BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31900.1
Length=4671
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482115 jgi|Araly1|482115|fgenesh2_kg.4__1175__AT2G31900.1 7769 0.0
Ahg938803 jgi|Araly1|938803|scaffold_502994.1 531 2e-149
> Ahg482115 jgi|Araly1|482115|fgenesh2_kg.4__1175__AT2G31900.1
Length=4674
Score = 7769 bits (4207), Expect = 0.0
Identities = 4521/4676 (97%), Gaps = 7/4676 (0%)
Strand=Plus/Plus
Query 1 ATGGGGACTCCTGTAAATATCACACTCGGATCACATGTCTGGGTCGAGGATCCAGAACTC 60
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1 ATGGGGACTCCTGTAAATATCACACTCGGGTCACATGTCTGGGTCGAGGATCTAGAACTC 60
Query 61 GCATGGATCAGTGGAGAAGTGACTGAAATCAAAGGCACCAATGCCAAAATAGTCACTGCA 120
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 GCATGGATTAGTGGAGAAGTGATTGAAATCAAAGGCACCAATGCCAAAATAGTCACTGCA 120
Query 121 AACGGGAAAACAGTTGTTGCTAGTATTTCTAGTATCTATCCAAAGGATACAGAGGCTCCG 180
|| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 121 AATGGGAAAACTGTTGTTGCTAGTATTTCTAGTATATATCCAAAGGATACAGAGGCGCCG 180
Query 181 CCTGCAGGAGTTGACGACATGACTAAACTGGCTTACCTCCATGAGCCAGGGGTACTCCAC 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 CCTGCAGGTGTTGACGACATGACTAAACTGGCTTACCTCCATGAGCCAGGGGTCCTCCAC 240
Query 241 AATCTCGATTGCCGTTTTGCATTAAACGAGATATATACTTACACCGGAAACATCTTGATT 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AATCTAGATTGCCGTTTTGCATTAAACGAGATATATACTTACACCGGAAACATCTTGATT 300
Query 301 GCGGTGAATCCATTCCAAAGACTTCCGCATTTGTATAGTGTCCATATGATGGAGCAATAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCGGTGAATCCATTCCAAAGACTTCCGCATTTGTATAGTGTCCATATGATGGAGCAATAT 360
Query 361 AAAGGAGCTGCGTTTGGAGAGCTAAGTCCGCATCTGTTTGCTGTTGCAGACACCAGTTAC 420
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 361 AAAGGAGCTGCGTTTGGAGAGCTAAGCCCGCATCTGTTTGCTGTTGCAGATACCAGTTAC 420
Query 421 AGGGCGATGATTAATGAGGCAAGAAGCCAGTCCATTTTGGTTAGTGGAGAGAGCGGAGCT 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 AGGGCGATGATTAATGAGGCAAGAAGCCAGTCTATTTTGGTTAGTGGAGAGAGCGGAGCT 480
Query 481 GGAAAAACAGAGACAACCAAAATGCTCATGAGATATCTTGCATTCATGGGAGGCAGATCA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGAAAAACAGAGACAACCAAAATGCTCATGAGATATCTTGCATTCATGGGAGGCAGATCA 540
Query 541 GATACCGAAGGGAGAAGCGTTGAACAACAAGTTTTAGAGTCTAATCCAGTGCTCGAAGCT 600
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 541 GATACCGAAGGGAGAAGCGTTGAACAACAAGTTTTAGAGTCTAATCCAGTGTTGGAAGCT 600
Query 601 TTTGGAAACGCCAAAACTGTGAAAAACAACAATTCAAGTCGGTTTGGAAAATTTGTTGAG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTTGGAAACGCCAAAACTGTGAAAAACAACAATTCAAGTCGGTTTGGAAAATTTGTTGAG 660
Query 661 ATCCAATTTGACAAGCGTGGGAAAATATCTGGAGCTGCCATCCGCACTTATCTTCTTGAA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATCCAATTTGACAAGCGTGGGAAAATATCTGGAGCTGCCATCCGCACTTATCTTCTTGAA 720
Query 721 CGGTCTCGTGTTTGCCAAGTTTCAGACCCAGAGAGGAACTATCACTGCTTCTACATGCTC 780
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 721 CGGTCTCGTGTTTGCCAAGTTTCAGACCCTGAGAGGAACTATCACTGCTTCTACATGCTC 780
Query 781 TGTGCAGCACCGCCTGAGGAAGCTAAGAAATTCAAGGTAGGAGATCCAAGGACGTTCCAC 840
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 781 TGTGCAGCACCGCCTGAGGAAGCTAAGAAATTCAAGGTAGGGGATCCAAGGACGTTCCAC 840
Query 841 TATCTAAACCAGACGAACTGCTACGAGGTTTCCAATGTAGATGATGCAAGAGAGTAT-TT 899
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 841 TATCTAAACCAGACGAACTGCTATGAGGTTTCCAATGTAGATGATGCAAGAGAGTATATT 900
Query 900 AGAGACCAGAAATGCCATGGACATTGTGGGCATTGGACAAGAGGCACAGGATGCCATATT 959
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 -GAGACTAGAAATGCCATGGACATTGTGGGCATTGGACAAGAGGCACAGGATGCCATATT 959
Query 960 CCGAGTTGTAGCTGCGATCCTCCACCTTGGGAATGTCAATTTTATCAAAGGAGAAGAAGC 1019
|||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 960 CCGAGTCGTAGCTGCAATCCTCCACCTTGGAAATGTCAATTTTATCAAAGGAGAAGAAGC 1019
Query 1020 AGATTCTTCAAAACTCAGGGATGATAAGTCAAGATATCATCTTCAAACAGCAGCAGAATT 1079
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1020 AGATTCTTCAAAACTCAGGGATGATAAATCAAGATATCATCTTCAAACAGCAGCAGAATT 1079
Query 1080 ACTCATGTGCAATGAGAAGATGATGGAAGATTCACTCTGCAAGCGTGTTATTGTCACTCC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ACTCATGTGCAATGAGAAGATGATGGAAGATTCACTCTGCAAGCGTGTTATTGTCACTCC 1139
Query 1140 GGATGGTAACATTACAAAGCCGCTTGATCCAGAATCGGCAGCCTCAAACCGTGATGCTTT 1199
||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 1140 GGATGGTAACATTACAAAGCCGCTTGACCCAGAATCAGCAGCCTCAAATCGTGATGCTTT 1199
Query 1200 AGCCAAGACAGTGTACTCCAGGCTGTTTGACTGGATTGTAGATAAGATCAACAGTTCAAT 1259
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1200 AGCCAAGACAGTATACTCCAGGCTGTTTGACTGGATTGTGGATAAGATCAACAGTTCAAT 1259
Query 1260 AGGTCAAGACCCGGATGCTAAAAGCTTGATCGGAGTCCTCGACATTTATGGTTTTGAAAG 1319
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AGGTCAAGACCCAAATGCTAAAAGCTTGATCGGAGTCCTCGACATTTATGGTTTTGAAAG 1319
Query 1320 CTTCAAGATCAACAGTTTTGAGCAGCTATGCATCAATCTCACAAATGAGAAGTTACAACA 1379
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1320 CTTCAAAATCAACAGTTTTGAGCAGCTATGCATCAATCTCACAAATGAGAAATTACAACA 1379
Query 1380 GCATTTCAATCAGCATGTATTCAAGATGGAGCAAGAGGAATACACGAGGGAGGAAATAAA 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GCATTTCAATCAGCATGTATTCAAGATGGAGCAAGAGGAATACACGAGGGAGGAAATAAA 1439
Query 1440 CTGGAGCTATGTTGAATTTGTTGATAACCAGGATGTCTTAGATCTTATTGAGAAGAAACC 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 CTGGAGCTATGTTGAATTTGTTGATAACCAGGATGTCTTAGATCTTATTGAGAAGAAACC 1499
Query 1500 AGGAGGCATAATTGCCCTACTTGATGAAGCATGCATGTTTCCCAAGTCGACTCATGAGAC 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 AGGAGGCATAATTGCCCTACTTGATGAAGCATGCATGTTTCCCAAGTCGACTCATGAGAC 1559
Query 1560 GTTTGCACAGAAGATGTATCAAACATATAAGGGACACAAGCGTTTCAGCAAACCTAAGCT 1619
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1560 GTTTGCACAGAAGATGTATCAAACATATAAAGGACACAAGCGTTTCAGCAAACCTAAGCT 1619
Query 1620 TGCCCAAACAGCCTTCACTGTCAACCACTATGCAGGAGATGTTACGTACTCAGCAGAGCA 1679
||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 1620 TGCCCAAACAGCCTTCACTGTTAACCACTATGCAGGAGATGTTACGTATTCAGCGGAGCA 1679
Query 1680 ATTTCTTGACAAAAACAAGGATTATGTTGTGGCAGAACATCAAGCTTTGCTAGATGCATC 1739
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 ATTTCTTGACAAGAACAAGGATTATGTTGTGGCAGAACATCAAGCTTTGCTAGATGCATC 1739
Query 1740 TAAGTGCTCTTTTGTCGCCAATTTGTTTCCACCACTTCCAGAAGACGCATCAAAGCAGTC 1799
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 GAAGTGCTCTTTTGTCGCCAATTTGTTTCCACCACTTCCAGAAGACGCATCAAAGCAGTC 1799
Query 1800 CAAATTTTCATCCATAGGGACCCGTTTCAAGCAACAACTCCAAGCTCTAATGGAGACGCT 1859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 CAAATTTTCATCCATAGGGACCCGTTTCAAGCAACAACTCCAAGCTCTAATGGAGACGCT 1859
Query 1860 GAACACAACAGAGCCCCATTATATTAGATGTGTGAAACCAAATGCAGTTCTGAAGCCCGG 1919
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1860 GAACACAACAGAGCCCCATTATATTAGATGTGTGAAGCCAAATGCAGTTCTGAAGCCCGG 1919
Query 1920 AATTTTTGAGAACGACAACGTCCTAAACCAACTAAGATGCGGAGGTGTACTGGAAGCTAT 1979
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1920 GATTTTCGAGAATGACAACGTCCTAAACCAACTAAGATGCGGAGGTGTACTGGAAGCTAT 1979
Query 1980 AAGAATCAGTTGTGCTGGTTATCCAACGAAACGAGCTTTCGATGAATTCCTAGATCGTTT 2039
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1980 AAGAATCAGTTGTGCTGGTTATCCAACAAAACGAGCTTTCGATGAATTCCTAGATCGTTT 2039
Query 2040 TGTGATGCTAGCAACAGACGTTCCAGAGGGATCCGACGAAAAATCCGCATGTGCTTCGAT 2099
||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 2040 TGTGATGTTAGCAACAGACGTTCCAGAGGGAACCGACGAAAAATCGGCATGTGCTTCGAT 2099
Query 2100 CTGCAACAAGATGGGTCTAAAAGGCTACCAGATAGGGAAAACAAAGATATTTCTTAGGGC 2159
|||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2100 CTGCGACAAGATGGGTTTAAAAGGCTACCAGATAGGAAAAACAAAGATATTTCTTAGGGC 2159
Query 2160 CGGACAGATGGCTGAACTAGATGCAAGAAGAACCGAGGTCTTGGCTGGTGCCACTAAACT 2219
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2160 CGGACAGATGGCTGAACTAGATGCAAGAAGAACCGAGGTCTTGGCTGGTGCCACTACACT 2219
Query 2220 CATTCAGAGGCAGATCAGAACTTATCTGACAAGAAAAGAGTTCCTTGGGCAGAAAAGGGC 2279
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||
Sbjct 2220 CATTCAGAGGCAGATCAGGACTTATTTGACAAGAAAAGAGTTCCTTGGGCAGAAAAAGGC 2279
Query 2280 TACAATTTATATGCAAAAACTTTGGAGAGCAAAACTTGCTCGCAAGTTGTATCAAAACAT 2339
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2280 TACAATTTATATGCAAAAACTTTGGAGAGCACAACTTGCTCGCAAGTTGTATCAAAACAT 2339
Query 2340 GAGAAGAGAAGCTGCTTCAATTTGTATCCAAAAGAACATTCGTGCTCACAGAGCAAGGAA 2399
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2340 GCGAAGAGAAGCTGCTTCAATTTGTATCCAAAAGAACATTCGTGCTCACAGAGCAAGGAA 2399
Query 2400 AAACTATACTAAGCTCCAGGCATCAGCAACAGTTATTCAGACTGGTTTACGGACAATGTC 2459
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2400 AAACTACACTAAGCTCCAGGCATCAGCAACAGTTATTCAGACTGGTTTACGGACAATGTC 2459
Query 2460 TGCTCGAAACAAGCATAGACACAGAAGAAGAACAAAGGCAGCAATTATAATTCAGAGGGA 2519
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 2460 TGCTCGAAACAAGCATAGACATAGAAGAAGAACAAAGGCAGCAATTATAGTTCAGAGGGA 2519
Query 2520 ATGGAGAAGACACCAAGTTCATGAAGCTTATAAGAAGCACAAAAAAGCAACATTAGCATT 2579
||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||
Sbjct 2520 ATGGAGAAGACACCAAGCTCACGAAGCTTATAAGCAGCACAAAAAAGCAACATTAGCATT 2579
Query 2580 ACAATGTCTATGGAGAGCTAAAGTAGCTCGAAAAGAGCTAAAAAATCTCAGAATGGCTGC 2639
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2580 ACAATGTCTATGGAGAGCTAAAGTAGCTCGAAAAGAGCTTAAAAATCTCAGAATGGCTGC 2639
Query 2640 CAGAGAAACTGGGGCACTAAAGGAAGCCAAGGACAAGTTAGAGAAACGTGTGGAAGAGCT 2699
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 2640 AAGAGAAACTGGGGCGCTCAAGGAAGCCAAGGACAAGTTAGAGAAACGTGTGGAAGAGCT 2699
Query 2700 AACCTGGCGTCTCGAATTAGAGAAGAATCAAAAGGCTGATCTCGAAGACGCCAAAGCACA 2759
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 2700 AACCTGGCGTCTCGAATTAGAGAAGCATCAAAAGGCTGATCTCGAAGAAGCCAAAGCACA 2759
Query 2760 AGAAATCGCAAAACTACAAAATAATTTAACTGAATTGCAAGAGAAGCTAGATGAAGCCTA 2819
|||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2760 AGAAATTGCTAGACTACAAAATAATTTAACTGAATTGCAAGAGAAGCTAGATGAAGCCTA 2819
Query 2820 CGCTGCAATCATACGAGACAAAGAAGCAGCAAAATTAGCCATTGAACAAGCTCCACCAAT 2879
||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||| |
Sbjct 2820 CGCTGCAATTATACGAGAGAAAGAAGCAGCAAAATTAGTCATTGAACAAGCTCCACCAGT 2879
Query 2880 CATCAAAGAGGTTCCAGTTGTAGATAACACTCAACTGGAGTTACTGAACAGTCAAAACAA 2939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2880 CATCAAAGAGGTTCCAGTTGTAGATAACACTCAACTGGAGTTACTGAACAGTCAAAACAA 2939
Query 2940 TGAACTGGAGGTTGAGGTAGCTAAATTAAAAGGAAAAATTAAGGAGTTTGAAGTGAAATG 2999
||| |||||||||||||| || ||| |||||||||||||| |||||||||||| ||||||
Sbjct 2940 TGAGCTGGAGGTTGAGGTGGCAAAACTAAAAGGAAAAATTGAGGAGTTTGAAGCGAAATG 2999
Query 3000 TTTTGCACTTGAGAATGATAGCAGGGCAAGTGTAACTGAAGCAGAAGATGCAAAATCAAA 3059
|| ||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 3000 TTCTGCACTTGAGAGTGATAGCAAGGCAAGTCTAACTGAAGCAGAAGATGCAAAATCAAA 3059
Query 3060 GGCCGTCGAATTTCAAGAAATCATCGAAAGATTACATACGAACCTGTCAAACCTTGAATC 3119
|||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 3060 GGCCATCCAATTTCAAGAAATCATCGAAAGATTACAAACGAACCTGTCAAACCTTGAATC 3119
Query 3120 CGAAAATCAGGTTTTGCGTCAGCAGGCTTTGGCCGCTTCAACAAGCGTTGAAGAGATTGG 3179
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 3120 CGAAAATCAGGTCTTGCGTCAGCAGGCTTTGGCCGCTTCAACAAGCGTTGAAGAGACTGG 3179
Query 3180 AGAGTTAAACAGCCTGAAGGATAAGGTTGCAATTCTAGAGTCAGAAAATGAAACTCTTCG 3239
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3180 AGAGTTAAACAGCCTGAAGGATAAGGTTGCAATTCTAGAGTCAGAAAATGAATCTCTTCG 3239
Query 3240 AAGACAGACAGAGTCTGCAGAAAAGACAATGCCTCCTGCAAGAGTTTTTGCGTCTGAAAA 3299
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3240 AAGACAGACAGCTTCTGCAGAAAAGACAATGCCTCCTGCAAGAGTTTTTGCGTCCGAAAA 3299
Query 3300 GAATCTTGAAAATGAACATCAAACAAAAGAGATTCAGGCAACAAAGGAGCCAAGGAATCC 3359
||||||||||||| ||||||||| |||||| ||||||||||||||||| |||||||||||
Sbjct 3300 GAATCTTGAAAATCAACATCAAATAAAAGAAATTCAGGCAACAAAGGAACCAAGGAATCC 3359
Query 3360 AATCAATGTGTTAGCAAAACAAGGGTCTCTAACAGATAGGCAACAGGAGAGCCATGAGGT 3419
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3360 AATCAATGTGTTAGCAAAACAAGGGTCTCTAACAGATAGGCAACGGGAGAGCCATGAGGT 3419
Query 3420 GCTTATGAAATGCCTCACCGACGAGAGAAGGTTTGATAACGAAAAATCTGTGGCAGCTTG 3479
||| |||||||||||||| ||||||||||||||||||||||| | || ||||||||||||
Sbjct 3420 GCTGATGAAATGCCTCACTGACGAGAGAAGGTTTGATAACGACAGATGTGTGGCAGCTTG 3479
Query 3480 GATAGTGTACAAGGCATTACTTCAATGGAGATTATTTGAAGCAGAGAAAACAAACATATT 3539
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3480 GATAGTTTACAAGGCACTACTTCAATGGAGATTATTTGAAGCAGAGAAAACAAACATATT 3539
Query 3540 TGATAGAATTGTTCATAAGATTCGATCGTCCATTGAG--G-GCCAAGATGACACAAGGGA 3596
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 3540 TGATAGAATTGTTCATAAGATTCGATCGTCCATTGAGAAGAGCCAAGATGACACAAGGGA 3599
Query 3597 ACTAGCTTATTGGCTCACAACAAGCTCTACCCTCTTATATCTTCTCCAATCTACACTCAA 3656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3600 ACTAGCTTATTGGCTCACAACAAGCTCTACCCTCTTATATCTTCTCCAATCTACACTCAA 3659
Query 3657 GTTCAGCAATACAAATAATGCGGCTTCAAGACGTAACAGATCATCCCATGCTACACTATT 3716
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 3660 GTTCAGCAATACAAATAATGCGGCTTCAAGACGTAATAGATTATCCCATGCTACACTATT 3719
Query 3717 TGGGAGATTGGTTCAAGGAATGCAACCATCTTCAGTGGGATTGGAAACATCCAGCGGTTA 3776
|||| ||||||||||||||| ||| ||||||||||||| |||||||||||||| || ||
Sbjct 3720 TGGGCGATTGGTTCAAGGAACACAATCATCTTCAGTGGGCTTGGAAACATCCAGTGGCTA 3779
Query 3777 CAGTGGGATGGCTGGAATACCAAATGACCAACAGATGGTCGAAGCTAAATATCCGGCTTT 3836
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 3780 CAGTGGGATGGTTGGAATTTCAAATGACCAACAGATGGTCGAAGCTAAATATCCGGCTTT 3839
Query 3837 ACTATTCAAGCAACACTTAGCAGCATACGTTGAGAAAACATATGGAATGATCCGAGACAA 3896
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 3840 ACTATTCAAGCAACATTTAGCAGCATACGTTGAGAAAACATATGGCATGATCCGAGATAA 3899
Query 3897 ATTAAAGAAAGAGATAAATCCATTACTAAATCTCTGTATCCATGCACCAAGACCAACAAG 3956
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3900 ACTAAAGAAAGAGATAGATCCATTACTAAATCTCTGTATCCATGCACCAAGACCAACAAG 3959
Query 3957 AGCCAAAACCTTGCGAGATGTGACTAAAAGCATCCACTTGACCACAATTGCCAAGCAACA 4016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3960 AGCCAAAACCTTGCGAGATGTGACTAAAAGCATCCACTTGACCACAATTGCCAAGCAACA 4019
Query 4017 AGCATCATATGTACAGTGGCAGAACATTGTCAACAAGCTTGAACATACCTTGACTTTTAT 4076
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 4020 AGCATCATATGTACAATGGCAGAACATTGTCAACAAGCTTGAACATACCTTGACCTTTAT 4079
Query 4077 GGCAGAGAACCATGTCCCATCTATGATCACAAGAAAACTCTTCCATCAGGTTTTCTCGTA 4136
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4080 GGCAGAGAACCAGGTCCCATCTATGATCACAAGAAAACTCTTCCATCAGGTTTTCTCGTA 4139
Query 4137 CATCAATGTGCAGCTCTTTAATAGTTTGTTGCTTCGCCGAGAGTGTTGTTCAGTTAGCAA 4196
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 4140 CATCAATGTGCAGCTCTTTAATAGTTTGTTGCTTCGCCGAGAGTGTTGTTCGGTTAGCAA 4199
Query 4197 TGGAGAATACCTAAAAATGGGCTTGCATGAATTAGAGCAA-TGGTGCCTGAAGGCAGATG 4255
|||||||| || |||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 4200 CGGAGAATATCTTAAAATGGGCTTGCATGAATTAGAG-AAGTGGTGCCTGAAGGCAGACG 4258
Query 4256 ACGAGGCAACACGATCACCATGGGATGAACTTCAACACATAAGGCAAGCAGTGATGTTTC 4315
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 4259 ACGAGGCAGCACGATCACCATGGGATGAACTTCAGCACATAAGGCAAGCAGTGATGTTTC 4318
Query 4316 TGGTCTCACATCAAAAGACACAGAAATCATTGGACGAAATCGCAAAAGAGATATGCCCGG 4375
||||||||||||||||||||||||||||||||||||| || |||||||| |||| |||||
Sbjct 4319 TGGTCTCACATCAAAAGACACAGAAATCATTGGACGAGATTGCAAAAGAAATATTCCCGG 4378
Query 4376 TACTAAGCATTCCACAAGTATATCGAATCGGGACTATGTTTTGGGACGACAAATACGGAA 4435
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 4379 TACTAAGCATTCCACAAGTATATCGAATTGGGACTATGTTTTGGGACGACAAATATGGAA 4438
Query 4436 CTCAAGGACTCTCCCCCGAGGTGATCAATCAGATGAGGAAACTAATGACGGAAGATTCAG 4495
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 4439 CTCAAGGACTCTCCCCTGAGGTGATCAATCAGATGAGGAAACTAATGGCGGAAGATTCAG 4498
Query 4496 CGAACATGACTTACCCTTCTTTCTTGCTAGACGTCGATTCAAGCATTCCTTTCTCAGTGG 4555
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4499 CCAACATGACTTACCCTTCTTTCTTGCTAGACGTCGATTCAAGCATTCCTTTCTCAGTGG 4558
Query 4556 AAGATGTTTCGCAATCCTTCCACGGCGGTAACATTAGCCTCTCCGACGTCGATCCATCGC 4615
|||||||||||||||| ||||||||||| |||||||| |||||||||||||||||| |||
Sbjct 4559 AAGATGTTTCGCAATCTTTCCACGGCGGCAACATTAGTCTCTCCGACGTCGATCCACCGC 4618
Query 4616 CGCTTCTCCGCCAGCGATCTGATTTTCACTTCTTATTCCAGACATTGCCGGAATAA 4671
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 4619 CGCTTCTCCGCCAGCGATCTGATTTTCACTTCTTGTTCCAGACATTGCCGGAGTAA 4674
> Ahg938803 jgi|Araly1|938803|scaffold_502994.1
Length=3791
Score = 531 bits (287), Expect = 2e-149
Identities = 1325/1811 (73%), Gaps = 131/1811 (7%)
Strand=Plus/Plus
Query 155 TCTATCCAAAGGATACAGAGGCTCCGCCTGCA-GGAGTTGACGACATGACTAAACTGGCT 213
|||||||||| || || || ||||| | | | ||||| || |||||||||| | | ||
Sbjct 169 TCTATCCAAAAGACACTGAAGCTCCTTCAG-AGGGAGTAGAGGACATGACTAGATTATCT 227
Query 214 TACCTCCATGAGCCAGGGGTACTCCACAATCTCGATTGCC-GTTTTGCA-TTAAACGAGA 271
|| || |||||||| | || || |||| || | || | | || | | || || |
Sbjct 228 TATCTGCATGAGCCTGCAGTTCTTGACAA-CTTGGCAACCAGATATG-AGCTCAATGAAA 285
Query 272 TATATACTTACACCGGAAACA-TCTTGATTGCGGTGAATCCATTCCAAAGACTTCCGCAT 330
| |||||||| || ||||||| |||| ||||| || ||||| || ||| |||| || |||
Sbjct 286 TTTATACTTATACAGGAAACATTCTT-ATTGCCGTCAATCCCTTTCAAGGACTCCCCCAT 344
Query 331 TTGTATAG-TGTC-CATATGATGGAGCAA-TATAAAGG-AG-CTGCGTTT-GGAGAGCT- 383
| ||| | || | | | |||||| || ||| |||| || || ||| ||||||
Sbjct 345 CTCTAT-GATG-CTGAGGTTATGGAG-AAGTAT-AAGGAAGCCT--ATTTCAAAGAGCTG 398
Query 384 AAGTCCGCATCTGTTTGCTGTTGCAGACA-C-CAGTTACAGGGCGATGATTAATGA-GGC 440
|| ||| ||| | ||||| ||| | || | || || |||| ||||||||||| |||
Sbjct 399 AA-TCCTCATGTTTTTGCAATTGGTGGCATCGCA--TATAGGGAAATGATTAATGAGGGC 455
Query 441 AAGAAGCCAGTCCATTTTGGTTAGTGGAGAGAGCGGAG-CTGGAAAAACAGAGACAACCA 499
| ||| | | | || ||||| ||||| || || || | ||||||| ||||| ||||| |
Sbjct 456 AGGAA-CAAATGTATATTGGTCAGTGGTGAAAGTGG-GTCTGGAAAGACAGAAACAACTA 513
Query 500 AAATGCTCATGAGATATCTTGCATTCATGGGAGG-CAGA-T-CAGATACCGAAGGGAGAA 556
| ||||||||| | || || |||| | | || || || | | ||| | ||||| || |
Sbjct 514 AGATGCTCATGCGTTACCTAGCATACTTTGGTGGACATAGTGCAG-T--TGAAGGAAGGA 570
Query 557 GC-GTTGAACAA-CAAGTTTTAGAGTCTAATCCAGTGCTCGAAGCTTTTGGAAACGCCAA 614
| |||||| || ||||||||||| || ||||| || || || || ||||| || || ||
Sbjct 571 -CAGTTGAA-AACCAAGTTTTAGAATCAAATCCCGTTCTTGAGGCATTTGGTAATGCGAA 628
Query 615 AACTGTGAAAAACAACAATTCAAGTCGGTTTGGAAAATTTGTTGAGATCCAATTTGACAA 674
|| || || ||||||||||| ||||| |||||||||||||| ||||| || ||||| |
Sbjct 629 GACAGTTAAGAACAACAATTCCAGTCGTTTTGGAAAATTTGTGGAGATTCAGTTTGATGA 688
Query 675 GCGTGGG-AAAATATCTGGAGCTGCCATCCGCACTTATCTTCTT-GA-ACGGTCTCGTGT 731
|||||| |||||| || || |||||| | ||||| ||| || || | |||| |||||
Sbjct 689 -CGTGGGCCGAATATCAGGGGCAGCCATCAGAACTTACCTT-TTGGAGA-GGTCACGTGT 745
Query 732 TTGCCAAGTTTCAGACCCAGAGA-GGAACTATCACTGCTTCTA-CATGCTCTGTGCAGCA 789
||||||||||||||| || || | | |||||||||||||| || | | || ||||| ||
Sbjct 746 TTGCCAAGTTTCAGATCCTGA-ACGTAACTATCACTGCTTTTATC-TCCTGTGTGCTGCT 803
Query 790 CCGCCTGAGGAAGCTAAGAAATTCAAGGTAGGAGATCC-AAGGACGTTCCACTATCTAAA 848
|| |||||||| | | ||| || ||| | || ||||| || | | || | |||||| ||
Sbjct 804 CCTCCTGAGGATGTTGAGAGGTTTAAGTTGGGGGATCCTAA-GTCATTTCGCTATCTTAA 862
Query 849 CCAGA-CGAACTGCTACGAGGTTTCCAATGTAGATGATGCAAGA-GAGTAT-TTAG-AGA 904
||| | | | ||||||||| || |||| ||||||| ||| |||||| || | | |
Sbjct 863 CCA-ATCTAGCTGCTACGAACTTGATGGTGTAAATGATGC-AGAGGAGTATCTT-GCA-A 918
Query 905 CCAGAAATGCCATGGACATTGTGGGCAT-TG-GACAAGAGGCACAGGATGCCATATTCCG 962
| |||| || ||||| | || || || | || || | | ||||||||| || ||| |
Sbjct 919 CTAGAAGGGCTATGGATGTAGTTGGAATAAGTGA-AA-AAGAACAGGATGCAATTTTCAG 976
Query 963 AGTTGTAGCTGCGATCCTCCACCTTGGGAAT-GTCAATTTTATC-AAAGGAGAAGAAGCA 1020
|||||| ||||| || ||||| ||||| ||| | || ||| || || |||||||| ||
Sbjct 977 AGTTGTGGCTGCCATTCTCCATCTTGGAAATATTGAA-TTT-TCGAAGGGAGAAGATGCT 1034
Query 1021 GATTCTTCAAAACTCAGGGATGATA-AGTCAA-GATATCATCTTCAAACAG-CAGCAGAA 1077
||||| ||| | | | ||||| | |||||| | | |||||| |||| | || |||||
Sbjct 1035 GATTCATCATCAGTAAAAGATGA-ACAGTCAATG-TTTCATCTCCAAA-TGACATCAGAA 1091
Query 1078 TTACTCATGTGCAATGAGAAGAT-GATGGAAGATTCACTCTGCAAGCGTGTTATTGTCAC 1136
|||||||||| || | | | |||||| | | || |||||| | || |||||
Sbjct 1092 CTACTCATGTGTGATCCCCA-TTCCTTAGAAGATGCTTTGTGTAAGCGTATGATGGTCAC 1150
Query 1137 TCCGGATGGTAACATTA-CAA-AGCCG-CTTGATCCAGAATCG-GCAGCC-TCAAACCGT 1191
|| || | || ||| ||| || | |||||||| | | || ||| | | | |
Sbjct 1151 CCCAGA-AG-AA-GTTATCAAGAGAAGTCTTGATCC-TCTTGGTGCTGCCGT-TAGCAGG 1205
Query 1192 GATGCTTTAGCCAAGACAGTGTACTCCAGGCTGTTTGACTGGATT-GTAG-ATAAGATCA 1249
|||| |||||| |||||| | ||||| || || ||||| ||| || || | | || || |
Sbjct 1206 GATGGTTTAGCAAAGACAATATACTCTAGACTCTTTGATTGG-TTGGT-GAACAAAATAA 1263
Query 1250 ACAGT-TCAATAGGTCAAGACCCGGATGCTAAAAGCTTGATCGGAGTCCTCGACATTTAT 1308
| | | || || || ||||| | || ||| |||||||||||||||| ||||| |||
Sbjct 1264 ATA-TCTCTATTGGGCAAGATTCTCATTCTAGGCGCTTGATCGGAGTCCTTGACATCTAT 1322
Query 1309 GGTTTTGAAAGCTTCAAGATCAACAGTTTTGAGCAGCTATGCATCAATCT-CACAAATGA 1367
|||||||| ||||| || | ||||||||||||||| | || || ||| | ||| |||||
Sbjct 1323 GGTTTTGAGAGCTTTAAAACCAACAGTTTTGAGCAATTCTGTATTAAT-TACACGAATGA 1381
Query 1368 GAAGTTACAACAGCATTTCAATCAGCATGTATTCAAGATGGAGCAAGAG-GAATA-CACG 1425
||| | ||||||||||||||||||||||||||||| ||||| |||| | ||||| || |
Sbjct 1382 AAAGCTGCAACAGCATTTCAATCAGCATGTATTCAAAATGGAACAAG-GTGAATATCA-G 1439
Query 1426 AGGGAGGAAATAAACTGGAGCTATGTTGAATTTGTTGATAACCAGGATGTCTTAGATCTT 1485
| || |||||| | ||||||||||| || ||||||||||| || |||||| | |||||
Sbjct 1440 AAAGAAGAAATAGATTGGAGCTATGTGGAGTTTGTTGATAATCAAGATGTCGTGGATCTG 1499
Query 1486 ATTGAGAAGAAACCAGGAGGCATAATTGCCCTACTTGATGAAGCATGCATGTTTCCCAAG 1545
|| || |||||||| || || || ||||| || || || |||||||||||| | || ||
Sbjct 1500 ATCGAAAAGAAACCGGGTGGAATTATTGCTCTGCTGGACGAAGCATGCATGCTACCAAAA 1559
Query 1546 TCGACTCATGAGACGTTTGCACAGAAGATGTATCAAACATAT-AAGGGA-CACAAGCGTT 1603
|| |||| ||| || ||| | ||||| ||||||| |||| | |||| | || ||||| |
Sbjct 1560 TCAACTCCTGAAACATTTTCTGAGAAGCTGTATCACACAT-TCAAGG-ATCATAAGCGCT 1617
Query 1604 TCA-GCAAACCTAAGCTTGCC-CAAACAGCCTTCAC-TGTCAAC-CACTATGCAGGAGAT 1659
||| | ||||| || ||| | | | ||| || || | | | || |||||||| |||
Sbjct 1618 TCATG-AAACCAAAA-TTGACTCGATCAGATTTTACAT-T-AGTTCATTATGCAGGGGAT 1673
Query 1660 GTT-ACGTACTCAG-CAGAGCAATTTCTT-GACAAAAACAAGGATTATGTTGTGGCAGAA 1716
||| | ||| ||| | || |||||| || ||||||||||| || |||||||| || ||
Sbjct 1674 GTTCAA-TAC-CAGTCCGATCAATTT-TTAGACAAAAACAAAGACTATGTTGTTGCCGAG 1730
Query 1717 CATCAAGCTTTGCTAGATGCATCTAAGTGCTCTTTTGTCGCCAAT--TTGTTTCCACCAC 1774
||||| | |||| || |||| || || || |||||||| | || || ||||| || |
Sbjct 1731 CATCAGGATTTGTTAAATGCTTCCAAATGTTCTTTTGT-GTCAGGCCTT-TTTCCTCCTC 1788
Query 1775 TTCC-AGA-AGACGCATCAAAGCAGTCCAAATTTTCATCCATAGG-GACCCGTTTCAAGC 1831
|||| | | ||| | | |||| | | || ||||| || || || | | ||||||||||
Sbjct 1789 TTCCTAAAGAGA-GTAGCAAATC--T--AAGTTTTCTTCAATTGGCG-CTCGTTTCAAGC 1842
Query 1832 AACAACTCCAAGCT-CTAATGGAGACGCTGAACACAACAGAGCCCCATTATATTAGATGT 1890
|||| | ||| | || |||||||| |||||| | || || ||||| || || ||||||
Sbjct 1843 TACAATTGCAA-CAGCTGATGGAGACACTGAACTCGACGGAACCCCACTACATCAGATGT 1901
Query 1891 GTGAAACCAAA 1901
|| || |||||
Sbjct 1902 GTTAAGCCAAA 1912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 176739369012
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5