BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31790.1
Length=1629
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933727 jgi|Araly1|933727|scaffold_401715.1 2283 0.0
Ahg470572 jgi|Araly1|470572|fgenesh2_kg.1__526__AT1G05680.1 224 2e-57
> Ahg933727 jgi|Araly1|933727|scaffold_401715.1
Length=1414
Score = 2283 bits (1236), Expect = 0.0
Identities = 1350/1406 (96%), Gaps = 4/1406 (0%)
Strand=Plus/Plus
Query 51 CCaaaaa-aaTGAGTGAAGCAAAGAAGGGTCACGTACTGTTTTTTCCATATCCATTACAA 109
||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 12 CCAAAAAGAATGAGTGAAGC--A-AAGGGTCACGTACTGTTTTTTCCATATCCATTACAA 68
Query 110 GGCCACATTAACCCAATGATCCAACTCGCTAAACGCTTATCCAAAAAGGGCATCACCAGC 169
||||||||||||||||||||||||||||||||||||||||||||||||||| || | | |
Sbjct 69 GGCCACATTAACCCAATGATCCAACTCGCTAAACGCTTATCCAAAAAGGGCCTCGCTATC 128
Query 170 ACACTCATCATCGCCTCCAAAGACCACCGTGAACCTTACACCTCCGACGACTACTCCATC 229
||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 129 ACACTCATCATCGCCTCAAAAGACCACCGTGAACCTTACACCTCCGAAGACTATTCCATC 188
Query 230 ACCGTCCACACCATCCACGACGGTTTCTTTCCACATGAACACCCTCACGCCAAGTTCGTA 289
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 189 ACCATCCACACCATCCACGACGGTTTCTTTCCAGATGAACACCCTCACGCCAAGTTCGTA 248
Query 290 GATCTTGACCGTTTCCACAACTCTACTTCTCGAAGCCTGACCGATTTCATCTCTAGTGCG 349
||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 249 GATCTTGACCGTTTCAACAACTCTACTTCTCGTAGCCTCACCGATTTCATCTCTAGTGCG 308
Query 350 AAGTTGTCGGACAATCCTCCAAAAGCTCTGATCTATGATCCATTTATGCCCTTTGCATTG 409
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 AAGTTGTCGGGCAATCCTCCAAAAGCTCTGATCTATGATCCATTTATGCCCTTTGCATTG 368
Query 410 GACATAGCCAAGGACTTGGATCTATACGTAGTGGCATATTTCACTCAACCATGGTTGGCT 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 GACATAGCCAAGGACTTGGATCTATACGTAGTGGCATATTTCACTCAACCATGGTTGGCT 428
Query 470 AGTCTTGTTTACTACCATATCAACGAAGGCACCTACGATGTTCCCGTTGATAGACACGAG 529
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 429 AGCCTTGTTTACTACCATATCAACGAAGGCGCCTACGATGTTCCCGTTGATAGACACGAG 488
Query 530 AACCCAACACTTGCATCGTTTCCTGGTTTCCCATTGTTAAGCCAAGATGATCTGCCTTCG 589
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 489 AACCCAACACTTGCATCTTTTCCAGGTTTCCCATTGTTAAGCCAAGATGATCTGCCTTCG 548
Query 590 TTCGCCTGCGAAAAAGGGTCGTACCCTCTTCTACACGAGTTTGTGGTTAGGCAATTCTCT 649
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 549 TTCGCCTGCGAAAAAGGGTCATACCCTCTTATACACGAGTTTGTGGTTAGGCAATTCTCT 608
Query 650 AATTTATTGCAAGCTGATTGCATTCTCTGCAACACTTTTGATCAACTTGAACCAAAGGTA 709
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 AATTTGTTGCAAGCTGATTGCATTCTCTGCAACACTTTTGATCAACTTGAACCAAAGGTA 668
Query 710 GTGAAATGGATGAATGATCAATGGCCGGTGAAGAACATTGGACCGGTGGTTCCATCGAAG 769
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 669 GTGAAATGGATGAATGATCAGTGGCCGGTGAAGAACATTGGACCGGTAGTTCCGTCGAAG 728
Query 770 TTCTTGGATAACCGGTTGCCAGAAGACAAAGATTACGAACTCGAGAACTCCAAGACAGAG 829
||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 729 TTCCTGGATAATCGGTTGCCAGAAGACAAAGATTACGAACTTGAGAACTCCAAGACAGAG 788
Query 830 CCAGACGAGTCTGTTTTGAAGTGGTTGGGAAACAGGCCGGCGAAGTCGGTGGTTTACGTG 889
||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 789 CCAGACGAGTCTGTTTTGAAGTGGTTGGGGAATAGGCCAGCGAAGTCGGTGGTTTACGTG 848
Query 890 GCGTTTGGGACATTGGTGGCTTTGAGCGAAAAACAGATGAAGGAAATTGCAATGGCGATT 949
||||| |||||||||||| |||||||||||||||||||||| |||| ||||||||||||
Sbjct 849 GCGTTCGGGACATTGGTGTCTTTGAGCGAAAAACAGATGAAAGAAACCGCAATGGCGATT 908
Query 950 AGCCAAACCGGATATCACTTCTTGTGGTCTGTTAGAGAATCCGAGAGAAGCAAACTACCC 1009
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 909 AGACAAACCGGATATCACTTCTTGTGGTCCGTTAGAGAATCCGAGAGAAGCAAACTACCG 968
Query 1010 TCTGGTTTTATCGAAGAGGCAGAGGAGAAAGACTCTGGACTTGTGGCTAAGTGGGTTCCT 1069
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 969 TCTGGTTTTATCGAAGATGCAGAGGAGAAAGACTATGGACTTGTGGCTAAGTGGGTTCCT 1028
Query 1070 CAGCTAGAGGTTTTAGCACATGAATCAATCGGGTGTTTCGTGTCACACTGTGGATGGAAC 1129
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 CAGCTAGAGGTTTTGGCACATGAATCAATCGGGTGTTTCGTGTCACACTGTGGATGGAAC 1088
Query 1130 TCGACATTGGAGGCACTATGCTTAGGGGTTCCAATGGTGGGCGTGCCTCAGTGGACTGAT 1189
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1089 TCGACATTGGAGGCACTGTGCTTAGGGGTTCCAATGGTGGGAATGCCTCAGTGGACGGAT 1148
Query 1190 CAGCCCACAAATGCTAAGTTTATAGAGGATGTGTGGAAGATTGGGGTTAGAGTGAGGACC 1249
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1149 CAGCCCACAAATGCTAAGTTCATAGAGGATGTGTGGAAGATTGGGGTTAGAGTGAGGACC 1208
Query 1250 GATGGAGAAGGGCTTTCGAGTAAAGAAGAGATTGCGAGATGCATTGTTGAGGTCATGGAA 1309
||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1209 GATGGAGAAGGGCTTGCGAGTAAGGAAGAGATTGCGAGATGCGTTGTTGAGGTCATGGAA 1268
Query 1310 GGAGAGAGAGGGAAAGAGATAAGGAAGAATGTTGAGAAGCTTAAGGTGTTGGCTCGCGAA 1369
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1269 GGAGAGAGAGGGAAAGAGATGAGGAAGAATGTTGAGAAGCTTAAGGTGTTGGCTCGTGAA 1328
Query 1370 GCTATCTCTGAAGGAGGTAGTTCCGACAAGAAGATTGATGAGTTTGTTGCTCTTTTGACT 1429
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1329 GCTATCTCTGAAGGAGGTAGTTCCGACAAGAACATTGATGAGTTTGTTGCTCTTTTGACT 1388
Query 1430 TAACAATTTGAAACTGAGATGTCATC 1455
|||||||||||| |||||||||||||
Sbjct 1389 TAACAATTTGAATCTGAGATGTCATC 1414
> Ahg470572 jgi|Araly1|470572|fgenesh2_kg.1__526__AT1G05680.1
Length=1503
Score = 224 bits (121), Expect = 2e-57
Identities = 294/374 (79%), Gaps = 25/374 (7%)
Strand=Plus/Plus
Query 1057 TAAG-TGG-GTTCCTCAGCTAGAGGT-TTTAGCACATGAATCAATCGGGTGTTTCGTGTC 1113
|||| ||| | ||||||||| || || || |||||| |||||||||| |||||| | |
Sbjct 1039 TAAGCTGGAG-TCCTCAGCTTGACGTACTT-GCACATAAATCAATCGGTTGTTTCTTAAC 1096
Query 1114 ACACTGTGGATGGAACTCGACATT-GGAGGCACTATG-CTTAGGG-GTTCCAATGGTGGG 1170
|| |||||||||||||||| || | ||| | | || || ||| ||||||||| | ||
Sbjct 1097 CCATTGTGGATGGAACTCGATGTTAGAAGG-A-T-TGAGTTTGGGAGTTCCAATGATTGG 1153
Query 1171 CGTGCCTCAGTGGACTGATCAGCCCACAAATGCTAAGTTTATAGAGGATGTGTGGAAGAT 1230
|||| || ||||||||||||||||||||||||||||| || ||||||||||||||| |
Sbjct 1154 TATGCCACACTGGACTGATCAGCCCACAAATGCTAAGTTCATGGAGGATGTGTGGAAGGT 1213
Query 1231 TGGGGTTAGAGTGA-GGACCGATGGA-GAAGGGCTT-TCGAGTAA-AGAAGAGATTGCGA 1286
||||||||| || | || | || | | || ||| || | ||| || ||||||||||| ||
Sbjct 1214 TGGGGTTAGGGTTAAGG-CAGAAG-ATGATGGGTTTGT-GAG-AAGAGAAGAGATTGTGA 1269
Query 1287 GATGCATTGTTGAGGTCATGGAAGGAGAGAGAGGGAAAGAGATAAGGAAGAATGTTGAGA 1346
|| | | | || || ||||| ||||||| |||||||||||| || ||||||| |||||
Sbjct 1270 GAAGTGTGGGAGAAGTTATGGAGGGAGAGAAAGGGAAAGAGATTAGAAAGAATGCTGAGA 1329
Query 1347 AGCTT-AAGGTGTTGGCTCGCGAAGCTA-TCTCTGAAGGAGGTAGTTCCGACAAGAAG-A 1403
|| | || |||||||||| || || | | |||||||||||||| || || |||| | |
Sbjct 1330 AG-TGGAAAGTGTTGGCTCAAGAGGC-AGTTTCTGAAGGAGGTAGCTCTGATAAGA-GCA 1386
Query 1404 TTGATGAGTTTGTT 1417
| |||||||||||
Sbjct 1387 TCAATGAGTTTGTT 1400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61058662735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5