BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G31800.1 Length=1773 Score E Sequences producing significant alignments: (Bits) Value Ahg482101 jgi|Araly1|482101|fgenesh2_kg.4__1161__AT2G31800.1 1522 0.0 > Ahg482101 jgi|Araly1|482101|fgenesh2_kg.4__1161__AT2G31800.1 Length=1795 Score = 1522 bits (824), Expect = 0.0 Identities = 903/941 (96%), Gaps = 5/941 (1%) Strand=Plus/Plus Query 20 agaagaagacgaaagagagaagaagagaaagagaTTTGAAATCATGGCGAATGTAGTGGG 79 ||||||||||| || |||| |||||| | ||||||||||||||||||||||| | | ||| Sbjct 1 AGAAGAAGACG-AA-AGAG-AGAAGACACAGAGATTTGAAATCATGGCGAATATCGCGGG 57 Query 80 ACAGCTAAAACGAGGAATCTCGAGACAATTCTCAACTGGATCGCTTCGTCGTACGCTTAG 139 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 58 ACAACTAAAACGAGGAATCTCGAGACAATTCTCAACTGGATCGCTTCGTCGTACGCTTAG 117 Query 140 TCGTCAATTCACGCGTCAAGCTTCACATGATCCTCGCCGGAACAATATGCGATTTAGTTT 199 ||||||||||||||||||||||||||| |||||||||||||||||| |||| || ||||| Sbjct 118 TCGTCAATTCACGCGTCAAGCTTCACACGATCCTCGCCGGAACAATTTGCGGTTCAGTTT 177 Query 200 TGGTCGACAATCGTCTTTAGATCCGATTCGTCGGAGTCCTGATGGTTCTAACGGTCCGCA 259 ||||||||||||||| ||||||||||||| ||||||||||| ||||||||| ||||||| Sbjct 178 CGGTCGACAATCGTCTCTAGATCCGATTCGCCGGAGTCCTGAAGGTTCTAACCGTCCGCA 237 Query 260 GCTTGCTGTACCGGATAATCTCGACGCTACTATGCAGCTTCTATTTGTGGCTTGTAGAGG 319 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 ACTTGCTGTACCGGATAATCTCGACGCTACTATGCAGCTTCTATTTGTGGCTTGTAGAGG 297 Query 320 TGATGTTGAAGGTGTTCAGGATCTGCTTGATGAAGGTATTGATGTTAATAGTATCGATCT 379 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 298 TGATGTTGAAGGTGTTCAGGATCTGCTTGATGAAGGAATTGATGTTAATAGCATCGATCT 357 Query 380 TGATGGTCGTACGGCTCTTCATATCGCTGCTTGTGAAGGTCATGTCGATGTTGTCAAGCT 439 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 358 TGATGGTCGTACGGCTCTTCATATCGCTGCTTGTGAAGGTCATGTTGATGTTGTGAAGCT 417 Query 440 TCTTCTTACTAGGAAGGCTAATATTGATGCTCGTGATCGTTGGGGAAGCACGGCAGCTGC 499 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 TCTTCTTACCAGGAAGGCTAATATTGATGCTCGTGATCGTTGGGGAAGCACGGCAGCTGC 477 Query 500 TGATGCTAAGTATTATGGTAACATGGATGTTTTCAACATTTTGAAAGCCCGTGGAGCTAA 559 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 TGATGCTAAGTATTATGGTAACATGGATGTTTTCAACATTTTGAAAGCCCGTGGAGCTAA 537 Query 560 AGTTCCGAAAACCAAAAGGACACCCATGGTTGTGGCGAATCCTCGTGAAGTTCCTGAGTA 619 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 538 AGTTCCGAAAACCAAAAGGACACCGATGGTTGTGGCGAACCCTCGTGAAGTTCCTGAGTA 597 Query 620 CGAGTTAAATCCGCAGGAACTTCAAGTTCGGAAAGCTGATGGTATCTCAAAGGGAATATA 679 |||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| Sbjct 598 CGAGTTAAATCCACAAGAGCTTCAAGTTCGGAAAGCTGATGGTATCTCAAAGGGAATATA 657 Query 680 TCAAGTGGCTAAATGGAATGGGACTAAGGTTTCTGTAAAGATACTTGATAAGGATCTCTA 739 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 658 TCAAGTGGCTAAATGGAATGGGACTAAGGTATCGGTAAAGATACTTGATAAGGATCTCTA 717 Query 740 CAAGGATTC-TGACACTATAAATGCCTTCAAACACGAACTTACTTTATTCGAGAAGGTAC 798 ||||||| | ||| || ||||||||||||||||||||||||||||||||||||||||| | Sbjct 718 CAAGGAT-CATGAAACCATAAATGCCTTCAAACACGAACTTACTTTATTCGAGAAGGTGC 776 Query 799 GTCATCCTAATGTTGTGCAATTTGTTGGAGCTGTTACTCAAAATGTCCCCATGATGATTG 858 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 GTCATCCTAATGTTGTGCAATTTGTTGGAGCTGTTACTCAAAATGTCCCCATGATGATTG 836 Query 859 TGTCCGAGTATCATCCTAAAGGGGACCTTGGGAGCTATCTTCaaaaaaaaGGTCGTCTTT 918 |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 837 TGTCCGAGTATCATCCTAAAGGTGACCTTGGGAGCTATCTTCAAAAGAAAGGTCGTCTTT 896 Query 919 CTCCAGCCAAAGTTCTAAGATTTGCCCTCGATATAGCCAGG 959 ||||||||||||||||||||||||||||||||||||||||| Sbjct 897 CTCCAGCCAAAGTTCTAAGATTTGCCCTCGATATAGCCAGG 937 Score = 1332 bits (721), Expect = 0.0 Identities = 789/820 (96%), Gaps = 11/820 (1%) Strand=Plus/Plus Query 959 GGGAATGAATTATCTTCACGAGTGTAAACCAGAACCAGTAATCCACTGTGATCTAAAACC 1018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 982 GGGAATGAATTATCTTCACGAGTGTAAACCAGAACCAGTAATCCACTGTGATCTAAAACC 1041 Query 1019 CAAAAATATTATGCTCGATAGTGGAGGACATCTGAAGGTGGCGGGATTTGGTTTGATAAG 1078 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1042 CAAAAATATTATGCTCGATAGTGGAGGACATCTGAAGGTGGCAGGATTTGGTTTGATAAG 1101 Query 1079 TTTTGCAAAGTTATCATCTGATAAATCAAAAATCCTTAATCACGGGGCCCATATAGATCC 1138 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1102 TTTTGCAAAGTTATCATCTGATAAATCAAAAATACTTAATCACGGGGCCCATATAGATCC 1161 Query 1139 TTCAAATTACTGTATGGCACCTGAGGTTTACAAAGATGAAATATTTGACAGGAGTGTGGA 1198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1162 TTCAAATTACTGTATGGCACCTGAGGTTTACAAAGATGAAATATTTGACAGGAGTGTGGA 1221 Query 1199 TTCTTACTCTTTTGGTGTCGTATTATATGAGATGATTGAAGGAGTACAACCTTTCCATCC 1258 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1222 TTCTTACTCTTTTGGTGTCGTATTATATGAGATGATTGAAGGAGTACAACCCTTCCATCC 1281 Query 1259 TAAACCC-CCAGAAGAGGCAGTGAAGCTAATGTGTTTAGAAGGAAGAAGACCTTCGTTTA 1317 ||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1282 -AAAGCCTCCAGAAGAGGCAGTGAAGCTAATGTGTTTGGAAGGAAGAAGACCTTCGTTTA 1340 Query 1318 AAGCCAAGTCCAAAAGTTGTCCCCAAGAGATGAGAGAATTGATTGAGGAATGCTGGGATA 1377 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1341 AGGCCAAGTCCAAAAGTTGTCCTCAAGAGATGAGAGAATTGATTGAGGAATGCTGGGATA 1400 Query 1378 CGGAAACTTTTGTTAGACCAACATTTTCTGAGATCATAGTTCGATTGGACAAGATCTTTG 1437 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1401 CGGAAACTTTTGTTAGACCGACATTTTCTGAGATCATAGTTCGATTGGACAAGATCTTTG 1460 Query 1438 TACACTGCTCAAAACAGGGATGGTGGAAAGATACATTCAAGTTCCCTTGG-AAATAGTAC 1496 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| || | Sbjct 1461 TACACTGCTCAAAACAGGGATGGTGGAAAGATACATTCAAGTTCCCTTGGTAAAAAGCA- 1519 Query 1497 ATAAGAACGTGAGAGGTTT-ACTCAGGAACACGAGAAACTCCA-CAATTCAAGAGCTCTC 1554 | ||||||| ||||||||| ||||||||||||||||||||| | |||| ||||||||||| Sbjct 1520 A-AAGAACGGGAGAGGTTTGACTCAGGAACACGAGAAACTC-AGCAATACAAGAGCTCTC 1577 Query 1555 TTCTCATGTTTACAATAAACTC-GATACAAAGAATACAAAAAGAAACGGCCCTCTCCGAT 1613 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1578 TTCTCATGTTTACAATAAACTAAGATACAAAGAATACAAAAAGAAACGGCCCTCTCCGAT 1637 Query 1614 TTGTCATTGTCTTATCGTGTAACAGTGTACAATGTAAACCCCAAAAAGTACTTTCATCGA 1673 |||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||| Sbjct 1638 TTGTCATTGTCTTATCGTGTAACAATGTACAATGTAAATTG-AAAA-GTACTTTCATCGA 1695 Query 1674 GCTATATAGACTTCTCTACTGCACAGAACTGAGCATTTTGAGATACAATGTATCATATTT 1733 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1696 GCTATATAGACTTCTCTAATGCACAGAACTGAGCATTTTGAGATACAATGTATCATATTC 1755 Query 1734 ATATAAGTATCAAGAAAGCTCTTTATTCTTGTTATGCTTC 1773 ||||||||||||||||||||| |||||||||||||||||| Sbjct 1756 ATATAAGTATCAAGAAAGCTCCTTATTCTTGTTATGCTTC 1795 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66543658015 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5