BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G31920.1 Length=1779 Score E Sequences producing significant alignments: (Bits) Value Ahg900998 jgi|Araly1|900998|Al_scaffold_0004_1648 2431 0.0 > Ahg900998 jgi|Araly1|900998|Al_scaffold_0004_1648 Length=1728 Score = 2431 bits (1316), Expect = 0.0 Identities = 1599/1737 (92%), Gaps = 14/1737 (1%) Strand=Plus/Plus Query 1 ATGGCTTCCCTCACTCCTGGAGTTCTCTCCAACCTTCTCAATATCGCCGCCGGAAACTCA 60 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCTTGCCTCACTCCTGGAGTTCTCTCCAACCTTCTCAATATCGCCGCCGGAAACTCA 60 Query 61 CCTTCTTCGCCGCCATTGTTGTCTTCTCATCGTTCACCACTCCTCCAAGTCATAGAAATC 120 | ||||||||||||||| ||||| || || || ||||||||||||||||||||||||||| Sbjct 61 CTTTCTTCGCCGCCATTATTGTCCTCACACCGGTCACCACTCCTCCAAGTCATAGAAATC 120 Query 121 GTTCCTTGTCTCTCTGACGACCAATGGCGTAGCGAAGCATTCTTCGTCAAAGTCTCTGAC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GTTCCTTGTCTCTCTGACGACCAATGGCGTAGCGAAGCATTCTTCGTCAAAGTCTCTGAC 180 Query 181 TCTCTCCACGCAGCTTACGTCGCCGTTTCCACCGGTGATGACGCTGATCTGATACGTTCC 240 |||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||| Sbjct 181 TCTCTCCACGCAGCTTACGTCGCCGTTTCCGCCGGAGATGACGCTGATCTAATACGTTCC 240 Query 241 GATGAAATTCAGCTAGGACAATTCATTTACATATGCGGTGGTTTACACGTCGAGAAAGGA 300 |||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||| Sbjct 241 GATGAAATTCAGCTAGGACAGTTTGTTTACATATGCGGTGGTTTACACGTTGAGAAAGGA 300 Query 301 TGTCCTGTTCCTGTAATCCGTGGTTTGAAACCAGTCCCTAAGCGGAGGATGTGTGTTGGA 360 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 301 TGTCCTGTTCCTGTAATCCGTGGATTGAAACCAGTTCCTAAGCGGAGGATGTGTGTTGGA 360 Query 361 AACCCTAGCGATCTTTATTCTAGCGATTTGCTGC-TTCCTTTTACTCAGGTCTCTGTTTC 419 |||||||||||||||| ||||||||||||||| | ||| ||||||||||||||||||||| Sbjct 361 AACCCTAGCGATCTTTTTTCTAGCGATTTGCTACATTC-TTTTACTCAGGTCTCTGTTTC 419 Query 420 TCCGACGACGACGAAGAAAAAGAATCTTGTTGAAACAAGGAGATTGAGTTTGGATTCCGC 479 |||||| | | |||||| |||||||||| |||||||||||||||||||||||||||||| Sbjct 420 GCCGACGGCCAAGAAGAAGAAGAATCTTGATGAAACAAGGAGATTGAGTTTGGATTCCGC 479 Query 480 GAGAAGGAGTTGTTGGGATCAAACTCCTCCGGTGACTCGTCGTCGTGACGCTGCATTGCT 539 |||||||||||||||||||||||||||||||||||| | || |||||||| ||| |||| Sbjct 480 GAGAAGGAGTTGTTGGGATCAAACTCCTCCGGTGACCCACCGCCGTGACGCCGCAATGCT 539 Query 540 TCTTTCTTCACCACGTCTTAAATCTAAATTGGTCTTGAATGATAAGAGTCTGCTAAAGAT 599 ||||||||||||||||| |||||| ||||||||||||| |||||||| ||||||||||| Sbjct 540 TCTTTCTTCACCACGTCCTAAATCCAAATTGGTCTTGAGTGATAAGAATCTGCTAAAGAA 599 Query 600 TGAGTCCCCATCAAAGTA-CTTTAACTGTGGAAC-CTCTCCTGCCTTAAGGAACAAGAAT 657 ||| | ||||||||| | |||||||||| ||| | | ||||| ||||| ||||||||| Sbjct 600 TGAATTGCCATCAAAG-AGCTTTAACTGT--AACAC-C-CCTGCTTTAAGAAACAAGAAT 654 Query 658 GTGGTTAAGCCTGGATCACCTATATCCATGGCTAGTTCTCCGAAAGATGGTATCAAGTCA 717 |||| |||||||| |||||||||||| ||||| | |||||| |||||||||||||||||| Sbjct 655 GTGGATAAGCCTGCATCACCTATATCAATGGCCAATTCTCCAAAAGATGGTATCAAGTCA 714 Query 718 CCTATATCAAAGCACCTTAACTGCGAAACCCCTGCTTTAAGAAGCAGATATGTGGTCAAG 777 |||||| |||||||||||||| ||||||||| ||||||||||| ||||||||||| ||| Sbjct 715 CCTATACCAAAGCACCTTAACAGCGAAACCCGGGCTTTAAGAAGTAGATATGTGGTGAAG 774 Query 778 CCTGCATCACCTATATCCGTGACTAGGTCTCCTAAAGATGGTATCAAGTCCTTGTCAAAG 837 |||||||||||||| ||| || |||| ||||| ||||||||||||||||| ||||||||| Sbjct 775 CCTGCATCACCTATTTCCATGGCTAGTTCTCCGAAAGATGGTATCAAGTCGTTGTCAAAG 834 Query 838 GCAGTGACTCCTCCGGTTGCGCTTTTTAAGGTGCCTTCAAGTCACATGACTTGGTCTGAT 897 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 835 GCAGTGGCTCCTCCGGTTGCGCTTTTTAAGGTGCCTTCAAGTCACATGACTTGGTCTGAT 894 Query 898 CAAAGAATGTCATGGAGTGGACTCCCAAAAACCATTCAATTGCTCGGAAAGGAAGTTTCA 957 |||||||| | ||||| |||||||||||||||||||||||| |||||||||||||||||| Sbjct 895 CAAAGAATCTTATGGAATGGACTCCCAAAAACCATTCAATTTCTCGGAAAGGAAGTTTCA 954 Query 958 TCACATAGGCAAGTAGCAGTTTCGGCAGCAGTAAGTGCACTGGAGGAAGCATCTGCCATG 1017 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 955 TCACATAGGCAAGTAGCAGTTTCGGCAGCAGTAAGCGCACTGGAGGAAGCATCTGCCATG 1014 Query 1018 GAGTCTGTTCTATT-TAGTTTGCAGGCCTTTGCCGAGCTGTGTGATTCTACTAAGAAGTT 1076 |||||||||||| | | |||||||| |||||||||||||||||||||| |||||||| || Sbjct 1015 GAGTCTGTTCTACTCT-GTTTGCAGACCTTTGCCGAGCTGTGTGATTCAACTAAGAAATT 1073 Query 1077 ATCTACTGGACAAGTAGTG-GCCCGGTTCTTGGACATCTACCACAATACACAGAATACAT 1135 |||| | |||||||||||| ||| | ||||| ||||||||||||| |||||||||||||| Sbjct 1074 ATCTGCAGGACAAGTAGTGAGCC-GATTCTTAGACATCTACCACAGTACACAGAATACAT 1132 Query 1136 GCAAAGCGGTCCATCGGTTGCTTACTCAAAATCGAAACAACGGCTCGTGTAGATTAGTAG 1195 |||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||| Sbjct 1133 GCAAAGCGGTCCATCGGTTGCTTACTCAAAATGGAAAGAACGGCTCACGTAGATTAGTAG 1192 Query 1196 TAAATAAAAATGCAACATCTTGGGTTCAAGCTGCGGTAGTGACTGGTTTTTCTCAGTTCA 1255 |||| ||||||||| |||||||||||||| |||| |||||||| |||||||||||||| Sbjct 1193 TAAACAAAAATGCAGCATCTTGGGTTCAAACTGCCGTAGTGACCAATTTTTCTCAGTTCA 1252 Query 1256 ACTTATTTAAAGAGCCTGGAAAGAAAGGTGATGCTGCTGATCATCACTACATTGTTATGC 1315 | ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 1253 ATTTATTCAAAGAGCCTGGAAAGAAAGAAGATGCTGCTGATCATCACTACATTGTTATAC 1312 Query 1316 AGAACTCATCCGAGAAACTGAACCCCAAGGAGACAACAAGTTCAAGAACCCCATCCTACA 1375 ||||||||||||||||| |||| ||||||||||||||||||||||||||||| || |||| Sbjct 1313 AGAACTCATCCGAGAAAATGAAACCCAAGGAGACAACAAGTTCAAGAACCCCGTCTTACA 1372 Query 1376 AAGGCGCGAAACCGCCTGCAACGAAACATTGTTCTGTTTCAGACCGAAGTAGCTTAGAAG 1435 |||| || ||||||| |||||| ||| || ||||||||||||||||||||||||| |||| Sbjct 1373 AAGGTGCAAAACCGCATGCAACTAAATATCGTTCTGTTTCAGACCGAAGTAGCTTCGAAG 1432 Query 1436 GTAAAAGCAGTCTGAAGGATTCAACGAGTCTAGCGGATGAGCTAGTCCAAGTTTCCAGCC 1495 |||||||||||||||| || ||| ||||||||||||| ||| ||||||| |||||||||| Sbjct 1433 GTAAAAGCAGTCTGAATGAGTCAGCGAGTCTAGCGGACGAGTTAGTCCACGTTTCCAGCC 1492 Query 1496 AATGGTTCTTGAAATATTTGGAGAATTCATTGAACAAAGGGTCTTTCTTGGTGAAGACGG 1555 |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 1493 AATGGTTCTTGATTTATTTGGAGAATTCAGTGAACAAAGGGTCTTTCTTGGTGAAGAAGG 1552 Query 1556 AAGAAACAAATGGAAAAGAGTCTCTTCTCGTCCACCTTAAAGCTTTAAACCATTGGCTCG 1615 ||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||| Sbjct 1553 AAGAAACAAATGGAAAAGAGTCTATTTTCGTCCACCTTAAAGCCGTAAACCATTGGCTCG 1612 Query 1616 ATGATCTGAACTTAAACAGAACAGAAACGAACGAGAAAGTCGAAGATTTAAGAAAGAAGC 1675 ||| ||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||| Sbjct 1613 ATGGTCTGATCTTAAACCGAATGGAAACCAACGAGAAAGTCGAAGATTTAAGAAAGAAGC 1672 Query 1676 TGCAACGGTTTCTACTTGAGCATATTGAATCTGTCATTGGGGATACTTACAATATGA 1732 |||||||||||||||||||||||||||||| || ||||||||| | ||||||| ||| Sbjct 1673 TGCAACGGTTTCTACTTGAGCATATTGAATTTGCCATTGGGGA-AGTTACAATTTGA 1728 Score = 99.0 bits (53), Expect = 1e-19 Identities = 68/75 (91%), Gaps = 2/75 (3%) Strand=Plus/Plus Query 643 TTAAGGAACAAGA-ATGTGGTTAAGCCTGGATCACCTATATCCATGGCTAGTTCTCCGAA 701 |||| ||| ||| ||||||| ||||||| ||||||||| |||||||||||||||||||| Sbjct 751 TTAA-GAAGTAGATATGTGGTGAAGCCTGCATCACCTATTTCCATGGCTAGTTCTCCGAA 809 Query 702 AGATGGTATCAAGTC 716 ||||||||||||||| Sbjct 810 AGATGGTATCAAGTC 824 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66772199485 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5