BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31800.1
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482101 jgi|Araly1|482101|fgenesh2_kg.4__1161__AT2G31800.1 1522 0.0
> Ahg482101 jgi|Araly1|482101|fgenesh2_kg.4__1161__AT2G31800.1
Length=1795
Score = 1522 bits (824), Expect = 0.0
Identities = 903/941 (96%), Gaps = 5/941 (1%)
Strand=Plus/Plus
Query 20 agaagaagacgaaagagagaagaagagaaagagaTTTGAAATCATGGCGAATGTAGTGGG 79
||||||||||| || |||| |||||| | ||||||||||||||||||||||| | | |||
Sbjct 1 AGAAGAAGACG-AA-AGAG-AGAAGACACAGAGATTTGAAATCATGGCGAATATCGCGGG 57
Query 80 ACAGCTAAAACGAGGAATCTCGAGACAATTCTCAACTGGATCGCTTCGTCGTACGCTTAG 139
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 ACAACTAAAACGAGGAATCTCGAGACAATTCTCAACTGGATCGCTTCGTCGTACGCTTAG 117
Query 140 TCGTCAATTCACGCGTCAAGCTTCACATGATCCTCGCCGGAACAATATGCGATTTAGTTT 199
||||||||||||||||||||||||||| |||||||||||||||||| |||| || |||||
Sbjct 118 TCGTCAATTCACGCGTCAAGCTTCACACGATCCTCGCCGGAACAATTTGCGGTTCAGTTT 177
Query 200 TGGTCGACAATCGTCTTTAGATCCGATTCGTCGGAGTCCTGATGGTTCTAACGGTCCGCA 259
||||||||||||||| ||||||||||||| ||||||||||| ||||||||| |||||||
Sbjct 178 CGGTCGACAATCGTCTCTAGATCCGATTCGCCGGAGTCCTGAAGGTTCTAACCGTCCGCA 237
Query 260 GCTTGCTGTACCGGATAATCTCGACGCTACTATGCAGCTTCTATTTGTGGCTTGTAGAGG 319
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 ACTTGCTGTACCGGATAATCTCGACGCTACTATGCAGCTTCTATTTGTGGCTTGTAGAGG 297
Query 320 TGATGTTGAAGGTGTTCAGGATCTGCTTGATGAAGGTATTGATGTTAATAGTATCGATCT 379
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 298 TGATGTTGAAGGTGTTCAGGATCTGCTTGATGAAGGAATTGATGTTAATAGCATCGATCT 357
Query 380 TGATGGTCGTACGGCTCTTCATATCGCTGCTTGTGAAGGTCATGTCGATGTTGTCAAGCT 439
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 358 TGATGGTCGTACGGCTCTTCATATCGCTGCTTGTGAAGGTCATGTTGATGTTGTGAAGCT 417
Query 440 TCTTCTTACTAGGAAGGCTAATATTGATGCTCGTGATCGTTGGGGAAGCACGGCAGCTGC 499
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TCTTCTTACCAGGAAGGCTAATATTGATGCTCGTGATCGTTGGGGAAGCACGGCAGCTGC 477
Query 500 TGATGCTAAGTATTATGGTAACATGGATGTTTTCAACATTTTGAAAGCCCGTGGAGCTAA 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TGATGCTAAGTATTATGGTAACATGGATGTTTTCAACATTTTGAAAGCCCGTGGAGCTAA 537
Query 560 AGTTCCGAAAACCAAAAGGACACCCATGGTTGTGGCGAATCCTCGTGAAGTTCCTGAGTA 619
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 538 AGTTCCGAAAACCAAAAGGACACCGATGGTTGTGGCGAACCCTCGTGAAGTTCCTGAGTA 597
Query 620 CGAGTTAAATCCGCAGGAACTTCAAGTTCGGAAAGCTGATGGTATCTCAAAGGGAATATA 679
|||||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CGAGTTAAATCCACAAGAGCTTCAAGTTCGGAAAGCTGATGGTATCTCAAAGGGAATATA 657
Query 680 TCAAGTGGCTAAATGGAATGGGACTAAGGTTTCTGTAAAGATACTTGATAAGGATCTCTA 739
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 658 TCAAGTGGCTAAATGGAATGGGACTAAGGTATCGGTAAAGATACTTGATAAGGATCTCTA 717
Query 740 CAAGGATTC-TGACACTATAAATGCCTTCAAACACGAACTTACTTTATTCGAGAAGGTAC 798
||||||| | ||| || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 718 CAAGGAT-CATGAAACCATAAATGCCTTCAAACACGAACTTACTTTATTCGAGAAGGTGC 776
Query 799 GTCATCCTAATGTTGTGCAATTTGTTGGAGCTGTTACTCAAAATGTCCCCATGATGATTG 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GTCATCCTAATGTTGTGCAATTTGTTGGAGCTGTTACTCAAAATGTCCCCATGATGATTG 836
Query 859 TGTCCGAGTATCATCCTAAAGGGGACCTTGGGAGCTATCTTCaaaaaaaaGGTCGTCTTT 918
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 837 TGTCCGAGTATCATCCTAAAGGTGACCTTGGGAGCTATCTTCAAAAGAAAGGTCGTCTTT 896
Query 919 CTCCAGCCAAAGTTCTAAGATTTGCCCTCGATATAGCCAGG 959
|||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CTCCAGCCAAAGTTCTAAGATTTGCCCTCGATATAGCCAGG 937
Score = 1332 bits (721), Expect = 0.0
Identities = 789/820 (96%), Gaps = 11/820 (1%)
Strand=Plus/Plus
Query 959 GGGAATGAATTATCTTCACGAGTGTAAACCAGAACCAGTAATCCACTGTGATCTAAAACC 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 GGGAATGAATTATCTTCACGAGTGTAAACCAGAACCAGTAATCCACTGTGATCTAAAACC 1041
Query 1019 CAAAAATATTATGCTCGATAGTGGAGGACATCTGAAGGTGGCGGGATTTGGTTTGATAAG 1078
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1042 CAAAAATATTATGCTCGATAGTGGAGGACATCTGAAGGTGGCAGGATTTGGTTTGATAAG 1101
Query 1079 TTTTGCAAAGTTATCATCTGATAAATCAAAAATCCTTAATCACGGGGCCCATATAGATCC 1138
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1102 TTTTGCAAAGTTATCATCTGATAAATCAAAAATACTTAATCACGGGGCCCATATAGATCC 1161
Query 1139 TTCAAATTACTGTATGGCACCTGAGGTTTACAAAGATGAAATATTTGACAGGAGTGTGGA 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 TTCAAATTACTGTATGGCACCTGAGGTTTACAAAGATGAAATATTTGACAGGAGTGTGGA 1221
Query 1199 TTCTTACTCTTTTGGTGTCGTATTATATGAGATGATTGAAGGAGTACAACCTTTCCATCC 1258
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1222 TTCTTACTCTTTTGGTGTCGTATTATATGAGATGATTGAAGGAGTACAACCCTTCCATCC 1281
Query 1259 TAAACCC-CCAGAAGAGGCAGTGAAGCTAATGTGTTTAGAAGGAAGAAGACCTTCGTTTA 1317
||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1282 -AAAGCCTCCAGAAGAGGCAGTGAAGCTAATGTGTTTGGAAGGAAGAAGACCTTCGTTTA 1340
Query 1318 AAGCCAAGTCCAAAAGTTGTCCCCAAGAGATGAGAGAATTGATTGAGGAATGCTGGGATA 1377
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1341 AGGCCAAGTCCAAAAGTTGTCCTCAAGAGATGAGAGAATTGATTGAGGAATGCTGGGATA 1400
Query 1378 CGGAAACTTTTGTTAGACCAACATTTTCTGAGATCATAGTTCGATTGGACAAGATCTTTG 1437
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 CGGAAACTTTTGTTAGACCGACATTTTCTGAGATCATAGTTCGATTGGACAAGATCTTTG 1460
Query 1438 TACACTGCTCAAAACAGGGATGGTGGAAAGATACATTCAAGTTCCCTTGG-AAATAGTAC 1496
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 1461 TACACTGCTCAAAACAGGGATGGTGGAAAGATACATTCAAGTTCCCTTGGTAAAAAGCA- 1519
Query 1497 ATAAGAACGTGAGAGGTTT-ACTCAGGAACACGAGAAACTCCA-CAATTCAAGAGCTCTC 1554
| ||||||| ||||||||| ||||||||||||||||||||| | |||| |||||||||||
Sbjct 1520 A-AAGAACGGGAGAGGTTTGACTCAGGAACACGAGAAACTC-AGCAATACAAGAGCTCTC 1577
Query 1555 TTCTCATGTTTACAATAAACTC-GATACAAAGAATACAAAAAGAAACGGCCCTCTCCGAT 1613
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1578 TTCTCATGTTTACAATAAACTAAGATACAAAGAATACAAAAAGAAACGGCCCTCTCCGAT 1637
Query 1614 TTGTCATTGTCTTATCGTGTAACAGTGTACAATGTAAACCCCAAAAAGTACTTTCATCGA 1673
|||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||
Sbjct 1638 TTGTCATTGTCTTATCGTGTAACAATGTACAATGTAAATTG-AAAA-GTACTTTCATCGA 1695
Query 1674 GCTATATAGACTTCTCTACTGCACAGAACTGAGCATTTTGAGATACAATGTATCATATTT 1733
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1696 GCTATATAGACTTCTCTAATGCACAGAACTGAGCATTTTGAGATACAATGTATCATATTC 1755
Query 1734 ATATAAGTATCAAGAAAGCTCTTTATTCTTGTTATGCTTC 1773
||||||||||||||||||||| ||||||||||||||||||
Sbjct 1756 ATATAAGTATCAAGAAAGCTCCTTATTCTTGTTATGCTTC 1795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66543658015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5