BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31890.1
Length=2668
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933740 jgi|Araly1|933740|scaffold_401728.1 3216 0.0
Ahg482113 jgi|Araly1|482113|fgenesh2_kg.4__1173__AT2G31880.1 789 0.0
> Ahg933740 jgi|Araly1|933740|scaffold_401728.1
Length=2048
Score = 3216 bits (1741), Expect = 0.0
Identities = 1951/2053 (95%), Gaps = 12/2053 (1%)
Strand=Plus/Plus
Query 36 TTCTCAGATAGAAGAAGATGGAGTGTGTAGTTCCATTCCGGCGATGCTTCTGTCTCAATC 95
||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 4 TTCTCCGATAGAAGAAGATGGAGTGTGTAGTTCCATTCCGGCGGTGCTTCTCTCTCAATC 63
Query 96 CGCCGGAGACACGCCACCGTATCGTTAACCACAACCACCGAAATCTCCATATTTCTCTCT 155
||||||||| ||||||||| ||| ||||||||| | ||| |||||||| |||||||||
Sbjct 64 CGCCGGAGATACGCCACCGCATCTTTAACCACAGTCGCCGCTATCTCCATCTTTCTCTCT 123
Query 156 CCTCCTCCTCTTTCGCATCAGGGATTTTGCCTCTTTCTAATAAGAAGTATCGATTTGTTG 215
|||| |||||||||||||||||| ||| |||| | || |||||||||||||||| |||
Sbjct 124 CCTCATCCTCTTTCGCATCAGGGCTTTGGCCTGTCGCTGATAAGAAGTATCGATTACTTG 183
Query 216 GTCCTCTAGCACAGAGGAGTTCCTTGCATCGCCGTACGGACTCTCTCAAGCACCTTCCTT 275
|||| |||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||
Sbjct 184 GTCCACTAGCACAGAGGAGTTCCTTGCATAGCCGTTCGGGCTCTCTCAAGCACCTTCCTT 243
Query 276 TTTCCGTGAATGCGTCTGTGATTGGTAACTCGGAGGAAGAAGTGGAAGAAGAGGATGATG 335
||||||||||| ||||||||||||||||||| ||||||||| | || || | ||||
Sbjct 244 TTTCCGTGAATTCGTCTGTGATTGGTAACTCTGAGGAAGAA---G-AG--GA-G--GATG 294
Query 336 ATGGGGACTGGGAAGCAGAGTTTCTCGGGGAGATTGATCCGTTGGATATTCAACCTCCGA 395
||| ||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct 295 ATGCGGACTGGGAGGCAGAATTTCTTGGGGAGATTGATCCATTGGATATTCAACCTCCGA 354
Query 396 AGAAGAGGAAAAAGCAGAAGAATTCGAAAGCGCTTGAGGACACTGAAGGGATGGATTGGT 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 AGAAGAGGAAAAAGCAGAAGAATTCGAAAGCGCTTGAGGACACTGAAGGGATGGATTGGT 414
Query 456 GTGTAAGGGCAAGGAAAATTGCACTTAAATCGATTGAGGCAAGAGGGTTATCTTCTAGAA 515
|||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 415 GTGTAAGGGCAAGGAAGATTGCACTTAAATCGATTGAGGCCAGAGGGTTGTCTTCTAGAA 474
Query 516 TGGCGGAGGTGATGCCATTgaagaagaagaaaaagaaaaagagcaagaaagtcattgtaa 575
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 475 TGGCGGAGATGATGCCATTGAAGAAGAAGAAAAAGAAAAAGAGCAAGAAAGTAATTGTAA 534
Query 576 agaaagacaaggtcaaaagtaaaagTATTCCAGAAGATGATTTTGATACCGAGGACGAAG 635
||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 535 AGAAAGAAAAGGTCAAAAGTAGAAGTATTCTTGAAGATGATTTTGATACCGAGGACGAAG 594
Query 636 ATTTGGATTTTGAAGATGGATTTGTGGAGGATAAGATGGGGGATCTACGGAAGAGAGTTA 695
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 595 ATTTGGATTTTGAAGATGGATTGGTGGAGGATAAGATGGGGGATCTGCGGAAGAGAGTTA 654
Query 696 GCTCATTAGCTGGTGGAATGTTTGAGGAAAAGAAGGAGAAGATGAAGGAGCAATTAGCTC 755
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 655 GCTCATTAGCTGGTGGAATGTTTGAGGAAAAGAAGGAGAAGATGAAGGAACAATTAGCTC 714
Query 756 AGAGGCTATCCCAGTTTTCAGGACCTTCTGATCGTATGAAGGAAATCAACCTGAACAAAG 815
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 715 AGAGGCTATCCCAATTTTCAGGACCTTCTGATCGTATGAAGGAAGTCAACCTGAACAAAG 774
Query 816 CTATAATAGAAGCACAGACTGCTGAAGAGGTATTGGAAGTAACTGCTGAGACAATCATGG 875
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 775 CTATAATAGAAGCACAGACTGCTGAAGAGGTATTGGAAGTAACAGCTGAGACAATAATGG 834
Query 876 CTGTTGCCAAAGGTTTAAGTCCATCACCTTTGTCTCCTTTAAATATTGCTACTGCACTTC 935
|||| |||||||||||||||||||| |||||||||||| |||| |||||||||||||| |
Sbjct 835 CTGTCGCCAAAGGTTTAAGTCCATCGCCTTTGTCTCCTCTAAACATTGCTACTGCACTCC 894
Query 936 ACCGAATTGCCAAGAATATGGAGAAAGTTTCAATGATGAGAACTCGTAGGCTTGCATTTG 995
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 895 ACCGAATTGCTAAGAATATGGAGAAAGTTTCGATGATGAGAACTCGTAGGCTTGCATTTG 954
Query 996 CTCGGCAAAGAGAGATGTCAATGCTTGTTGCTCTTGCAATGACATGTCTACCAGAATGTT 1055
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 955 CTCGGCAAAGAGAGATGTCAATGCTTGTTGCTCTTGCAATGACATGTCTACCGGAATTTT 1014
Query 1056 CAGCTCAAGGCATCTCAAATATTTCTTGGGCATTATCCAAAATTGGAGGTGAATTGCTAT 1115
||||||||||||||||||||||||||||||| || |||||||| || ||||||||||| |
Sbjct 1015 CAGCTCAAGGCATCTCAAATATTTCTTGGGCCTTGTCCAAAATCGGGGGTGAATTGCTTT 1074
Query 1116 ATTTGACAGAGATGGATAGGGTTGCAGAAGTTGCCACATCAAAGG-TGGGTGAGTTCAAT 1174
||||||| ||||||||||| ||||||||||| ||||||||||||| |||| |||||||||
Sbjct 1075 ATTTGACTGAGATGGATAGAGTTGCAGAAGTAGCCACATCAAAGGTTGGG-GAGTTCAAT 1133
Query 1175 TCTCAGAATGTTGCTAATATTGCTGGGGCGTTTGCTTCCATGCGGCATTCTGCTCCAGAA 1234
||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1134 TCTCAAAATGTTGCTAACATTGCAGGGGCGTTTGCTTCCATGCGGCATTCTGCTCCAGAA 1193
Query 1235 CTCTTTGCTGAGTTGTCAAAGAGGGCATCTACTATTATCAATACCTTTAAGGGTCAAGAG 1294
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1194 CTCTTTGCTGAGTTGTCAAAGAGGGCATCTACTATTATCATTACCTTTAAGGGCCAAGAG 1253
Query 1295 ATTGCTCAACTATTGTGGTCATTTGCCTCACTTTATGAGCCAGCTGATCCTTTGCTTGAA 1354
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 ATTGCTCAACTATTGTGGGCATTTGCCTCACTTTATGAGCCAGCTGATCCTTTGCTTGAA 1313
Query 1355 TCTTTGGATAGTGCATTCAAAAGCAGTGACCAGTTCAAGTGTTACTTGACGAAAGAAATA 1414
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1314 TCTTTGGATAGTGCTTTCAAAAGCAGTGACCAGTTCAAGTGTTACTTGACAAAAGAAATA 1373
Query 1415 ACAAACTCTGATGAAGTAGTGGATGCTGAAGTAAGCGATGATGTTTCAAGATCTCCAGCA 1474
||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||
Sbjct 1374 ACAAACTCTGATGAAGTAGTGGATGTTGAAGTAAGCGATGATGCTTCAGGATCTCCAGCA 1433
Query 1475 CTTAGCTTTAACAGGGACCAGCTTGGAAACATAGCATGGTCTTATGCTGTTCTTGGGCAA 1534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 CTTAGCTTTAACAGGGACCAGCTTGGAAACATAGCATGGTCTTATGCTGTTCTTGGGCAA 1493
Query 1535 GTGGAGCGACCTTTCTTTGCCAATATATGGAATACTTTAACCACCTTGGAGGAGCAAAGG 1594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 GTGGAGCGACCTTTCTTTGCCAATATATGGAATACTTTAACCACCTTGGAGGAGCAAAGG 1553
Query 1595 CTTTCAGAACAGTATAGGGAAGATGTCATGTTTGCTTCTCAGGTGTATCTTGTGAATCAG 1654
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1554 CTTTCAGAACAGTATAGGGAAGATGTCATGTTTGCTTCTCAGGTCTATCTTGTGAATCAG 1613
Query 1655 TGCTTGAAGCTTGAGTGCCCCCACCTTCAGTTGTCACTTTGTCAAGAACTCGAAGAAAAA 1714
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1614 TGCTTGAAGCTTGAGTGCCCCCACCTTCAGTTGTCACTTTGTCATGAACTCGAAGAAAAA 1673
Query 1715 ATAAGCCGCGCAGGAAAAACCAAAAGATTCAATCAGAAAATAACCTCATCGTTTCAGAAA 1774
|||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 1674 ATAAGCCGTGCAGGAAAAACCAAAAGATTCAATCAAAAAATAACCTCGTCTTTTCAGAAA 1733
Query 1775 GAAGTTGGACGCCTTCTTATAAGTACAGGGCTTGATTGGGCTAAAGAACATGATGTGGAT 1834
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 GAAGTTGGACGCCTTCTAATAAGTACAGGGCTTGATTGGGCTAAAGAACATGATGTGGAT 1793
Query 1835 GGCTACACCGTGGATGTTGCTCTGGTCGAGAAGAAAGTTGCTTTAGAAATCGACGGGCCA 1894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 GGCTACACCGTGGATGTTGCTCTGGTCGAGAAGAAAGTTGCTTTAGAAATCGACGGGCCA 1853
Query 1895 ACTCATTTTTCAAGAAACTCTGGACTACCATTAGGGCATACAATGCTGAAGCGGCGATAT 1954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1854 ACTCATTTTTCAAGAAACTCTGGACTACCATTAGGGCATACAATGCTGAAGCGGCGATAT 1913
Query 1955 GTTGCTGCTGCTGGATGGAAAGTGGTATCTCTGTCTCTTCAAGAGTGGGAAGAACATGAA 2014
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1914 GTTGCCGCTGCTGGATGGAAAGTGGTATCTTTGTCTCTTCAAGAGTGGGAAGAACATGAA 1973
Query 2015 GGCAGTCATGAACAGCTAGAATATTTGAGGGAGATTCTCACCGGCTGCATATAGAGAAGA 2074
||||| || ||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1974 GGCAGCCACGAACAGCTAGAATATTTGAGGGAGATTCTCAACGGCTGCATATAAAGAAGA 2033
Query 2075 CAAGTAACCAAAC 2087
|| ||||| ||||
Sbjct 2034 CA-GTAACGAAAC 2045
> Ahg482113 jgi|Araly1|482113|fgenesh2_kg.4__1173__AT2G31880.1
Length=2081
Score = 789 bits (427), Expect = 0.0
Identities = 459/475 (97%), Gaps = 0/475 (0%)
Strand=Plus/Minus
Query 2194 CATAATTGAAATCCATTTAAATTTTACAGTCGCCATTACAAATTTCTGCCAAGATTGTGT 2253
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 2081 CATAATTGAAATCCATTTAAATTATACAGTCTTCATTACAAATTTCTGCCAAGATTGTGT 2022
Query 2254 TCATAGTTATTTCGTATGCAACAGGAATCTAGGAAATATAGATAGAAGCAAACAATACAT 2313
||| ||||||||| |||||||||||||||||| ||| || |||||||||||||||||||
Sbjct 2021 TCACAGTTATTTCTTATGCAACAGGAATCTAGAAAACATTCATAGAAGCAAACAATACAT 1962
Query 2314 ATTGAAACACTAGTGCTTGATCTGGGACAACATGGTCCTGACATCTTTACTGTTCGGCCT 2373
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1961 GTTGAAACACTAGTGCTTGATCTGGGACAACATAGTCCTGACATCTTTGCTGTTCGGCCT 1902
Query 2374 CTGTTTTGGATCATCCAAAGTACAGTAACAGGCGATCTTCAGAACCAGAAGCATCTGTTC 2433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1901 CTGTTTTGGATCATCCAAAGTACAGTAACAGGCGATCTTCAGAACCAGAAGCATCTGTTC 1842
Query 2434 ATCGAATCCTTGATCCATCAACTTCGGATCAATCGCAAGGCTAGGATTTTCCGATGTTAT 2493
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1841 ATCGAATCCTTGGTCCATCAACTTCGGATCAATCGCAAGGCTAGGATTTTCCGATGTTAT 1782
Query 2494 TATGTTCCTCATCCACTTTATCAGACTCATCTCGTCAGTATGCTGAAAAAACTCATCTGA 2553
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1781 TATGTTCCTCATCCACTTTATCAGACTCATCTCGTCGGTATGCTGAAAAAACTCATCTGA 1722
Query 2554 AGGAAGCTTCCCAATCACCAGAATCCCAAGAATCACTCCAAAACTATAGATATCACATTT 2613
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1721 AGGAAGCTTCCCAATTACCAGAATCCCAAGAATCACTCCAAAACTATAGATATCACATTT 1662
Query 2614 ATCTGTGAACTTGTGGGTTTGATAAAACTCTGGTGCTATGTATCCCACAGTACCT 2668
||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1661 ATCTGTGAACTTGTGAGTTTGATAAAACTCTGGTGCTATGTATCCCACAGTACCT 1607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100634427290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5