BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31870.1
Length=1734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482111 jgi|Araly1|482111|fgenesh2_kg.4__1171__AT2G31870.2 2514 0.0
> Ahg482111 jgi|Araly1|482111|fgenesh2_kg.4__1171__AT2G31870.2
Length=1825
Score = 2514 bits (1361), Expect = 0.0
Identities = 1639/1765 (93%), Gaps = 52/1765 (3%)
Strand=Plus/Plus
Query 1 GCGGCAGCAGAATCTTGTCGCAGAAGCGATTCGTAAACCTGTTTCAAAAGCAATTGAGAA 60
||||||||||||||||||||||||||||||||| | |||||||||||| |||| ||||
Sbjct 2 GCGGCAGCAGAATCTTGTCGCAGAAGCGATTCGCAGACCTGTTTCAAAGGCAAGTGAG-- 59
Query 61 CAGCTGTGAGATTAGAAAAATCGAAAAATGGAGAATCGCGAAGATCTTAACTCAATTCTT 120
| |||||| | |||||||||||||||||||||||||||||| ||||||
Sbjct 60 -A-----GAGATT------A---AAAAATGGAGAATCGCGAAGATCTTAACTCGATTCTT 104
Query 121 CCGTACCTTCCACTTGTAATTCGTTCGTCGTCGCTGTATTGGCCGCCGCGTGTGGTGGAG 180
|| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 105 CCATACCTTCCGCTTGTAATTCGTTCGTCGTCGCTGTATTGGCCACCGCGTGTGGTGGAG 164
Query 181 GCGTTAAAGGCAATGTCTGAAGGACCATCTCACAGCCAAGTTGACTCAGGAGAGGTTCTA 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 165 GCGTTAAAGGCAATGTCTGAAGGACCATCTCACAGCCGAGTTGACTCAGGAGAAGTTCTA 224
Query 241 CGGCAAGCTATTTTCGATATGAGACGATCCTTATCTTTCTCTACTCTCGAGCCATCTGCT 300
|||||||||||| ||||||||||||||| ||||| ||||| ||||||||||| ||||||
Sbjct 225 TGGCAAGCTATTTCCGATATGAGACGATCTTTATCCTTCTCAACTCTCGAGCCCTCTGCT 284
Query 301 TCTAATGGCTACGCAT-TTCTCTTTGACGAATTGATTGATGAGAAAGAATCAAAGAGATG 359
||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 TCTCATGGCTACGC-TCTTCTCTTTGACGAATTGATTGATGAGAAAGAATCAAAGAGATG 343
Query 360 GTTCGATGAGATTATCCCAGCATTGGCGAGCTTACTTCTACAGTTTCCATCTCTG-TTAG 418
||||||||||||||||||||||||||| || ||||| |||||||||||||||| | || |
Sbjct 344 GTTCGATGAGATTATCCCAGCATTGGCCAGGTTACTCCTACAGTTTCCATCTC-GATTGG 402
Query 419 AAGTGCATTTCCAAAATGCTGATAATATTGTTAGTGGAATCAAAACCGGTCTTCGTTTGT 478
|||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||
Sbjct 403 AAGTGCATTTCCAAAATGCTGATAATATCGTTAGAGGAATCAAAACAGGTCTCCGTTTGT 462
Query 479 TAAATTCCCAACAAGCTGGCATTGTTTTCCTCAGCCAGGAGTTGATTGGAGCTCTTCTTG 538
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 463 TAGATTCCCAACAAGCTGGCATTGTTTTCCTTAGCCAGGAGTTGATTGGAGCTCTTCTTG 522
Query 539 CATGCTCTTTCTTTTGTTTGTTTCCGGATGATAATAGAGGTGCAAAACACCTTCCAGTCA 598
| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 523 CCTGCTCTTTCTTTTGTTTGTTTCCTGATGATAATAGAGGTGCAAAACACCTCCCAGTCA 582
Query 599 TCAACTTTGATCATTTGTTTGCAAGCCTTTAT-ATAAGTTATAGTCAAAGTCAAGAAAGC 657
|||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||
Sbjct 583 TCAACTTTGATCATTTGTTTGCGAGCCTTTATGA-AAGTTATAGTCAAAGTCAAGAAAGC 641
Query 658 AAGATAAGATGTATTATGCATTACTTTGAAAGGTTTTGCTCCTGCGTGCCTATTGGTATT 717
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 642 AAGATAAGGTGTATTATGCATTACTTTGAAAGGTTTTGCTCCTGTGTGCCTATTGGTACT 701
Query 718 GTTTCATTTGAACGCAAGATTA--CC-GCTG----C-----T--C-CT---GATGCT--- 756
||||||||||||||||||||| || |||| | | | || | ||||
Sbjct 702 GTTTCATTTGAACGCAAGATTCTTCCAGCTGAATACCACAATTTCTCTACCGCTGCTCCC 761
Query 757 GA---T--TT-CTGGAGCAAGTCTGACGTTTCTCTTTGTGCATTTAAGGTTCACTCTTTT 810
|| | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 GACGCTGATTTCTGGAGCAAGTCTGACGTTTCTCTTTGTGCATTTAAGGTTCACTCTTTT 821
Query 811 GGGTTAATTGAAGATCAACCTGACAATGCTCTCGAAGTGGACTTTGCAAACAAGTATCTC 870
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 822 GGGTTAATTGAAGATCAACCTGACAATGCTCTGGAAGTGGACTTTGCGAACAAGTATCTC 881
Query 871 GGAGGTGGTTCCCTAAGTAGAGGGTGCGTGCAGGAAGAGATACGCTTCATGATTAACCCT 930
|||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 882 GGAGGTGGTTCCCTAAGTAGGGGGTGCGTACAGGAAGAGATACGTTTCATGATTAACCCT 941
Query 931 GAATTAATCGCTGGCATGCTTTTCTTGCCTCGGATGGATGACAATGAAGCTATAGAAATA 990
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 942 GAATTAATCGCTGGCATGCTTTTCTTGCCTCGCATGGATGACAATGAAGCTATAGAAATA 1001
Query 991 GTTGGTGCGGAAAGATTTTCATGTTACACAGGGTATGCATCTTCGTTTCGGTTTGCTGGT 1050
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1002 GTTGGTGCGGAAAGATTTTCATGCTACACAGGGTATGCATCTTCGTTTCGGTTTGCTGGT 1061
Query 1051 GAGTACATTGACAAAAAGGCAATGGATCCTTTCAAAAGGCGAAGAACCAGAATTGTTGCA 1110
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 GAGTACATTGACAATAAGGCAATGGATCCTTTCAAAAGGCGAAGAACCAGAATTGTTGCA 1121
Query 1111 ATTGATGCATTATGTACACCGAAGATGAGACACTTTAAAGATATATGTCTTTTAAGGGAA 1170
||||||||||||||| | |||||||||||||| |||||||||||||| |||||| |||||
Sbjct 1122 ATTGATGCATTATGTGCCCCGAAGATGAGACATTTTAAAGATATATGCCTTTTACGGGAA 1181
Query 1171 ATTAATAAGGCACTATGTGGCTTTTTAAATTGTAGCAAGGCTTGGGAGCACCAGAATATA 1230
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1182 ATTAATAAGGCACTATGTGGCTTTTTAAATTGTAGCAAGTCTTGGCAGCACCAGAATATA 1241
Query 1231 TTCATGGATGAAGGAGATAATGAAATTCAGCTTGTCC-GAAACGGCAGAGATTCTGGTCT 1289
|||| |||||||||||||| ||||||||||||| || |||||| |||||||||||||||
Sbjct 1242 CTCATAGATGAAGGAGATAAAGAAATTCAGCTTG-CCAGAAACGACAGAGATTCTGGTCT 1300
Query 1290 TCTGCGTACAGAAACTACTGCGTCACACCGAACTCCACTAAATGATGTTGAGATGAATAG 1349
||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||
Sbjct 1301 TCTGCGTACAGAAACTACTGCGTTACACGGAACTCCACTAAATGATGTCGAGATGAATAG 1360
Query 1350 AGAAAAGCCTGCTAACAATCTTATCAGAGATTTTTATGTGGAAGGAGTTGATAACGAGGA 1409
|||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 1361 AGAAAAGCCTGCTAACAATCTTATCAGAGATTTTTATGTGGAAGGAATTCATTGCGAGGA 1420
Query 1410 TCATGAAGATGATGGTGTCGCGACAGGGAATTGGGGATGTGGTGTTTTTGGAGGAGACCC 1469
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1421 TAATGAAGATGATGGTGTCGCGACAGGGAATTGGGGATGCGGTGTTTTTGGAGGAGACCC 1480
Query 1470 AGAGCTAAAGGCTACGATACAATGGCTTGCTGCTTCCCAGACTCGAAGACCATTTATATC 1529
|||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1481 AGAGCTTAAGGCTACGATCCAATGGCTAGCTGCTTCCCAGACTCGAAGACCATTTATATC 1540
Query 1530 ATATTACACCTTTGGAGTAGAGGCACTCCGAAACCTAGATCAGGTGACGAAGTGGATTCT 1589
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1541 ATATTACACCTTTGGAGTAGAGGCACTCCAAAACCTAGATCAGGTGACCAAGTGGATTCT 1600
Query 1590 TTCCCATAAATGGACTGTTGGAGATCTGTGGAACATGATGTTAGAATATTCTGCTCAAAG 1649
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1601 TTCCCATAAATGGACTGTTGGAGATCTGTGGAACATGATGCTAGAATATTCTGCTCAAAG 1660
Query 1650 GCTCTACAAGCAAACCAGTGTTGGCTTCTTTTCTTGGCTACTTCCATCTCTAGCTACCAC 1709
||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1661 GCTCTACAAGCAAACCAATCTTGGCTTCTTTTCGTGGCTACTTCCATCTCTAGCTACCAC 1720
Query 1710 CAACAAAGCTATCCAGCCGCCTTGA 1734
|||||||||||||||||| ||||||
Sbjct 1721 CAACAAAGCTATCCAGCCTCCTTGA 1745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65058138460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5