BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G31860.1 Length=2784 Score E Sequences producing significant alignments: (Bits) Value Ahg933734 jgi|Araly1|933734|scaffold_401722.1 361 2e-98 Ahg900990 jgi|Araly1|900990|Al_scaffold_0004_1640 316 4e-85 > Ahg933734 jgi|Araly1|933734|scaffold_401722.1 Length=254 Score = 361 bits (195), Expect = 2e-98 Identities = 234/253 (92%), Gaps = 1/253 (0%) Strand=Plus/Plus Query 2428 CAAACAATCTACCAAAAGATTATGACGATCAAATAGAAATCTGGAGCTGGAGCTGAAGTT 2487 |||||||||||||||||||| ||||| |||||||| |||| ||| ||||||||||||||| Sbjct 1 CAAACAATCTACCAAAAGATAATGACAATCAAATACAAATTTGGTGCTGGAGCTGAAGTT 60 Query 2488 GGACCAGAAGTAGGAGACGGAGGTGGAACCAGATATCCTGGCATGGAGACAAATGGGGAC 2547 || ||||||||||||| |||||||||||||||||||| |||||||||||||||||| | Sbjct 61 GGTGCAGAAGTAGGAGATGGAGGTGGAACCAGATATCCCGGCATGGAGACAAATGGGCTC 120 Query 2548 CTTATGCTTCTCCTTCCCCTTGGAATGTCAACAAATATCCTCCGATCACTCTCTTCGTCC 2607 || ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 121 CTCATGCTTCTCCTTCCCCTTGGAATGTCAACAAATATCCTCTGATCACTCTCTGCGTCC 180 Query 2608 ATCTTCGCGTACACTCGGGGATATTTGT-TTGCTTTCTCCGCAAGAATGGATGACGATGA 2666 ||||||||||||||||||||| |||||| |||||||||||||||||| |||| ||||||| Sbjct 181 ATCTTCGCGTACACTCGGGGAAATTTGTATTGCTTTCTCCGCAAGAACGGATAACGATGA 240 Query 2667 GCCAATTGGTAGA 2679 ||| ||||||||| Sbjct 241 GCCGATTGGTAGA 253 > Ahg900990 jgi|Araly1|900990|Al_scaffold_0004_1640 Length=1206 Score = 316 bits (171), Expect = 4e-85 Identities = 184/190 (97%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 332 AGAGAATGTCGAAAGAAGAATCAAGCAGATGGTTTAACGAGTTTTTACCTGCAATGGCTT 391 ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 248 AGAGAATGTCGAAAGAAGAATCAAGCAGATGGTTTAACGAGGTTTTACCTGAAATGGCTT 307 Query 392 GTCTTCTTCTGAGATTCCCATCTCTCTTGGAATC-ACACTATCTAAATTCAGACAATCTC 450 |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct 308 GTCTTCTTCTGAGATTCCCATCTCTCTTGGAA-CTACACTATCTAAATTCAGACAATCTC 366 Query 451 ATCAATGGAACCAAAACCGGTCTTCGTGTCTTAGTCCCCAACAAAGCCGGCATTGTGTTC 510 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 367 ATCAATGGAACCAAAACCGGTCTTCGTGTCTTAGGCCCCAACAAAGCCGGCATTGTGTTT 426 Query 511 CTCAGCCAGG 520 |||||||||| Sbjct 427 CTCAGCCAGG 436 Score = 303 bits (164), Expect = 3e-81 Identities = 196/211 (93%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 765 CTATTGCAGGAGCCTAATCAACACGGGA-AGAAATGAGCATCAAGAGAACAAGATAAAGT 823 ||||| | |||||||||||||||||||| | ||| ||||||||||||||||||||||||| Sbjct 532 CTATT-CGGGAGCCTAATCAACACGGGACA-AAACGAGCATCAAGAGAACAAGATAAAGT 589 Query 824 GCATAATTCATTACTTCCAGAGGCTATCTTCAAGTATCTCTCCAGGGTTCGTCTCATTCG 883 ||||||||||||||||||| |||||||||||| |||||||||| || || |||||||||| Sbjct 590 GCATAATTCATTACTTCCAAAGGCTATCTTCATGTATCTCTCCTGGATTTGTCTCATTCG 649 Query 884 AACGAAAGATTCTCTCTTTAGAACAAGATTCTTCTACTCTTGATGAAGGGTTTTGGGGAA 943 ||||||||||||||||||||||||||| ||||||| |||||||||||| |||||| ||| Sbjct 650 AACGAAAGATTCTCTCTTTAGAACAAGGTTCTTCTTGTCTTGATGAAGGCTTTTGGAGAA 709 Query 944 AATCTACTGTCAATCTCTGCCCTGTTGAGGT 974 ||||||||||||||||||||||||||||||| Sbjct 710 AATCTACTGTCAATCTCTGCCCTGTTGAGGT 740 Score = 270 bits (146), Expect = 3e-71 Identities = 166/176 (94%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 1654 AGGGAGACCAATAAGGCTCTATGTGGTTTCCTTCACGTCTGCAAGAATCAGAGCAACGGG 1713 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| | Sbjct 1027 AGGGAGACCAATAAGGCTCTATGTGGTTTCCTTCACGTCTGCAAGAAGCAGGGCAACGCG 1086 Query 1714 CAGTGTATAGATCATGAAGATGGGGTCGGTGTCGTTACAGGGAATTGGGGATGTGGTGCT 1773 || || ||||||||||||||||| |||||||| | ||||||||||||||||||||||||| Sbjct 1087 CAATGCATAGATCATGAAGATGGAGTCGGTGTTGCTACAGGGAATTGGGGATGTGGTGCT 1146 Query 1774 TATGGTGGAGATCCTGAGCTCAAGTCTCTTCTTCAATGGCTTGCGGTTTCACAGGT 1829 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 1147 TATGGTGGAGATCCTGAGCTCAAGTCTCTTCTTCAGTGGCTTGCTGTTTCACAGGT 1202 Score = 209 bits (113), Expect = 7e-53 Identities = 119/122 (98%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 1231 CAGGAAGAGATTAGATTCATGATCAATCCAGAATTGATCGTTGGTATGCTCTTTTTACCA 1290 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 841 CAGGAAGAGATTAGATTTATGATCAATCCAGAATTGATCGTTGGTATGCTCTTCTTACCA 900 Query 1291 ACCATGGAAGTCACTGAAGCCATTGAAGTTGTTGGTGCAGAAAGATTCTCTCTTTACACA 1350 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 901 ACCATGGAAGTCACTGAAGCCATTGAAGTTGTTGGTGCAGAAAGATTCTCTCATTACACA 960 Query 1351 GG 1352 || Sbjct 961 GG 962 Score = 189 bits (102), Expect = 1e-46 Identities = 106/108 (98%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 600 CAGGAACTTATAGGAGCTTTGCTTTCATGTTCTTTCTTCTGTTTGTTCCCTGTCGATGAT 659 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 433 CAGGAACTTATAGGAGCTTTGCTTTCATGTTCTTTCTTCTGTTTGTTTCCTGTCGATGAT 492 Query 660 AGAGGCTCAAATCATCTTCCAATCATCAATTTCGACAAACTATTCGGG 707 |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 493 AGAGGCTCGAATCATCTTCCAATCATCAATTTCGACAAACTATTCGGG 540 Score = 172 bits (93), Expect = 1e-41 Identities = 103/108 (95%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1049 AGGTTCGTACTTCTGGTTTGATCGAGGATCAAAGCGTAGAAGCTCTTGAAGTTGACTTTG 1108 |||||| ||||| |||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 737 AGGTTCATACTTATGGTTTGATCGAGGATCATAGCGTTGAAGCTCTTGAAGTTGACTTTG 796 Query 1109 CCAACAAGAACTTAGGAGGTGGCGCTCTTCGCAAGGGATGTGTCCAGG 1156 |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 797 CCAATAAGAACTTAGGAGGTGGCGCTCTTCGCAAGGGATGTGTCCAGG 844 Score = 115 bits (62), Expect = 2e-24 Identities = 66/68 (97%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 1438 GATATTCATCTTCGTTTCGGTTTTCCGGTGACTACATTGATACAAAGGAAACAGATGTTT 1497 ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 962 GATATTCATCTTCATTTCGGTTTTCTGGTGACTACATTGATACAAAGGAAACAGATGTTT 1021 Query 1498 TCGGAAGG 1505 |||||||| Sbjct 1022 TCGGAAGG 1029 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 105052895710 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5