BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31910.1
Length=2499
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900997 jgi|Araly1|900997|Al_scaffold_0004_1647 3258 0.0
Ahg919261 jgi|Araly1|919261|scaffold_100542.1 968 0.0
> Ahg900997 jgi|Araly1|900997|Al_scaffold_0004_1647
Length=2211
Score = 3258 bits (1764), Expect = 0.0
Identities = 2052/2194 (94%), Gaps = 7/2194 (0%)
Strand=Plus/Plus
Query 292 ATGCTTCTTGAGACATTCGCAAACTTAGCTCTCGTTTACAACGTTTTCCTCCTCGGTCTC 351
||| |||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGGTTCTCGAGACGTTCGCAAACTTAGCTCTCGTTTACAACATTTTCCTCCTCGGTCTC 60
Query 352 GGCTTGGACTTGAGGATGATAAAGATCAAAGACATCAAACCAGTGATCATAGCCATTGTT 411
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 GGCATGGACTTGAGGATGATAAAGATCAAAGACACCAAACCAGTGATCATAGCCATTGTT 120
Query 412 GGCCTCCTTGCGGCTTTACTTGCCGGTGCTGGCTTATACTACCTTCCC-AGTAACGGAGA 470
|||||||||| |||||||||||||||||||||||| ||||||| |||| ||||||||||
Sbjct 121 GGCCTCCTTGTGGCTTTACTTGCCGGTGCTGGCTTTTACTACC-TCCCGGGTAACGGAGA 179
Query 471 GGCCGACAAAATCCTAGCAGGTTGTATGTACTGGTCGATCGCATTTGGCTGTACAAATTT 530
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 180 CCCCGACAAAATCCTAGCAGGTTGTGTTTACTGGTCGATCGCATTTGGCTGTACAAATTT 239
Query 531 CCCTGATCTTGCTAGGATTCTTGCGGATCTCAAGCTCTTGCGTACGGATATGGGACATAC 590
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 240 CCCCGATCTTGCTAGGATTCTTGCGGATCTCAAGCTCTTGCGTTCGGATATGGGACATAC 299
Query 591 TGCAATGTGTGCAGCCGTTGTTACTGATTTGTGCACTTGGATTCTCTTCATTTTTGGAAT 650
||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 300 CGCAATGTGTGCAGCCATTATTACTGATTTGTGCACTTGGATTCTCTTCATTCTTGGAAT 359
Query 651 GGCGATTTTTTCCAAATCTGGTGTACGCAACGAAATGTTGCCATACTCATTAGCATCAAC 710
||||| |||||||||| ||||| |||| ||||||||||||||||||||||||| ||||||
Sbjct 360 GGCGAGTTTTTCCAAAGCTGGTCTACGGAACGAAATGTTGCCATACTCATTAGTATCAAC 419
Query 711 CATAGCTTTTGTCCTTCTCTGCTACTTTGTGATCCAACCTGGAGTGGCTTGGATCTTCAA 770
|| ||||||| || |||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 420 CACAGCTTTTATCATTCTCTGCTACTTTGTGATCCATCCTGGAGTGGCTTGGGCCTTCAA 479
Query 771 CAACACCGTCGAAGGAGGTCAAGTGGGAGACACTCACGTATGGTACACTCTCGCTGGAGT 830
|||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| |||||
Sbjct 480 CAACACCGTCAAAGGAGGTCAAGTAGGAGACACTCACGTATGGTTCACTCTCGCCGGAGT 539
Query 831 CATTATTTGCAGCTTAATCACCGAAGTATGTGGGGTTCACTCAATTACCGGAGCATTCTT 890
| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 540 CCTTATTTGCAGCTTAATCACCGAAGTATTTGGTGTTCACTCAATTACCGGAGCATTCTT 599
Query 891 GTTCGGTCTATCGATCCCTCATGACCACATCATTCGAAAAATGATCGAAGAGAAGCTCCA 950
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTTCGGTCTTTCGATCCCTCACGACCACATCATTCGAAAAATGATCGAAGAGAAGCTCCA 659
Query 951 CGATTTCCTCTCGGGAATGCTAATGCCTCTTTTCTACATCATCTGCGGTTTAAGAGCTGA 1010
||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 TGATTTCCTCTCCGGAATACTAATGCCTCTTTTCTACATCATTTGCGGTTTAAGAGCTGA 719
Query 1011 TATTGGTTACATGAACAGGACCGTGAGCGTTGGAATGATGGCGGTTGTGACTTCTGCGTC 1070
|||| |||||||| || | ||||||||||||| |||||||| |||||| |||||||||
Sbjct 720 TATTAGTTACATGTCCAAGTTCGTGAGCGTTGGAGTGATGGCGTTTGTGATTTCTGCGTC 779
Query 1071 GGTTATGGTGAAGATTTTGTCAACGATGTTTTGCTCCATTTTCTTGCGTATACCTTTGCG 1130
||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 780 AATTATGGTGAAGATTTTGTCAACGATTTTTTGCTCCATCTTCTTGCGTATGCCTTTGCG 839
Query 1131 TGATGGTTTAGCCATTGGTGCACTTATGAATACCAAGGGAACAATGGCACTAGTCATTCT 1190
||||||||| |||||||||||||||||||| ||||||||||| |||||| ||||||||||
Sbjct 840 TGATGGTTTCGCCATTGGTGCACTTATGAACACCAAGGGAACTATGGCATTAGTCATTCT 899
Query 1191 CAATGCTGGACGAGACACCAAGGCATTGGACGTTATTATGTACACTCATCTGACGTTGGC 1250
||||| ||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 900 TAATGCAGGAAGAGACTCCAAGGCATTGGACGTTATTATGTACACTCATATGACGTTGGC 959
Query 1251 GTTTCTAGTGATGTCAATGGTGGTGCAGCCACTATTAGCCATTGCTTACAAACCAAAGAA 1310
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 960 GTTTCTAGTGATGTCAATGGTGGTGCAGCCACTATTAACCTTTGCTTACAAACCAAAGAA 1019
Query 1311 GAAGTTGATTTTCTATAAAAACCGAACCATTCAAAAACACAAAGGAGAGTCAGAGCTTTG 1370
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GAAGTTGGTTTTCTATAAAAACCGAACCATTCAAAAACACAAAGGAGAGTCAGAGCTTTC 1079
Query 1371 TGTATTGACATGCGTCCATGTCCTCCCTAACGTCTCTGGCATAACCAATCTATTACAACT 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TGTATTGACATGCGTCCATGTCCTCCCTAACGTCTCTGGCATAACCAATCTATTACAACT 1139
Query 1431 CTCTAACCCGACCAAGAAATCTCCTCTTAACGTTTTTGCTATCCACCTAGTCGAGCTAAC 1490
|||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||
Sbjct 1140 CTCTAACCCGACCAAGAAATATCCTCTTAACGTTTTTGCCATCCACCTGGTCGAGCTAAC 1199
Query 1491 GGGTCGCACCACGGCTTCGTTGCTCATTATGAACGATGAGGCCAAACCGAAAGCTAACTT 1550
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1200 GGGTCGCACCACGGCTTCGTTGCTCATTATGAACGATGAGGCCAAACCAAAAGCTAACTT 1259
Query 1551 TGCTGACCGAGTTAGAGCGGAATCTGACCAGATCGCTGAGATGTTCACAGCTCTCGAAGT 1610
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1260 TGCTGACCGAATTAGAGCGGAATCTGACCAGATCGCTGAGATGTTCACAGCTCTGGAAGT 1319
Query 1611 GAACAACGACGGGGTAATGGTTCAGACCATTACCGCGGTTTCACCTTACGCAACGATGGA 1670
||||||||||||| | ||||||||||||| ||||||||||||||||| || || ||| |
Sbjct 1320 GAACAACGACGGGATTCTGGTTCAGACCATCACCGCGGTTTCACCTTATGCGACAATGCA 1379
Query 1671 CGAAGATATTTGTTTGTTGGCCGAGGATAAACAAGCCTGCTTCATTTTATTGCCTTACCA 1730
|||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1380 CGAAGATATTTGTTCGCTGGCCGAGGATAAACAAGCCAGCTTCATTTTATTGCCTTACCA 1439
Query 1731 CAAGAATATGACGTCAGACGGTCGGTTAAATGAAGGTAACGCAGTGCACGCTGAAATCAA 1790
||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 1440 TAAGAATATGACGTCAGACGGTCGGTTAAATGAAGGAAACGCGGTGCATGCTGAAATCAA 1499
Query 1791 CCAAAACGTTATGAGCCACGCGCCTTGTTCGGTTGGGATTTTGGTTGACCGTGGCATGAC 1850
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 CCAAAACGTTTTGAGCCACGCGCCTTGTTCGGTTGGGATTTTGGTTGACCGTGGCATGAC 1559
Query 1851 GACTGTCCGGTTTGAATCTTTTATGTTCCAAGGCGAAACCACAAAGAAAGAAATCGCCAT 1910
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1560 GACTGTCCGGTTTGAATCTTTTTTGTTCCAAGGTGAAACCACAAAGAAAGAAATCGCCAT 1619
Query 1911 GCTATTCCTAGGAGGTCGAGACGACAGAGAGGCTTTGGCTTACGCTTGGAGGATGGTGGG 1970
||| ||| | |||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1620 GCTGTTCGTTGGAGGTCGGGACGACCGAGAGGCTTTGGCTTACGCTTGGAGGATGGTGGG 1679
Query 1971 ACAAGAAATGGTTCAACTCACGGTCGTTAGATTCGTCCCAAGCCAGGAAGCTTTAGTCTC 2030
|||||||||||||||||||||||| || |||||||||||||||| ||||||| |||||||
Sbjct 1680 ACAAGAAATGGTTCAACTCACGGTTGTGAGATTCGTCCCAAGCCGGGAAGCTCTAGTCTC 1739
Query 2031 AGCCGGGGAAGCCGCGGACGAGTACGAGAAGGATAAACATGTCGATGAAGAGTCCATCTA 2090
||| ||||||||| |||||||||||||||||||||||||||||||| | ||||||
Sbjct 1740 GGCCA---AAGCCGCGGTGGAGTACGAGAAGGATAAACATGTCGATGAAGAATGCATCTA 1796
Query 2091 CGAGTTTAACTTCAAGACTATGAATGATCCATCAGTGACTTATGTAGAGAAAGTGGTTAA 2150
||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1797 CGAGTTTAATTTCAAGACTATGAATGATCCGTCAGTGACTTATATAGAGAAAGTGGTTAA 1856
Query 2151 -GAATGGCCAAGAAACGATCACAGCGATTTTAGAACTGGAAGATAACAATTCTTACGATC 2209
|| ||| ||||| ||| ||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1857 CGA-TGGTCAAGATACGGTCACAGCCATTTTAGAATTGGAAGATAACAATTCTTACGATC 1915
Query 2210 TTTACATTGTGGGAAGAGGATATCAAGTAGAAACACCTGTGACCTCAGGGTTGACAGATT 2269
|||| ||||| |||||||| |||||||||||||||||||||||| |||| ||||||||||
Sbjct 1916 TTTATATTGTAGGAAGAGGCTATCAAGTAGAAACACCTGTGACCGCAGGATTGACAGATT 1975
Query 2270 GGAATAGTACTCCGGATTTAGGGATTATAGGCGATACATTAATTTCATCAAACTTCACAA 2329
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1976 GGAGTAGTACTCCGGATTTAGGGACTATAGGCGATACATTAATTTCATCAAACTTCACAA 2035
Query 2330 TGCAAGCTTCGGTTCTTGTGGTCCAACAATACTCTTCTGCTAACAGACAAACCGCAGAAA 2389
|||||||||||||||||||||||||||||||||| |||||| |||||||||| |||| |
Sbjct 2036 TGCAAGCTTCGGTTCTTGTGGTCCAACAATACTCATCTGCTTACAGACAAACGGCAGGTA 2095
Query 2390 ACAACAATCAAGAACCTGTCCAAGGTAAAGCCAAGACCGATCATGAGGCTACGCCTTTTA 2449
|||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 2096 ACAACAATCAAGAACCTGTCCAAGGTGGAGCCAAGACCGCTCATGAGGCTAAGCCTTTTA 2155
Query 2450 TGGAAGACGAGGATGATGAAGTAGAACATCAGTA 2483
||||||||||||||| ||||| ||||||||||||
Sbjct 2156 TGGAAGACGAGGATGGTGAAGAAGAACATCAGTA 2189
> Ahg919261 jgi|Araly1|919261|scaffold_100542.1
Length=2642
Score = 968 bits (524), Expect = 0.0
Identities = 1751/2334 (75%), Gaps = 122/2334 (5%)
Strand=Plus/Plus
Query 111 TCCTTTCTTTATGACGCAACTGTCTGTCGCTAATCTTACCTACCGCATACTCTACTAT-T 169
||| ||||| || |||||||| | |||||| || |||| ||| ||| | ||||||||| |
Sbjct 173 TCCGTTCTTCATAACGCAACTCTTTGTCGCGAACCTTAGCTATCGCGTCCTCTACTATAT 232
Query 170 TTCTTAAGCCTCTATGTCTTCCTCCTTTCGTCGCTCAAATACTTTGCGGATTACTGTTCA 229
| | ||| | | ||||||||||||||| |||||||| || || |||||| | || |
Sbjct 233 AACCCGACCCT-TTTATCTTCCTCCTTTCGTAGCTCAAATCCTCTGTGGATTATTATTTA 291
Query 230 GCCCGACTGTGCTCGGCAATAACGAAGTGGTCCT--T-AAACTTATATTCCCTTATAAAT 286
|||| | |||||| || || || | | || | | | | | ||||||| || | ||
Sbjct 292 GCCCAAGTGTGCTTGGGAA-CAC-ACCT-TTCATAGTCACCCATGTATTCCCCTACAGAT 348
Query 287 AT-ACAATGCTTCTTGAGACATTCGCAAACTTAGCTCTCGTTTACAACGTTTTCCTCCTC 345
| |||||| |||||||||||||||||||||||||||| || |||||| | ||||||||
Sbjct 349 -TCACAATGGTTCTTGAGACATTCGCAAACTTAGCTCTTGTCTACAACATCTTCCTCCTT 407
Query 346 GGTCTCGGCTTGGACTTGAGGATGATAAAGATCAAAGA-CATCAAACCAGTGATCATAGC 404
||||| || ||||| |||||||| | ||||| || | ||||||| || ||||| ||
Sbjct 408 GGTCTAGGGATGGACCTGAGGATGGTGCGGATCACCGAGC-TCAAACCGGTCATCATCGC 466
Query 405 CATTGTTGGCCTCCTTGCGGCTTTACTTGCCGGTGC-TGGCTTATACTACCTTCCCAGTA 463
| ||| || || |||| ||||||| || ||||| | ||| ||||| || ||| | |
Sbjct 467 CTTTGCGGGGCTTCTTGTTGCTTTACCTGTTGGTGCCTTTCTT-TACTATCT-CCCGGGA 524
Query 464 AC-GGAGAGGCC-GACAAAATCCTAGCAGGTTGTATGTACTGGTC-GATCGCATTTGGCT 520
| || | || ||||| ||| | | ||||| | | |||||| | |||| | | ||
Sbjct 525 AATGGCCAT-CCAGACAAGATCATCTCTGGTTGCGTCTTCTGGTCTG-TCGCGCTAGCCT 582
Query 521 GTACAAATTTCCCTGATCTTGCTAGGATTCTTGCGGATCTCAAGCTCTTGCG-TACGGAT 579
|||| || |||||||| || || ||||| ||||||||||| ||||| ||||| | || ||
Sbjct 583 GTACCAACTTCCCTGACCTGGCAAGGATCCTTGCGGATCTTAAGCTTTTGCGGTCCG-AT 641
Query 580 ATGGGACATACTGCAATGTGTGCAGCCGTTGTTACTGATTTGTGCACTTGGATTCTCTTC 639
||||| | ||| || |||||||||||| || | |||||||||||||| ||| | ||| ||
Sbjct 642 ATGGGCCGTACGGCCATGTGTGCAGCCATTATCACTGATTTGTGCACATGGGTCCTCCTC 701
Query 640 ATTTTTGGAATGGCGATT-TTTTC-CAAATCTGGTGTAC--GCAACGAAATGT-TGCCAT 694
||||||| | || || |||| |||| | || | || | ||| |||| | |||| |
Sbjct 702 GTTTTTGGGTTCGC--TTCTTTTAGCAAAGCAGG-G-ACATGGAAC-AAATTTATGCCGT 756
Query 695 AC-TCATTAG-CATCAAC-CATAGCTTTTGTCCTTCTCTGC-TACTTTGTGATCCAACCT 750
| | || || | ||| | || | ||| ||||| |||||| || |||||||||| ||
Sbjct 757 TCGTGAT-AGTCGTCACCGCA-ATCTTC-GTCCTCCTCTGCATA-TTTGTGATCCGTCCG 812
Query 751 GGAGTGGCTTGGATCTTCAACAACACCGTCGAAGG-AGGTCAAGTGGGAGACACTCACGT 809
||| | || ||||||||| ||| ||||| ||||| |||||| || |||||||| |||||
Sbjct 813 GGAATAGCATGGATCTTCTCCAAGACCGT-GAAGGCAGGTCACGTCGGAGACACCCACGT 871
Query 810 ATGGTACACTCTCGCTGGAGTCATTATTTGCAGCTTAATCACCGAAGTATGTGGGGTTCA 869
|||| || | | | || || | | ||| || | ||||| || | ||| ||||| ||
Sbjct 872 TTGGTTCATTTTAGGAGGTGTGGTCCTATGCGGCCTGATCACAGACGCATGCGGGGTCCA 931
Query 870 CTCAATTACCGGAGCATTCTTGTTCGGTCTATCGATCCCTCATGACCACATCATTCGAAA 929
||| || ||||| |||||| |||||||||| || || || || ||||||||||| || ||
Sbjct 932 CTCCATAACCGGGGCATTCCTGTTCGGTCTCTCCATTCCGCACGACCACATCATACGTAA 991
Query 930 AATGATCGAAGAGAAGCTCCACGATTTCCTCTC-GGGAATGCTAATGCCTCTTTTCTACA 988
|||||||| ||||||||||| || |||||||| |||| | || |||||||| |||||||
Sbjct 992 CATGATCGAGGAGAAGCTCCATGACTTCCTCTCCGGGA-TCCTTATGCCTCTCTTCTACA 1050
Query 989 TCATCTGCGGTTTAAGAGCTGATATTGGTTACATGAAC-AGGAC-CGTGAGC--GTTGGA 1044
|||| || || ||| |||| |||||||||| |||| | | || | ||| | ||| |
Sbjct 1051 TCATTTGTGGGTTACGAGCAGATATTGGTTTCATGCTCGACTACAC-TGA-CAAGTTC-A 1107
Query 1045 ATGATGGCGGTTGTGACTT-CTGCGTCGGTTATG-GTGAAGATTTTGTCAAC-GATGTTT 1101
|||||| || || | || || | || || | || ||||| || | || | || |
Sbjct 1108 -TGATGGTTGTAGTCATTTGCT-CTTCC-TTCTTAGTAAAGATCGTGACTACCG-TGGTC 1163
Query 1102 TGCTCCATT-TTCTTGCGTATACCTTTGCGTGATGGTTTAGCCATTGGTGCACTTATGAA 1160
||| || ||| ||| ||| ||| ||||||| | || || || || || ||||||||
Sbjct 1164 ACCTCT-TTATTCATGCATATGCCTATGCGTGACGCATTCGCTATCGGAGCCCTTATGAA 1222
Query 1161 TACCAAGGGAACAATGGCACTAGTCATTCTCAATGCTGGACGAGACACCAAGGCATTGGA 1220
||||||||||| | | || ||| |||| |||||||| || || || ||||| ||||
Sbjct 1223 CACCAAGGGAACTTTATCGCTGGTCGTTCTTAATGCTGGTCGCGATACTAAGGCGCTGGA 1282
Query 1221 C-GTT-ATTATGTACACTCATCTGACGTTGGCGTTTCTAGTGATGTCAATGGTGGT-GCA 1277
|| | ||||| |||||| ||||| | ||| |||||||||||||| | || || | |
Sbjct 1283 TAGTCCA--ATGTATACTCATATGACGATCGCGCTTCTAGTGATGTCACTAGTCGTCG-A 1339
Query 1278 GCCACTAT-TAGCCATTGCTTACAAACCAAAGAAGAAG-TTGATTT-TCTATAAAAACCG 1334
||| || | | || |||| ||||| || ||||| || ||| || | || || ||||
Sbjct 1340 GCCTCT-TCTCGCGGTTGCATACAAGCCCAAGAAAAAACTTG-TTCAT-TACAAGTACCG 1396
Query 1335 AACCATTCAAAA-ACACAAAGGAGAGTCAGAGCTTT-GTGTATT-GACATGCGTCCATGT 1391
|| | ||||| | ||||||||| ||||| ||| | || || | | ||||||||| |
Sbjct 1397 TACGGTCCAAAAGAT-CAAAGGAGAAACAGAG-TTTCGCGTCTTAG-CTTGCGTCCATAT 1453
Query 1392 CCTCCCTAACGTCTCTGGCATAACCAATCTATTACAACTCTCTAACCCGACCAAGA-AAT 1450
||||| || |||||||| || |||||||| |||||| |||| ||||| ||||| | |||
Sbjct 1454 ACTCCCCAATGTCTCTGGGATCACCAATCTCTTACAAGTCTCAAACCCAACCAA-ACAAT 1512
Query 1451 CTCCTCTTAACGTTTTTGCTATCCACCTAGTCGAGCTAACGGGTCGCACCACGGCTTCGT 1510
| ||||| | |||||| || || ||||| || ||||| || ||||| |||||||| |||
Sbjct 1513 CACCTCTCAGCGTTTTCGCCATTCACCTCGTGGAGCTCACCGGTCGAACCACGGCCTCGC 1572
Query 1511 TGCTCATTATGAACGATGAG-GCCAAACCGAAAGCTAACTT-TGCTGACCGAGTTAGAGC 1568
|||| || |||||||| || || ||||| ||||||||||| | | ||| |||| |||||
Sbjct 1573 TGCTAATCATGAACGACGAATGC-AAACCAAAAGCTAACTTCT-CGGACAGAGTCAGAGC 1630
Query 1569 GGAATCTGACCAGATCGCTGAGATGTTC-ACAGCTCTCGAAGTGAACAACGACGGGGTAA 1627
|| || ||||| |||||||||| ||| | |||| | ||||| |||||||||| | |
Sbjct 1631 AGAGTCCGACCAAATCGCTGAGACCTTCGA-AGCTATGGAAGTCAACAACGACGCAATGA 1689
Query 1628 TGGTTCAGACCATTACCGCGGTTTCACCTTACGCAACGATGGACGAAGATATTTGTTTGT 1687
|||||||||||| ||||| || || ||||||||||| ||| |||||||||| || ||
Sbjct 1690 CGGTTCAGACCATCACCGCAGTCTCTCCTTACGCAACCATGCACGAAGATATCTGCGCGT 1749
Query 1688 TGGCCGAGGATAAACAAGCCTGCTTCATTTTATTGCCTTACCACAAGA-A-TATGACGTC 1745
| |||||||| || | || || ||||| |||||||||||||||| | | | |||| |
Sbjct 1750 TAGCCGAGGACAAGCGAGTTTGTTTCATCATATTGCCTTACCACAA-ACACT-TGACACC 1807
Query 1746 AGACGGTCGGTTAA-ATGAAGGTAACGCAG-TGCACGCTGAAATCAACCAAAACGTTATG 1803
||||||||| | | ||||| ||| | | ||||||||||| |||||||||||| ||
Sbjct 1808 GGACGGTCGGATGGGA-GAAGGAAACTCTTCT-CACGCTGAAATTAACCAAAACGTTTTG 1865
Query 1804 AGCCACGCGCCTTGTTCGGTTGGGATTTTGGTTGACCGTGGCATGACGACTG-TCCGGTT 1862
|||||||| ||||| ||||| |||||||| || |||||||| ||| | | || ||||||
Sbjct 1866 AGCCACGCCCCTTGCTCGGTCGGGATTTTAGTGGACCGTGGTATGGCCA-TGGTCCGGTC 1924
Query 1863 TGAATCTTTTA-TGTTCCAAGGCGAAACCACAAAGAAAGAAATCGCCATGCTATTCCTAG 1921
||| || || || | ||| | || | ||||| ||| |||| ||||| ||| | |
Sbjct 1925 TGAGTCGTTCCGTGGTG-AAG-C-AATG-A-AAAGA--GAAGTCGCAATGCTCTTCGTGG 1977
Query 1922 GAGGTCGAGACGACAGAGAGGCTTTGGCTTACGCTTGGAGGATGGTGGGACAAGAAATGG 1981
| |||| ||||||| | ||||| || | ||||| ||| | ||||| |||||| | ||
Sbjct 1978 GTGGTCCAGACGACCGCGAGGCGTTATCATACGCCTGGCGAATGGTCGGACAACACGTGA 2037
Query 1982 TTCAACTCACGGTCGTTAGATTCGTCCCAAGCCAG-GAAGCTTTAGTCTCAG-CCGGGGA 2039
|| ||||||| || || ||||||||||| | | | |||||| || |||| | ||||| |
Sbjct 2038 TTAAACTCACTGTGGTAAGATTCGTCCCTGGAC-GCGAAGCTCTAATCTC-GTCCGGGAA 2095
Query 2040 AGCCGCGGACG-AGTACGAGAAGGATAAACATGTCGATGAAGAGTCCATCTACGAGTTTA 2098
|| || | || ||||||||| ||| ||||| ||||| || |||| ||||||||| ||||
Sbjct 2096 AGTTGCAG-CGGAGTACGAGAGGGAGAAACAAGTCGACGATGAGTGCATCTACGAATTTA 2154
Query 2099 ACTTCAAGACTATGAATGATCCATCAGTGACTTATGTAGAGAAAGTGGTTAA-GAATGGC 2157
| |||||||| ||||||||| | || || | ||| | || |||||||| || || |||
Sbjct 2155 ATTTCAAGACAATGAATGATTCTTCCGTTAAATATATCGAAAAAGTGGTCAACGA-TGGT 2213
Query 2158 CAAGAAACGATCAC-AGCGATTTTAGAACTGGAAGATAACAATTCTTACGATCTTTACAT 2216
||||| |||||| | | |||| |||| ||||||| ||||||||||| ||||||||| |
Sbjct 2214 CAAGACACGATCTCTA-CGATCAGAGAAATGGAAGACAACAATTCTTATGATCTTTACGT 2272
Query 2217 TGTGGGAAGAGGATATCAAGT-AGAAACACCTGTGACCT-CAGGGTTGA-CAGATTGGAA 2273
||| |||||||||||| || | |||||| || ||||| | | || || | | |||||||
Sbjct 2273 TGTCGGAAGAGGATAT-AACTCAGAAACTCCGGTGAC-TGCCGGTTTAAAC-GATTGGAG 2329
Query 2274 TAGTACTCCGGATTTAGGGATTATAGGCGATACATTAATTTCATCAAACTTCACAATGCA 2333
|||| ||| || |||| | ||||| || |||||| ||| || || |||||||||||
Sbjct 2330 CAGTAGTCCTGAGCTAGGCACAATAGGGGACACATTAGCTTCGTCGAATTTCACAATGCA 2389
Query 2334 AGCTTCGGTTCTT-GTGGTCCAACAATACTCTTCTGCTAACAGACAAACCGCAG 2386
|||||||| || || | |||||||||||| | |||| |||||| | ||||
Sbjct 2390 TGCTTCGGTA-TTAGTCATTCAACAATACTCTGCCACTAAAAGACAAGCTGCAG 2442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94197175885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5