BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31920.1
Length=1779
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900998 jgi|Araly1|900998|Al_scaffold_0004_1648 2431 0.0
> Ahg900998 jgi|Araly1|900998|Al_scaffold_0004_1648
Length=1728
Score = 2431 bits (1316), Expect = 0.0
Identities = 1599/1737 (92%), Gaps = 14/1737 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCCCTCACTCCTGGAGTTCTCTCCAACCTTCTCAATATCGCCGCCGGAAACTCA 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTGCCTCACTCCTGGAGTTCTCTCCAACCTTCTCAATATCGCCGCCGGAAACTCA 60
Query 61 CCTTCTTCGCCGCCATTGTTGTCTTCTCATCGTTCACCACTCCTCCAAGTCATAGAAATC 120
| ||||||||||||||| ||||| || || || |||||||||||||||||||||||||||
Sbjct 61 CTTTCTTCGCCGCCATTATTGTCCTCACACCGGTCACCACTCCTCCAAGTCATAGAAATC 120
Query 121 GTTCCTTGTCTCTCTGACGACCAATGGCGTAGCGAAGCATTCTTCGTCAAAGTCTCTGAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTCCTTGTCTCTCTGACGACCAATGGCGTAGCGAAGCATTCTTCGTCAAAGTCTCTGAC 180
Query 181 TCTCTCCACGCAGCTTACGTCGCCGTTTCCACCGGTGATGACGCTGATCTGATACGTTCC 240
|||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||
Sbjct 181 TCTCTCCACGCAGCTTACGTCGCCGTTTCCGCCGGAGATGACGCTGATCTAATACGTTCC 240
Query 241 GATGAAATTCAGCTAGGACAATTCATTTACATATGCGGTGGTTTACACGTCGAGAAAGGA 300
|||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||
Sbjct 241 GATGAAATTCAGCTAGGACAGTTTGTTTACATATGCGGTGGTTTACACGTTGAGAAAGGA 300
Query 301 TGTCCTGTTCCTGTAATCCGTGGTTTGAAACCAGTCCCTAAGCGGAGGATGTGTGTTGGA 360
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 301 TGTCCTGTTCCTGTAATCCGTGGATTGAAACCAGTTCCTAAGCGGAGGATGTGTGTTGGA 360
Query 361 AACCCTAGCGATCTTTATTCTAGCGATTTGCTGC-TTCCTTTTACTCAGGTCTCTGTTTC 419
|||||||||||||||| ||||||||||||||| | ||| |||||||||||||||||||||
Sbjct 361 AACCCTAGCGATCTTTTTTCTAGCGATTTGCTACATTC-TTTTACTCAGGTCTCTGTTTC 419
Query 420 TCCGACGACGACGAAGAAAAAGAATCTTGTTGAAACAAGGAGATTGAGTTTGGATTCCGC 479
|||||| | | |||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 420 GCCGACGGCCAAGAAGAAGAAGAATCTTGATGAAACAAGGAGATTGAGTTTGGATTCCGC 479
Query 480 GAGAAGGAGTTGTTGGGATCAAACTCCTCCGGTGACTCGTCGTCGTGACGCTGCATTGCT 539
|||||||||||||||||||||||||||||||||||| | || |||||||| ||| ||||
Sbjct 480 GAGAAGGAGTTGTTGGGATCAAACTCCTCCGGTGACCCACCGCCGTGACGCCGCAATGCT 539
Query 540 TCTTTCTTCACCACGTCTTAAATCTAAATTGGTCTTGAATGATAAGAGTCTGCTAAAGAT 599
||||||||||||||||| |||||| ||||||||||||| |||||||| |||||||||||
Sbjct 540 TCTTTCTTCACCACGTCCTAAATCCAAATTGGTCTTGAGTGATAAGAATCTGCTAAAGAA 599
Query 600 TGAGTCCCCATCAAAGTA-CTTTAACTGTGGAAC-CTCTCCTGCCTTAAGGAACAAGAAT 657
||| | ||||||||| | |||||||||| ||| | | ||||| ||||| |||||||||
Sbjct 600 TGAATTGCCATCAAAG-AGCTTTAACTGT--AACAC-C-CCTGCTTTAAGAAACAAGAAT 654
Query 658 GTGGTTAAGCCTGGATCACCTATATCCATGGCTAGTTCTCCGAAAGATGGTATCAAGTCA 717
|||| |||||||| |||||||||||| ||||| | |||||| ||||||||||||||||||
Sbjct 655 GTGGATAAGCCTGCATCACCTATATCAATGGCCAATTCTCCAAAAGATGGTATCAAGTCA 714
Query 718 CCTATATCAAAGCACCTTAACTGCGAAACCCCTGCTTTAAGAAGCAGATATGTGGTCAAG 777
|||||| |||||||||||||| ||||||||| ||||||||||| ||||||||||| |||
Sbjct 715 CCTATACCAAAGCACCTTAACAGCGAAACCCGGGCTTTAAGAAGTAGATATGTGGTGAAG 774
Query 778 CCTGCATCACCTATATCCGTGACTAGGTCTCCTAAAGATGGTATCAAGTCCTTGTCAAAG 837
|||||||||||||| ||| || |||| ||||| ||||||||||||||||| |||||||||
Sbjct 775 CCTGCATCACCTATTTCCATGGCTAGTTCTCCGAAAGATGGTATCAAGTCGTTGTCAAAG 834
Query 838 GCAGTGACTCCTCCGGTTGCGCTTTTTAAGGTGCCTTCAAGTCACATGACTTGGTCTGAT 897
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GCAGTGGCTCCTCCGGTTGCGCTTTTTAAGGTGCCTTCAAGTCACATGACTTGGTCTGAT 894
Query 898 CAAAGAATGTCATGGAGTGGACTCCCAAAAACCATTCAATTGCTCGGAAAGGAAGTTTCA 957
|||||||| | ||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 895 CAAAGAATCTTATGGAATGGACTCCCAAAAACCATTCAATTTCTCGGAAAGGAAGTTTCA 954
Query 958 TCACATAGGCAAGTAGCAGTTTCGGCAGCAGTAAGTGCACTGGAGGAAGCATCTGCCATG 1017
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 955 TCACATAGGCAAGTAGCAGTTTCGGCAGCAGTAAGCGCACTGGAGGAAGCATCTGCCATG 1014
Query 1018 GAGTCTGTTCTATT-TAGTTTGCAGGCCTTTGCCGAGCTGTGTGATTCTACTAAGAAGTT 1076
|||||||||||| | | |||||||| |||||||||||||||||||||| |||||||| ||
Sbjct 1015 GAGTCTGTTCTACTCT-GTTTGCAGACCTTTGCCGAGCTGTGTGATTCAACTAAGAAATT 1073
Query 1077 ATCTACTGGACAAGTAGTG-GCCCGGTTCTTGGACATCTACCACAATACACAGAATACAT 1135
|||| | |||||||||||| ||| | ||||| ||||||||||||| ||||||||||||||
Sbjct 1074 ATCTGCAGGACAAGTAGTGAGCC-GATTCTTAGACATCTACCACAGTACACAGAATACAT 1132
Query 1136 GCAAAGCGGTCCATCGGTTGCTTACTCAAAATCGAAACAACGGCTCGTGTAGATTAGTAG 1195
|||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||
Sbjct 1133 GCAAAGCGGTCCATCGGTTGCTTACTCAAAATGGAAAGAACGGCTCACGTAGATTAGTAG 1192
Query 1196 TAAATAAAAATGCAACATCTTGGGTTCAAGCTGCGGTAGTGACTGGTTTTTCTCAGTTCA 1255
|||| ||||||||| |||||||||||||| |||| |||||||| ||||||||||||||
Sbjct 1193 TAAACAAAAATGCAGCATCTTGGGTTCAAACTGCCGTAGTGACCAATTTTTCTCAGTTCA 1252
Query 1256 ACTTATTTAAAGAGCCTGGAAAGAAAGGTGATGCTGCTGATCATCACTACATTGTTATGC 1315
| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1253 ATTTATTCAAAGAGCCTGGAAAGAAAGAAGATGCTGCTGATCATCACTACATTGTTATAC 1312
Query 1316 AGAACTCATCCGAGAAACTGAACCCCAAGGAGACAACAAGTTCAAGAACCCCATCCTACA 1375
||||||||||||||||| |||| ||||||||||||||||||||||||||||| || ||||
Sbjct 1313 AGAACTCATCCGAGAAAATGAAACCCAAGGAGACAACAAGTTCAAGAACCCCGTCTTACA 1372
Query 1376 AAGGCGCGAAACCGCCTGCAACGAAACATTGTTCTGTTTCAGACCGAAGTAGCTTAGAAG 1435
|||| || ||||||| |||||| ||| || ||||||||||||||||||||||||| ||||
Sbjct 1373 AAGGTGCAAAACCGCATGCAACTAAATATCGTTCTGTTTCAGACCGAAGTAGCTTCGAAG 1432
Query 1436 GTAAAAGCAGTCTGAAGGATTCAACGAGTCTAGCGGATGAGCTAGTCCAAGTTTCCAGCC 1495
|||||||||||||||| || ||| ||||||||||||| ||| ||||||| ||||||||||
Sbjct 1433 GTAAAAGCAGTCTGAATGAGTCAGCGAGTCTAGCGGACGAGTTAGTCCACGTTTCCAGCC 1492
Query 1496 AATGGTTCTTGAAATATTTGGAGAATTCATTGAACAAAGGGTCTTTCTTGGTGAAGACGG 1555
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1493 AATGGTTCTTGATTTATTTGGAGAATTCAGTGAACAAAGGGTCTTTCTTGGTGAAGAAGG 1552
Query 1556 AAGAAACAAATGGAAAAGAGTCTCTTCTCGTCCACCTTAAAGCTTTAAACCATTGGCTCG 1615
||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||
Sbjct 1553 AAGAAACAAATGGAAAAGAGTCTATTTTCGTCCACCTTAAAGCCGTAAACCATTGGCTCG 1612
Query 1616 ATGATCTGAACTTAAACAGAACAGAAACGAACGAGAAAGTCGAAGATTTAAGAAAGAAGC 1675
||| ||||| ||||||| ||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1613 ATGGTCTGATCTTAAACCGAATGGAAACCAACGAGAAAGTCGAAGATTTAAGAAAGAAGC 1672
Query 1676 TGCAACGGTTTCTACTTGAGCATATTGAATCTGTCATTGGGGATACTTACAATATGA 1732
|||||||||||||||||||||||||||||| || ||||||||| | ||||||| |||
Sbjct 1673 TGCAACGGTTTCTACTTGAGCATATTGAATTTGCCATTGGGGA-AGTTACAATTTGA 1728
Score = 99.0 bits (53), Expect = 1e-19
Identities = 68/75 (91%), Gaps = 2/75 (3%)
Strand=Plus/Plus
Query 643 TTAAGGAACAAGA-ATGTGGTTAAGCCTGGATCACCTATATCCATGGCTAGTTCTCCGAA 701
|||| ||| ||| ||||||| ||||||| ||||||||| ||||||||||||||||||||
Sbjct 751 TTAA-GAAGTAGATATGTGGTGAAGCCTGCATCACCTATTTCCATGGCTAGTTCTCCGAA 809
Query 702 AGATGGTATCAAGTC 716
|||||||||||||||
Sbjct 810 AGATGGTATCAAGTC 824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66772199485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5