BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31840.1
Length=1184
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933732 jgi|Araly1|933732|scaffold_401720.1 1639 0.0
> Ahg933732 jgi|Araly1|933732|scaffold_401720.1
Length=1090
Score = 1639 bits (887), Expect = 0.0
Identities = 1019/1083 (94%), Gaps = 8/1083 (1%)
Strand=Plus/Plus
Query 35 GGAGGAATGATTCTTCCATTTTCGACACAGTTCACTTGCCCTGTTCAGGATAATGGATTC 94
||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||
Sbjct 15 GGAGGAATGATTCTTCCATATTCGACACAGTTCACTTGCCCTGTTCAAGAAAATGGATTC 74
Query 95 AGCCCTTCTTCACTACTTTCCCATTGCAAAAGAGATCGTTTTGAAGTTACTTCGTTGAGA 154
||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 75 AGCTCTTCTTCAGTACTTTCCCATTGCAAAAGAGATCGTTTTGAGGTTACTTCGTTGAGG 134
Query 155 TATGACTCTTTTGGTTCGGTGAAGACTGCCTCCTCCTCGAAGTGGAATGTTATGAGGTCG 214
||||||| ||||| ||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 135 TATGACTGTTTTGCTTCGGTGAAGATTCCCTCCTCCTCGAAGTGGAATGTTATGAGGTCA 194
Query 215 AGGAGAAATGTGAAAGCTTTTGGGTTAGTTGATAAACTTGGgaagaaggtatggagaaag 274
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 195 AGAAGAAATGTGAAAGCTTTTGGGTTGGTTGATAAACTTGGGAAGAAGGTATGGAG-AGG 253
Query 275 -aaagaagaagatagtgacagtgaagatgaggaagatgaagtgaaagaagagaCCTTTGG 333
|||||| ||||||||||||||||||| |||||||||||||||||| |||| | || |||
Sbjct 254 CAAAGAACAAGATAGTGACAGTGAAGACGAGGAAGATGAAGTGAAAAAAGATAACTCTGG 313
Query 334 CGGGAAAGAAGCGAGTCTCGATGATCCAGTAGAGAGACGGGAATGGAGGAAGACGATAAG 393
||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct 314 CGGGAAAGAAGCGAGTCTCGATGATCCGGAAGAAAGACGGGAATGGAGGAAGACGATAAG 373
Query 394 AGAGGTGATTGATAAGCATCCTGATATTGAAGAAGACGAAGAGATTGATATGGTTGAGAA 453
||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 374 AGAGGTGATTGATAAGCATCCTGATATGGAAGAAGAGGAGGAGATTGATATGGTTGAGAA 433
Query 454 GAGGAGGAAGATGCAGAAGCTTCTTGCTGATTACCCACTTGTTGTGAATGAAGAGGATCC 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 GAGGAGGAAGATGCAGAAGCTTCTTGCTGATTACCCACTTGTTGTGAATGAAGAGGATCC 493
Query 514 TAATTGGCCTGAAGATGCTGATGGTTGGGGGTTTAGTTTCAATCAGTTTTTTAATAAGAT 573
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 494 TAATTGGCCTGAAGATGCTGATGGTTGGGGTTTTAGTTTCAATCAGTTTTTTAATAAGAT 553
Query 574 AACGATTaagaatgaaaagaaggaagaagaggatgatgatgaagatagtgaaggagatga 633
|||||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 554 AACGATTAAGAATGAAAAGAAGGATGA------TGATGATGAAGATAATGAAGGAGATGA 607
Query 634 tagtgagaaggagatTGTTTGGCAAGATGATAACTATATACGCCCGATTAAAGATCTCAC 693
|||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 608 TAGTGAGAAGGAGATTGTTTGGCAGGATGATAACTACATACGCCCGATCAAAGATCTCAC 667
Query 694 AACGGCAGAATGGGAAGAGGCGGTGTTCAAAGATATTAGTCCTCTCATGGTCCTTGTTCA 753
||| ||||||||||| ||| ||||||| ||| |||| |||||||||||||| ||||||||
Sbjct 668 AACTGCAGAATGGGAGGAGACGGTGTTTAAATATATCAGTCCTCTCATGGTTCTTGTTCA 727
Query 754 CAACCGCTACAAGAGGCCTAAGGAAAACGAAAAGTTCAGGGAAGAACTAGAGAAGGCGAT 813
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 728 CAACCGCTACAAGAGGCCAAAGGAAAACGAAAAATTCAGGGAAGAACTAGAGAAGGCGAT 787
Query 814 TCAAGTTATATGGAACTGTGGACTTCCTTCACCAAGATGTGTTGCTGTTGATGCTGTGGT 873
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 788 TCAAGTTATATGGAACTGTGGACTTCCATCACCTAGATGTGTTGCTGTTGATGCTGTGGT 847
Query 874 TGAGACAGATTTGGTCTCTGCTCTGAAAGTATCTGTCTTCCCAGAGATCATCTTCACTAA 933
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 848 TGAGACAGATTTGGTCTCTGCTCTGAAAGTATCTGTGTTCCCGGAGATCATCTTCACGAA 907
Query 934 AGCCGGGAAGATACTATACCGCGAGAAAGGCATTAGAACAGCAGATGAGCTTTCAAAAAT 993
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 908 AGCTGGAAAGATACTATACCGTGAGAAAGGCATTAGAACAGCAGATGAGCTTTCAAAAAT 967
Query 994 CATGGCTTTCTTCTATTATGGAGCTGCAAAACCACCTTGTTTGAATGGTGTCGTGAATTC 1053
|||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 968 CATGGCCTTCTTCTATTACGGAGCTGCAAAACCACCTTGTTTGAATGGTGTTGTGAATTC 1027
Query 1054 GCAAGAACAGATTCCTTTAGTCGATGTAAGTGTGAATTAAGCATAAGCCTTTGTGATCTT 1113
||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1028 GCAAGAACATATTCCTTTAGTCGATGTAAGTGTCAATTAAGCATAGGCCTTTGTGATCTT 1087
Query 1114 ATG 1116
|||
Sbjct 1088 ATG 1090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44184460803
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5