTTGCTGATGTGG-ATATA 1718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60068316365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5