BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31865.2
Length=1857
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933737 jgi|Araly1|933737|scaffold_401725.1 1893 0.0
Ahg900975 jgi|Araly1|900975|Al_scaffold_0004_1625 174 2e-42
> Ahg933737 jgi|Araly1|933737|scaffold_401725.1
Length=1609
Score = 1893 bits (1025), Expect = 0.0
Identities = 1152/1214 (95%), Gaps = 6/1214 (0%)
Strand=Plus/Plus
Query 50 TTTCAGGCAATAAGGATGGAACTGAGGGCAGATCTTAGGTCAATTCTTCAGTATTTGCCT 109
||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 6 TTTCAGGAAATAAGGATGGAACAGAGGACAGATCTTAGGTCAATTCTTCAGTATTTGCCT 65
Query 110 CTTGTGGCTCAGTCTTCATCACTAGTTTGGCCACCTTCTGTCGAAGAAGAGCTCCAAACA 169
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 66 CTTGTGGCTCAGTCTTCATCTCTAGTTTGGCCACCTTCTGTTGAAGAAGAGCTCCAAACA 125
Query 170 ATATCTAGAGGACCGAGTGAGTCAATGGTTAACTC-GGGAGAGGCTCTTGCCTTGCATAT 228
|| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 126 ATGTCTAGAGGACCGAGTGAGTCAATGGTTAACTCAGGG-GAGGCTCTTGCCTTGCATAT 184
Query 229 CACGAATATGCGGAAATCTCTCTCCTTGAATGCATCTGATCTCGCCCCTTATGCATTACA 288
|||| |||| | ||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 185 CACGGATATTCAAAAATCCCTCTCCTTGAATGCATCTGATCTCGCACCTTATGCGTTACA 244
Query 289 AGGGTATGGTCTTTTCTTTGACAAGAAAATTTCCAGAGAAGAGTCGGCAAACTTTTTTGG 348
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 245 AGGGTATGCTCTTTTCTTTGACAAGAAAATTTCCAGAGAAGAGTCGGCCAACTTTTTTGG 304
Query 349 TGAGGTGGTTCCTGCATTGTGCAGATTACTTCTCCAGTTACCTTCCATGTTAGAAAAACA 408
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 305 TGAGGTGGTTCCTGCATTGTGCAGATTACTTCTCCAGTTACCTTCCCTGTTAGAAAAGCA 364
Query 409 CTATCAGAAGGCAGACCATGTTCTTGATGGAGTTAAGTCCGGGCTTCGTCTATTAGGCCC 468
||||||||||||||| ||||||||||||||||||| ||| |||||||| |||||||||||
Sbjct 365 CTATCAGAAGGCAGATCATGTTCTTGATGGAGTTACGTCGGGGCTTCGCCTATTAGGCCC 424
Query 469 TCAAGAAGCTGGAATTGTGTTACTTAGCCAGGAGTTGATTGCAGCTCTTCTTGCGTGTTC 528
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 425 TCAAGAAGCTGGAATTGTGTTACTTAGCCAGGAGTTGATTGCAACTCTTCTTGCATGTTC 484
Query 529 CTTCTTTTGCTTGTTCCCTGAAGTTGACAGAAGCTTAAAGAATCTTCAAGGAATCAACTT 588
||||||||| ||||||||||||||||||||| ||||||| || |||||||||||||||||
Sbjct 485 CTTCTTTTGTTTGTTCCCTGAAGTTGACAGACGCTTAAATAAACTTCAAGGAATCAACTT 544
Query 589 TAG-TGGATTGTTTTCGTTTCCGTATATGCGTCACTGCACGAAGCAAGAAAACAAAATAA 647
| | |||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||
Sbjct 545 T-GATGGATTGTTTTCGTTTCCATATATGCGTGACTGCACAAAGCAAGAAAACAAAATAA 603
Query 648 AGTGCCTTATCCATTACTTTGGAAGAATATGTCGATGGATGCCCACCGGCTTTGTTTCAT 707
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 604 AGTGCCTTATCCATTACTTTGGAAGAATATGTCGATGTATGCCCACCGGCTTTGTTTCAT 663
Query 708 TTGAGAGGAAAATTCTTCCACTGGAATACCATCCTCACTTTGTTTCTTATCCCAAGGCTG 767
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 664 TTGAGAGGAAAATTCTTCCACTGGAATACCTTCCTCACTTTGTTTCTTATCCTGGGGCTG 723
Query 768 ATTCGTGGGCTAATTCTGTCACCCCACTTTGCTCCATTGAGATTCACACCTCGGGAGCTA 827
|||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 724 ATTCATGGGCTAATTCTGTCACCCCACTTTGCTCTATTGAGGTTCACACCTCGGGAGCTA 783
Query 828 TAGAAGATCAACCTTGTGAAGCTCTTGAAGTAGATTTTGCAGATGAGTATTTTGGAGGCC 887
||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 784 TAGAAGATCAACCCGGTGAAGCTCTTGAAGTGGATTTTGCAGATGAGTTTTTTGGAGGCC 843
Query 888 TTACTCTGAGTTATGATACTCTACAGGAAGAAATAAGGTTCGTGATCAACCCGGAACTTA 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 TTACTCTGAGTTATGATACTCTACAGGAAGAAATAAGGTTCGTGATCAACCCGGAACTTA 903
Query 948 TCGCTGGCATGATCTTTTTGCCTCGTATGGATGCAAATGAAGCAATTGAGATTGTTGGTG 1007
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 904 TCGCTGGCATGATCTTTTTGCCTCGTATGGATGCAAATGAAGCGATTGAGATTGTTGGTG 963
Query 1008 TTGAAAGATTTTCAG-GTTATACAGGGTATGGGCCTTCGTTCCAATATGCTGGTGATTAC 1066
||||||||||||| | |||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 964 TTGAAAGATTTTC-GCGTTATACAGGGTATGGACCTTCGTTCCAATATGCTGGCGATTAC 1022
Query 1067 ACAGACAACAAGGACTTAGACATTTTCAGGAGGCGAAAAACAAGAGTCATAGCTATAGAT 1126
|||||||| ||||| ||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1023 ACAGACAAGAAGGATTTAGACATTTTCAAGAGGCGAAAAACGAGAGTCATAGCTATAGAT 1082
Query 1127 GCCATGCCTGACCCAGGAATGGGACAGTACAAACTTGATGCCCTCATTCGAGAGGTTAAT 1186
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 GCCATGCCTGGCCCAGGAATGGGACAGTACAAACTTGATGCCCTCATTCGAGAGGTTAAC 1142
Query 1187 AAGGCTTTTAGCGGATACATGCATCAATGTAAATATAATATCGATGTTAAGCATGATCCT 1246
|||||||||||||||||||||||||||||||||||||| |||||||||| |||| | |||
Sbjct 1143 AAGGCTTTTAGCGGATACATGCATCAATGTAAATATAAAATCGATGTTATGCATCAGCCT 1202
Query 1247 GAGGCATCATCTTC 1260
||||||| ||||||
Sbjct 1203 GAGGCATTATCTTC 1216
Score = 641 bits (347), Expect = 0.0
Identities = 377/392 (96%), Gaps = 0/392 (0%)
Strand=Plus/Plus
Query 1292 CATGTTCCTCTTACATCAGATTCTGCGAGCCAAGTTATAGAAAGCTCTCATAGATGGTGT 1351
||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||
Sbjct 1218 CATGTTCCTCTTACATCAGATTCTGCGAGCCAAGTAATAGAAAGCTCTGATCGATGGTGT 1277
Query 1352 ATCGATCATGAAGAGAAAAAGATTGGTGTAGCTACAGGGAACTGGGGCTGCGGTGTGTTT 1411
|| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1278 ATTGATCATGAAGAGAAGAAGATTGGTGTAGCTACAGGGAACTGGGGATGCGGTGTGTTT 1337
Query 1412 GGAGGTGATCCAGAACTAAAGATCATGCTTCAGTGGCTTGCCATTTCACAGTCAGGAAGA 1471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 GGAGGTGATCCAGAACTAAAGATCATGCTTCAGTGGCTTGCCATTTCACAGTCAGGAAGA 1397
Query 1472 CCCTTCATGTCATACTATACCTTTGGCCTCCAAGCCTTACAAAATCTCAATCAGGTGATC 1531
||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||
Sbjct 1398 CCCTTCATGTCATACTACACCTTTGGCCTCCAAGCCCTGCAAAATCTCAATCAGGTGATC 1457
Query 1532 GAAATGGTCGCTTTACAAGAAATGACTGTAGGAGACCTATGGAAAAAACTAGTTGAGTAT 1591
|||| ||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1458 GAAAGGGTCGCTTTGCAAGAAATGACTGTAGGAGACCTTTGGAAAAAGCTAGTTGAGTAT 1517
Query 1592 TCTTCAGAGAGGCTCAGCAGAAGAACATGGCTTGGCTTCTTCTCGTGGCTCATGACCTCA 1651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1518 TCTTCAGAGAGGCTCAGCAGAAGAACATGGCTTGGCTTCTTCTCGTGGCTCATGACCTCA 1577
Query 1652 CTGTCTACCTAGAGTAAAAATTGAGTCAAAGT 1683
|||||||||||||| ||||||||||||| |||
Sbjct 1578 CTGTCTACCTAGAGGAAAAATTGAGTCAGAGT 1609
> Ahg900975 jgi|Araly1|900975|Al_scaffold_0004_1625
Length=618
Score = 174 bits (94), Expect = 2e-42
Identities = 114/124 (92%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 73 GAGGGCAGATCTTAGGTCAATTCTTCAGTATTTGCCTCTTGTGGCTCAGTCTTCATCACT 132
||||||| |||||||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 12 GAGGGCATATCTTAGGTCAATTCTTCAGTATTTGCCTCTTGTGGCTAACTCTTCATCTCT 71
Query 133 AGTTTGGCCACCTTCTGTCGAAGAAGAGCTCCAAACAATATCTAGAGGACCGAGTGAGTC 192
|||||||||||| |||| |||||||||||||||||||| || |||||||| ||||||||
Sbjct 72 AGTTTGGCCACCACCTGTTGAAGAAGAGCTCCAAACAATGTCCAGAGGACCAAGTGAGTC 131
Query 193 AATG 196
||||
Sbjct 132 AATG 135
Score = 132 bits (71), Expect = 1e-29
Identities = 83/88 (94%), Gaps = 3/88 (3%)
Strand=Plus/Plus
Query 1574 AAAAAACTAGTTGAGTATTCTTCAGAGAGGCTCAGCAGAAGAACATGGCTTGGCTTCTTC 1633
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 AAAAAGCTAGTTGAGTATTCTTCAGAGAGGCTCAGCAGAAGAACATGGCTTGGCTTCTTC 525
Query 1634 TCGTGGCTCAT--G-ACCTCACTGTCTA 1658
||||||||||| | || ||||||||||
Sbjct 526 TCGTGGCTCATAAGTACGTCACTGTCTA 553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69743238595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5