BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31880.1
Length=2084
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482113 jgi|Araly1|482113|fgenesh2_kg.4__1173__AT2G31880.1 3356 0.0
> Ahg482113 jgi|Araly1|482113|fgenesh2_kg.4__1173__AT2G31880.1
Length=2081
Score = 3356 bits (1817), Expect = 0.0
Identities = 1996/2084 (96%), Gaps = 6/2084 (0%)
Strand=Plus/Plus
Query 1 ACAAGAAGAAACTTTCTCTAATTAAAATGGCTGTTCCCACGGGAAGCG-CCA-Atc-tct 57
||||||||||| ||||||||||||||||||||||||||||||||| || ||| || |||
Sbjct 1 ACAAGAAGAAAGTTTCTCTAATTAAAATGGCTGTTCCCACGGGAAACGCCCATCTCTTCT 60
Query 58 ttctccggcctctcatcctcgccgttctctcctttcttcttctctcttcattcgtctcct 117
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 TTCTCCCGCCTCTCATCCTCGCCGTTCTCTCCTTTCTTCTTCTCTCTTCATTCGTCTCTT 120
Query 118 ctGTTGAGTGGCTCGATATCGATTCCTCAGATCTCAAAGCTCTTCAGGTCATCGAAACAG 177
| ||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 121 CCGTTGAGTGGCTCGATCTCGATTCATCAGATCTCAAAGCTCTTCAGATCATCGAAACAG 180
Query 178 AGCTCGGAGTCAACAGTCAACGTTCTTCGGCCAGTGATGTCAACCCTTGCGGTCGCCGAG 237
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 AGCTCGGAGTCAACAGTCAACGTTCTTCCTCCAGTGATGTCAACCCTTGCGGTCGCCGAG 240
Query 238 GAGTTTTCTGCGAGAGACGGCACTCTGCCACCACCGGAGAATACGTTCTCCGTGTCACGA 297
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGTTTTCTGCGAGAGACGGCGCTCTGCCACCACCGGAGAATACGTTCTCCGTGTCACGA 300
Query 298 GGCTCGTCTACCGATCCAGGAGCTTGACGGGGACTATCTCTCCGGTCATCGGAATGTTGT 357
||||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 301 GGCTCGTTTACCGATCCAGGAGCTTGACGGGAACTATCTCTCCGGTGATTGGAATGTTGT 360
Query 358 CGGAGCTCAAGGAACTTACTTTGTCTAATAACCAGTTGGTCAACGCTGTTCCGGTGGATA 417
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 CGGAGCTCAAGGAACTTACTTTGTCTAATAACCAGCTGGTCAACGCTGTTCCGGTGGATA 420
Query 418 TCTTAAGCTGTAAGCAACTTGAAGTTCTTGATCTTCGGAAAAATAGATTTTCCGGTCAGA 477
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 421 TCTTGAGCTGTAAGCAACTTGAAGTTCTTGATCTTCGGAAAAATAGATTTTCAGGTCAAA 480
Query 478 TTCCGGGAAACTTTTCTAGTTTGAGCCGTCTTCGAATCCTTGATCTCTCTTCGAACAAGT 537
|||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 481 TTCCAGGAAACTTTTCTAGTTTGAGCCGTCTGCGAATCCTTGATCTTTCTTCGAACAAAT 540
Query 538 TATCCGGGAACTTGAATTTCTTGAAGAATCTACGCAATCTGGAGAATCTCTCTGTTGCAA 597
| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 541 TCTCCGGGAACTTGAATTTCTTGAAGAATCTACGAAACCTGGAGAATCTCTCTGTTGCAA 600
Query 598 ACAATCTCTTCTCAGGCAAAATCCCGGAACAAATTGTGTCGTTCCACAATCTCCGGTTCT 657
|||||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 601 ACAATCTCTTCTCAGGCAAAATCCCGGAACCAAGTGCATCGTTCCACAATCTCCGGTTCT 660
Query 658 TTGATTTCTCCGGAAACCGGTATTTGGAAGGTCCGGCTCCGGTTATGAGCAGTATCAAGC 717
|||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 661 TTGATTTCTCCGGAAACCGGTATTTGGAAGGTCCGGTTCCGGTTATGAGCAATAACAAGC 720
Query 718 TTCAGACATCTCCACATCAAACAAGACACATTCTTGCTGAAACTCCAACTTCAAGTCCCA 777
|||||||||||||||| |||||||||||||||||||||||||||||| |||||| | |||
Sbjct 721 TTCAGACATCTCCACACCAAACAAGACACATTCTTGCTGAAACTCCATCTTCAAATTCCA 780
Query 778 CGAACAAACCCAACAACAGCACTACATCAAAAGCTCCAAAGGGAGCTCCAAAACCAGGGA 837
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 781 CGAAGAAACCTAACAACAGCACTACATCAAAAGCTCCAAAGGGAGCTCCAAAACCAGAGA 840
Query 838 AGTTgaagaagaagaagaagaagagcaagaagaagaaagTAGCGGCATGGATCTTAGGGT 897
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGTT---GAAGAAGAAGAAGAAGAGCAAGAAGAAGAAAGTAGCGGCATGGATCTTAGGGT 897
Query 898 TTGTCGTTGGAGCCATAGGAGGAACAATCTCTGGGTTTGTCTTCTCGGTGTTGTTCAAAT 957
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 898 TTGTCGTTGGAGCCATAGGCGGAACAATCTCTGGGTTTGTCTTCTCGGTGATGTTCAAAT 957
Query 958 TGATTATTCAAGCAATAAGAGGATCAGAAAAACCACCAGGTCCTTCCATATTCAGCCCAT 1017
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 958 TGATTATTCAAGCAATAAGAGGATCAGGAAAACCATCAGGTCCTTCCATATTCAGCCCAT 1017
Query 1018 TGATCAAGAAAGCTGAAGATTTAGCTTTCTTGGAGAATGAAGAAGCGTTAGCTTCTCTGG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TGATCAAGAAAGCTGAAGATTTAGCTTTCTTGGAGAATGAAGAAGCGTTAGCTTCTCTGG 1077
Query 1078 AGATCATAGGAAGAGGAGGTTGTGGAGAAGTTTTCAAAGCTGAACTACCAGGAAGCAATG 1137
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1078 AGATCATAGGAAGAGGAGGTTGTGGAGAAGTCTTCAAAGCTGAACTACCAGGAAGCAACG 1137
Query 1138 GGAAGATCATAGCTGTGAAGAAAGTGATCCAACCGCCTAAAGACGCCGATGAACTAACAG 1197
| |||||||| || || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1138 GCAAGATCATCGCAGTAAAGAAAGTGATCCAACCGCCTAAAGACGCCGACGAACTAACAG 1197
Query 1198 ATGAAGATTCCAAGTTTCTGAACAAGAAAATGAGGCAAATTAGATCCGAGATCAACACAG 1257
||||||||||||||||| |||||||||||||||| ||||| ||||||||||||| |||||
Sbjct 1198 ATGAAGATTCCAAGTTTATGAACAAGAAAATGAGACAAATCAGATCCGAGATCAGCACAG 1257
Query 1258 TCGGCCATATCCGGCACCGGAATCTTCTCCCATTGTTAGCACACGTGTCAAGACCCGAGT 1317
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1258 TCGGCCAAATCCGGCACCGGAATCTTCTCCCATTGTTAGCACATGTGTCAAGACCCGAGT 1317
Query 1318 GCCACTACCTCGTTTACGAGTACATGGAAAAGGGGAGTTTGCAAGATATATTGACTGACG 1377
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1318 GCCACTACCTCGTTTACGAGTACATGGAGAAGGGGAGTTTGCAAGATATATTGACTGATG 1377
Query 1378 TACAAGCTGGAAATCAAGAACTAATGTGGCCAGCGAGGCACAAGATTGCTTTAGGTATAG 1437
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 TACAAGCTGGAAACCAAGAGCTAATGTGGCCAGCGAGGCACAAGATTGCTTTAGGTATAG 1437
Query 1438 CTGCAGGGCTTGAGTACCTTCACATGGATCATAACCCACGAATCATTCACAGAGACTTAA 1497
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 CCGCAGGGCTTGAGTACCTTCACATGGATCATAACCCACGAATCATTCACAGAGACTTAA 1497
Query 1498 AGCCAGCCAATGTTCTTCTTGATGATGACATGGAAGCCAGAATTTCAGATTTCGGACTGG 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 AGCCAGCCAATGTTCTTCTTGATGATGACATGGAAGCCAGAATTTCAGATTTCGGACTGG 1557
Query 1558 CAAAGGCAATGCCAGATGCAGTCACACATATTACAACCTCGCATGTTGCAGGTACTGTGG 1617
|||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1558 CAAAGGTAATGCCAGATGCGGTCACACATATTACAACCTCGAATGTTGCAGGTACTGTGG 1617
Query 1618 GATACATAGCACCAGAGTTTTATCAAACCCACAAGTTCACAGATAAATGTGATATCTATA 1677
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1618 GATACATAGCACCAGAGTTTTATCAAACTCACAAGTTCACAGATAAATGTGATATCTATA 1677
Query 1678 GTTTTGGAGTGATTCTTGGGATTCTGGTGATTGGGAAGCTTCCTTCAGATGAGTTTTTTC 1737
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1678 GTTTTGGAGTGATTCTTGGGATTCTGGTAATTGGGAAGCTTCCTTCAGATGAGTTTTTTC 1737
Query 1738 AGCATACTGACGAGATGAGTCTGATAAAGTGGATGAGGAACATAATAACATCGGAAAATC 1797
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 AGCATACCGACGAGATGAGTCTGATAAAGTGGATGAGGAACATAATAACATCGGAAAATC 1797
Query 1798 CTAGCCTTGCGATTGATCCGAAGTTGATGGATCAAGGATTCGATGAACAGATGCTTCTGG 1857
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1798 CTAGCCTTGCGATTGATCCGAAGTTGATGGACCAAGGATTCGATGAACAGATGCTTCTGG 1857
Query 1858 TTCTGAAGATCGCCTGTTACTGTACTTTGGATGATCCAAAACAGAGGCCGAACAGTAAAG 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1858 TTCTGAAGATCGCCTGTTACTGTACTTTGGATGATCCAAAACAGAGGCCGAACAGCAAAG 1917
Query 1918 ATGTCAGGACCATGTTGTCCCAGATCAAGCACTAGTGTTTCAATATGTATTGTTTGCTTC 1977
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1918 ATGTCAGGACTATGTTGTCCCAGATCAAGCACTAGTGTTTCAACATGTATTGTTTGCTTC 1977
Query 1978 TATCTATATTTCCTAGATTCCTGTTGCATACGAAATAACTATGAACACAATCTTGGCAGA 2037
||| || ||| |||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1978 TATGAATGTTTTCTAGATTCCTGTTGCATAAGAAATAACTGTGAACACAATCTTGGCAGA 2037
Query 2038 AATTTGTAATGGCGACTGTAAAATTTAAATGGATTTCAATTATG 2081
||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 2038 AATTTGTAATGAAGACTGTATAATTTAAATGGATTTCAATTATG 2081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78389724210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5