BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G31850.1

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933733 jgi|Araly1|933733|scaffold_401721.1                        244    2e-64


> Ahg933733 jgi|Araly1|933733|scaffold_401721.1
Length=346

 Score =  244 bits (132),  Expect = 2e-64
 Identities = 245/296 (83%), Gaps = 22/296 (7%)
 Strand=Plus/Plus

Query  10   GAGAGATGCCGGAGAATATTTGATGATGTTCCAAGGAGAAAGAGAAGCAGGAGGAACTCA  69
            ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | 
Sbjct  45   GAGAGATCCCGGAGAATATTTGATGACGTTCCAAGGAGAAAGAGAAGCAGGAGGAACCCC  104

Query  70   GTCACAGAGAGGAAG-A-CCCTGGATTGTCAAGCTTCAGCTTTGTCTTCCGCTGTTCCTA  127
            ||||||||||||| | | |||  || ||||| ||| || |     |||   | | | || 
Sbjct  105  GTCACAGAGAGGACGAAGCCC--GAATGTCAGGCTCCA-C-----CTT---C-G-T-CTC  150

Query  128  CTCCTGCTCCAACTTCAGCTCCAGCTTTTGTTGCAACTAGACTCAATGGTCTCCGTCAGG  187
            || |||||||| |  |  ||  |||||||||||||| ||||| || | ||||||||||||
Sbjct  151  CTGCTGCTCCAGC--C--CT--AGCTTTTGTTGCAATTAGACGCACTCGTCTCCGTCAGG  204

Query  188  ACGACGCTGGATTGTCTGGATCTAGCACTGGCTCCTGCTCCAGCCCCGACTCCAGCACCG  247
            |||||| |||| ||||||  |||||||| |||||||||||||||||||  ||||||||||
Sbjct  205  ACGACGTTGGAATGTCTGTCTCTAGCACCGGCTCCTGCTCCAGCCCCGGTTCCAGCACCG  264

Query  248  GATCCAACTCGGTTCCAGCTCCAGTTCCGTCACCGGCTCCGGCTGGATCCTGTTGT  303
            |||||||||||||||||||| || ||||| | | |||||||||||| ||| |||||
Sbjct  265  GATCCAACTCGGTTCCAGCTTCATTTCCGGCTCTGGCTCCGGCTGGCTCCCGTTGT  320



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12133477302


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5