BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31860.1
Length=2784
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933734 jgi|Araly1|933734|scaffold_401722.1 361 2e-98
Ahg900990 jgi|Araly1|900990|Al_scaffold_0004_1640 316 4e-85
> Ahg933734 jgi|Araly1|933734|scaffold_401722.1
Length=254
Score = 361 bits (195), Expect = 2e-98
Identities = 234/253 (92%), Gaps = 1/253 (0%)
Strand=Plus/Plus
Query 2428 CAAACAATCTACCAAAAGATTATGACGATCAAATAGAAATCTGGAGCTGGAGCTGAAGTT 2487
|||||||||||||||||||| ||||| |||||||| |||| ||| |||||||||||||||
Sbjct 1 CAAACAATCTACCAAAAGATAATGACAATCAAATACAAATTTGGTGCTGGAGCTGAAGTT 60
Query 2488 GGACCAGAAGTAGGAGACGGAGGTGGAACCAGATATCCTGGCATGGAGACAAATGGGGAC 2547
|| ||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
Sbjct 61 GGTGCAGAAGTAGGAGATGGAGGTGGAACCAGATATCCCGGCATGGAGACAAATGGGCTC 120
Query 2548 CTTATGCTTCTCCTTCCCCTTGGAATGTCAACAAATATCCTCCGATCACTCTCTTCGTCC 2607
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 121 CTCATGCTTCTCCTTCCCCTTGGAATGTCAACAAATATCCTCTGATCACTCTCTGCGTCC 180
Query 2608 ATCTTCGCGTACACTCGGGGATATTTGT-TTGCTTTCTCCGCAAGAATGGATGACGATGA 2666
||||||||||||||||||||| |||||| |||||||||||||||||| |||| |||||||
Sbjct 181 ATCTTCGCGTACACTCGGGGAAATTTGTATTGCTTTCTCCGCAAGAACGGATAACGATGA 240
Query 2667 GCCAATTGGTAGA 2679
||| |||||||||
Sbjct 241 GCCGATTGGTAGA 253
> Ahg900990 jgi|Araly1|900990|Al_scaffold_0004_1640
Length=1206
Score = 316 bits (171), Expect = 4e-85
Identities = 184/190 (97%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 332 AGAGAATGTCGAAAGAAGAATCAAGCAGATGGTTTAACGAGTTTTTACCTGCAATGGCTT 391
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 248 AGAGAATGTCGAAAGAAGAATCAAGCAGATGGTTTAACGAGGTTTTACCTGAAATGGCTT 307
Query 392 GTCTTCTTCTGAGATTCCCATCTCTCTTGGAATC-ACACTATCTAAATTCAGACAATCTC 450
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 308 GTCTTCTTCTGAGATTCCCATCTCTCTTGGAA-CTACACTATCTAAATTCAGACAATCTC 366
Query 451 ATCAATGGAACCAAAACCGGTCTTCGTGTCTTAGTCCCCAACAAAGCCGGCATTGTGTTC 510
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 367 ATCAATGGAACCAAAACCGGTCTTCGTGTCTTAGGCCCCAACAAAGCCGGCATTGTGTTT 426
Query 511 CTCAGCCAGG 520
||||||||||
Sbjct 427 CTCAGCCAGG 436
Score = 303 bits (164), Expect = 3e-81
Identities = 196/211 (93%), Gaps = 3/211 (1%)
Strand=Plus/Plus
Query 765 CTATTGCAGGAGCCTAATCAACACGGGA-AGAAATGAGCATCAAGAGAACAAGATAAAGT 823
||||| | |||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct 532 CTATT-CGGGAGCCTAATCAACACGGGACA-AAACGAGCATCAAGAGAACAAGATAAAGT 589
Query 824 GCATAATTCATTACTTCCAGAGGCTATCTTCAAGTATCTCTCCAGGGTTCGTCTCATTCG 883
||||||||||||||||||| |||||||||||| |||||||||| || || ||||||||||
Sbjct 590 GCATAATTCATTACTTCCAAAGGCTATCTTCATGTATCTCTCCTGGATTTGTCTCATTCG 649
Query 884 AACGAAAGATTCTCTCTTTAGAACAAGATTCTTCTACTCTTGATGAAGGGTTTTGGGGAA 943
||||||||||||||||||||||||||| ||||||| |||||||||||| |||||| |||
Sbjct 650 AACGAAAGATTCTCTCTTTAGAACAAGGTTCTTCTTGTCTTGATGAAGGCTTTTGGAGAA 709
Query 944 AATCTACTGTCAATCTCTGCCCTGTTGAGGT 974
|||||||||||||||||||||||||||||||
Sbjct 710 AATCTACTGTCAATCTCTGCCCTGTTGAGGT 740
Score = 270 bits (146), Expect = 3e-71
Identities = 166/176 (94%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 1654 AGGGAGACCAATAAGGCTCTATGTGGTTTCCTTCACGTCTGCAAGAATCAGAGCAACGGG 1713
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
Sbjct 1027 AGGGAGACCAATAAGGCTCTATGTGGTTTCCTTCACGTCTGCAAGAAGCAGGGCAACGCG 1086
Query 1714 CAGTGTATAGATCATGAAGATGGGGTCGGTGTCGTTACAGGGAATTGGGGATGTGGTGCT 1773
|| || ||||||||||||||||| |||||||| | |||||||||||||||||||||||||
Sbjct 1087 CAATGCATAGATCATGAAGATGGAGTCGGTGTTGCTACAGGGAATTGGGGATGTGGTGCT 1146
Query 1774 TATGGTGGAGATCCTGAGCTCAAGTCTCTTCTTCAATGGCTTGCGGTTTCACAGGT 1829
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1147 TATGGTGGAGATCCTGAGCTCAAGTCTCTTCTTCAGTGGCTTGCTGTTTCACAGGT 1202
Score = 209 bits (113), Expect = 7e-53
Identities = 119/122 (98%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 1231 CAGGAAGAGATTAGATTCATGATCAATCCAGAATTGATCGTTGGTATGCTCTTTTTACCA 1290
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 841 CAGGAAGAGATTAGATTTATGATCAATCCAGAATTGATCGTTGGTATGCTCTTCTTACCA 900
Query 1291 ACCATGGAAGTCACTGAAGCCATTGAAGTTGTTGGTGCAGAAAGATTCTCTCTTTACACA 1350
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 901 ACCATGGAAGTCACTGAAGCCATTGAAGTTGTTGGTGCAGAAAGATTCTCTCATTACACA 960
Query 1351 GG 1352
||
Sbjct 961 GG 962
Score = 189 bits (102), Expect = 1e-46
Identities = 106/108 (98%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 600 CAGGAACTTATAGGAGCTTTGCTTTCATGTTCTTTCTTCTGTTTGTTCCCTGTCGATGAT 659
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 433 CAGGAACTTATAGGAGCTTTGCTTTCATGTTCTTTCTTCTGTTTGTTTCCTGTCGATGAT 492
Query 660 AGAGGCTCAAATCATCTTCCAATCATCAATTTCGACAAACTATTCGGG 707
|||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 493 AGAGGCTCGAATCATCTTCCAATCATCAATTTCGACAAACTATTCGGG 540
Score = 172 bits (93), Expect = 1e-41
Identities = 103/108 (95%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 1049 AGGTTCGTACTTCTGGTTTGATCGAGGATCAAAGCGTAGAAGCTCTTGAAGTTGACTTTG 1108
|||||| ||||| |||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 737 AGGTTCATACTTATGGTTTGATCGAGGATCATAGCGTTGAAGCTCTTGAAGTTGACTTTG 796
Query 1109 CCAACAAGAACTTAGGAGGTGGCGCTCTTCGCAAGGGATGTGTCCAGG 1156
|||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 CCAATAAGAACTTAGGAGGTGGCGCTCTTCGCAAGGGATGTGTCCAGG 844
Score = 115 bits (62), Expect = 2e-24
Identities = 66/68 (97%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 1438 GATATTCATCTTCGTTTCGGTTTTCCGGTGACTACATTGATACAAAGGAAACAGATGTTT 1497
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 962 GATATTCATCTTCATTTCGGTTTTCTGGTGACTACATTGATACAAAGGAAACAGATGTTT 1021
Query 1498 TCGGAAGG 1505
||||||||
Sbjct 1022 TCGGAAGG 1029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105052895710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5