BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31810.1
Length=1837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482103 jgi|Araly1|482103|fgenesh2_kg.4__1163__AT2G31810.1 2505 0.0
> Ahg482103 jgi|Araly1|482103|fgenesh2_kg.4__1163__AT2G31810.1
Length=1601
Score = 2505 bits (1356), Expect = 0.0
Identities = 1528/1610 (95%), Gaps = 15/1610 (1%)
Strand=Plus/Plus
Query 30 ACCTTCGGCTTCGTCTCGTCAATGGCGGCCATTTCTGTAAGTTCTTCACCATCTATTCGC 89
||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ACCTTGGGCTTCGTCTCTTCAATGGCGGCCATTTCTGTAAGTTCTTCACCATCTCTTCGC 60
Query 90 TGCTTGAGATCGGCATGTTCCGATTCTTCTCCTGCTCTTGTATCCTCGACGCGTGTATCG 149
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TGCTTGAGATCGGCATGTTCCGATTCTTCTCCTGCTCTCGTATCCTCGACGCGTGTATCG 120
Query 150 TTCCCGGCGAAGATTTCATATCTCTCCGGT-ATATCTTCGCACCGTGGCGATGAAATGGG 208
|||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||
Sbjct 121 TTCCCGGCGAAGATTTCATATCTCTCCGGTCA-ATCTTCGCACCGTGGCGAAGAAATGGG 179
Query 209 TAAGAGAATGGAAGGATTCGTTAGAAGCGTCGATGGGAAGATCTCTGATGCGTCTTTCTC 268
|||| ||||||| |||||||||||||| |||||||||||||||||||| || |||| |||
Sbjct 180 TAAGCGAATGGAGGGATTCGTTAGAAGTGTCGATGGGAAGATCTCTGACGCATCTTACTC 239
Query 269 CGAAGCTTCATCTGCGACTCCAAAATCGAAGGTGAGGAAGCACACAATTTCAGTATTTGT 328
||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 240 CGAAGCTTCCTCTACGACTCCAAAATCCAAGGTGAGGAAGCACACAATTTCAGTATTTGT 299
Query 329 TGGAGACGAAAGCGGAATGATTAATAGGATTGCAGGAGTGTTTGCAAGGAGAGGATACAA 388
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 300 TGGAGACGAAAGCGGAATGATTAATAGGATTGCTGGAGTGTTTGCAAGAAGAGGATACAA 359
Query 389 TATTGAGAGTCTTGCTGTTGGTCTGAACAGAGACAAGGCTCTATTCACCATAGTTGTCTG 448
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 360 TATTGAGAGTCTTGCTGTTGGTCTGAACAGAGACAAAGCTTTATTCACCATAGTTGTCTG 419
Query 449 TGGAACTGAAAGGGTACTTCAGCAGGTCATCGAGCAACTCCAGAAGCTCGTTAATGTTCT 508
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 TGGAACTGAAAGGGTACTTCAGCAGGTCATCGAGCAACTTCAGAAGCTCGTTAATGTTCT 479
Query 509 AAAGGTTGAAGATATCTCAAGTGAGCCGCAAGTGGAGCGTGAGCTGATGCTTGTAAAAGT 568
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 AAAGGTTGAAGATATCTCAAGTGAGCCGCAAGTGGAGCGTGAACTGATGCTTGTAAAAGT 539
Query 569 GAATGCACATCCAGAATCCAGGGCAGAGATCATGTGGCTAGTTGACACATTCAGAGCAAG 628
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GAATGCGCATCCAGAATTCAGGGCAGAGATCATGTGGCTAGTTGACACATTCAGAGCAAG 599
Query 629 AGTTGTAGATATAGCGGAACATGCATTGACTATCGAGGTAACTGGAGATCCTGGAAAAAT 688
|||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 AGTTGTGGATATCGCGGAACATGCATTGACTATTGAGGTAACTGGAGATCCTGGAAAAAT 659
Query 689 GATTGCTGTAGAAAGAAATTTGAAAAAGTTTCAGATCAGAGAGATTGTAAGGACAGGAAA 748
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 660 GATTGCTGTAGAAAGAAATTTGAGAAAGTTTCAGATCAGAGAGATTGTAAGGACAGGAAA 719
Query 749 GATAGCACTGAGAAGGGAAAAGATGGGTGCAACTGCTCCATTTTGGCGATTTTCAGCAGC 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GATAGCACTGAGAAGGGAAAAGATGGGTGCAACTGCTCCATTTTGGCGATTTTCAGCAGC 779
Query 809 ATCCTATCCAGATCTCAAGGAGCAAGCGCCTGTTAGTGTTCTTCGAAGTAGCAAAAAAGG 868
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 780 ATCCTATCCAGATCTCAAGGAGCAAGCACCTGTTAGTGTTCTTCGAGGTAGCAAAAAAGG 839
Query 869 AGCCATTGTCCCTCAAAAGGAAACATCAGCAGGGGGAGATGTTTATCCCGTTGAGCCATT 928
|||| | ||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 840 AGCCGTGGTCCCTCAAAATGAAACAACAGCAGGGGGAGATGTTTATCCCGTTGAGCCAAC 899
Query 929 TTTTGACCCCAAGGTACATCGTATTCTCGACGCTCACTGGGGACTTCTCACTGACGAAGA 988
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 900 TTTTGACCCCATGGTACATCGTGTTCTCGACGCTCACTGGGGACTTCTCACTGACGAAGA 959
Query 989 TACGAGTGGACTACGGTCGCATACTCTATCATTGCTTGTAAATGATATTCCAGGAGTTCT 1048
||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 960 TACGAGTGGGCTACGGTCGCATACTCTATCGTTGCTTGTAAATGATACTCCAGGAGTTCT 1019
Query 1049 TAATATTGTGACTGGTGTTTTCGCTCGAAGGGGATACAATATCCAG--AG-CTTGGCCGT 1105
|||||||||||||||||||||||||||||||||||||||||| ||| | |||||| ||
Sbjct 1020 TAATATTGTGACTGGTGTTTTCGCTCGAAGGGGATACAATATTCAGGCATACTTGGCTGT 1079
Query 1106 AGGACATGCTGAAACCAAGGGCATTTCACGCATTACAACAGTTATACCTGCAACAGATGA 1165
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1080 AGGACATGCTGAAACCAAGGGCATTTCACGCATTACAACAGTTGTACCTGCAACAGATGA 1139
Query 1166 ATCGGTCAGCAAATTGGTGCAGCAACTTTACAAACTCGTAGATGTGCATGAGGTCCATGA 1225
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||
Sbjct 1140 ATCGGTCAGCAAATTGGTGCAGCAACTTTATAAACTCGTAGATGTGCATGAGGTTCGTGA 1199
Query 1226 TCTTACTCATTTGCCATTTTCTGAAAGAGAACTGATGCTGATTAAGATTGCCGTGAACGC 1285
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TCTTACGCATTTGCCATTTGCTGAAAGAGAACTGATGCTGATTAAGATTGCCGTGAACGC 1259
Query 1286 TGCTGCTAGAAGAGATGTCCTGGACATTGCTAGTATTTTCAGGGCTAAAGCTGTTGACGT 1345
|||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1260 TGCTGCGAGAAGAGATGTCTTGGATATTGCTAGTATTTTCAGGGCTAAAGCTGTTGACGT 1319
Query 1346 ATCTGATCACACAATTACTTTGCAGCTTACTGGGGATCTAGACAAGATGGTTGCACTGCA 1405
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 ATCCGATCACACAATTACTTTGCAGCTTACTGGGGATCTAGACAAGATGGTTGCACTGCA 1379
Query 1406 AAGGTTATTGGAGCCCTATGGTATATGTGAGGTTGCAAGAACCGGTCGTGTGGCATTGGC 1465
|||||| ||||||| ||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 1380 AAGGTTGCTGGAGCCTTATGGTATATGCGAGGTTGCAAGAACTGGACGTGTGGCATTGGC 1439
Query 1466 TCGTGAATCGGGAGTGGACTCCAAGTACCTTCGTGGATACTCCTTTCCTTTAACAGGCTA 1525
||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||| ||
Sbjct 1440 TCGTGAATCGGGAGTGGACTCCAAGTATCTTCGCGGATACTCCTTTCCTTTATCAGGTTA 1499
Query 1526 AACCGTTGCAGAGTGCATCCATCGAACATCAGAAACTTTTGAAGGTAAAAGTTTCATTAC 1585
||||| ||| |||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1500 AACCGGTGCTGAGTGCATCCAT-G-------GAAACTTTTGAAGGTAAAAGTTTCATTAC 1551
Query 1586 ACAGTCTATGAACCAACTCAAAGACAGA-C-AGAGAGACTGCGTAGATAT 1633
||| | ||||| |||||||||||||||| | |||||||||||||||||||
Sbjct 1552 ACATTTTATGAGCCAACTCAAAGACAGAGCCAGAGAGACTGCGTAGATAT 1601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68981433695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5