BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31930.1
Length=694
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497238 jgi|Araly1|497238|fgenesh2_kg.80__1__AT2G31930.1 689 0.0
Ahg933745 jgi|Araly1|933745|scaffold_401733.1 627 4e-179
> Ahg497238 jgi|Araly1|497238|fgenesh2_kg.80__1__AT2G31930.1
Length=627
Score = 689 bits (373), Expect = 0.0
Identities = 458/498 (92%), Gaps = 10/498 (2%)
Strand=Plus/Plus
Query 7 TAACCATGGGAAGTGAAGTAGTAAACCCGACCAAGCCACGGTTTGATCTAAGCATGTCGA 66
||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||| |
Sbjct 1 TAACCATGGGAGGTGAAGTAATAAACCCAACCAAGCCACGGTTTGATCTAAGCATGTCAA 60
Query 67 AAAGAACTCGAAAACCATGGTCTAGTCTCATCAACGATATGCATCACCATGCAATATGCA 126
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | ||
Sbjct 61 AAAGAACTCGAAAACCATGGTCTAGTCTCATCAACGATACGCATCACCATGAAATCTCCA 120
Query 127 CCCAAAGCTCACAACCAAAACCAGACAAAGAACAAGAGCAAATCGAAGACAAAGAGATTG 186
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGCAAAGCTCACAACCGAAACCAGACAAAGAACAAGAGCAAATCGAAGACAAAGAGATTG 180
Query 187 ATCGTAAGAGTTTGAACAATCTGATGAGATGCGATGAGAAATTGAATGGAGAAGCTGATG 246
|||||||||||||||||||||||||||||| ||| ||||| |||||||||||| |||
Sbjct 181 ATCGTAAGAGTTTGAACAATCTGATGAGATACGAGGAGAAGCCAAATGGAGAAGCTAATG 240
Query 247 TTAACAAC-A-A-GAGCTCTCTAGATCAACATTTCGAG-GATGGCGAGGGGATCAAGCCG 302
|||||||| | | ||||||||||||||||||||||| | |||| |||||||||||||| |
Sbjct 241 TTAACAACGACAAGAGCTCTCTAGATCAACATTTCG-GTGATGACGAGGGGATCAAGCAG 299
Query 303 ACGATGCAATTGGTGGTGAAGAAAGAGAAGCAAGGTGGTTTGAAATTCAAAGGTATGGTG 362
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 300 ACGATGCAATTGGTGGTGAAGAAAGAGAAGCAAGGTGGTGTGAAATTCAAAGGTATGATG 359
Query 363 GGTCGATATGTTAAGGTCTGGAGCGGTTTGATAAAGGCCAAACGTGACCACAAATCGCCG 422
||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| |||||
Sbjct 360 GGTCGATATGTTAAGGTTTGGAGCGGTTTGATAAAGGCCAAGCGTGACCGCAAAACGCCG 419
Query 423 GTCTTTCGGTTTAAAACTTGAAT-C---C-TATATACGTACGTTTCATATACGTGATCAC 477
||||| ||||||||||||||| | | | |||||||||| ||||||| |||||||||||
Sbjct 420 GTCTTACGGTTTAAAACTTGATTTCGATCGTATATACGTATGTTTCATGTACGTGATCAC 479
Query 478 atatatatatattataCG 495
||||| ||||||||||||
Sbjct 480 ATATACATATATTATACG 497
> Ahg933745 jgi|Araly1|933745|scaffold_401733.1
Length=476
Score = 627 bits (339), Expect = 4e-179
Identities = 409/442 (93%), Gaps = 7/442 (2%)
Strand=Plus/Plus
Query 7 TAACCATGGGAAGTGAAGTAGTAAACCCGACCAAGCCACGGTTTGATCTAAGCATGTCGA 66
||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||| |
Sbjct 17 TAACCATGGGAGGTGAAGTAATAAACCCAACCAAGCCACGGTTTGATCTAAGCATGTCAA 76
Query 67 AAAGAACTCGAAAACCATGGTCTAGTCTCATCAACGATATGCATCACCATGCA-ATATGC 125
|||||||||| |||||||||||||||||||||||||||| ||||||||||| | || | |
Sbjct 77 AAAGAACTCGGAAACCATGGTCTAGTCTCATCAACGATACGCATCACCATG-ACATCTCC 135
Query 126 ACCCAAAGCTCACAACCAAAACCAGACAAAGAACAAGAGCAAATCGAAGACAAAGAGATT 185
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 ACGCAAAGCTCACAACCGAAACCAGACAAAGAACAAGAGCAAATCGAAGACAAAGAGATT 195
Query 186 GATCGTAAGAGTTTGAACAATCTGATGAGATGCGATGAGAAATTGAATGGAGAAGCTGAT 245
||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| ||
Sbjct 196 GATCGTAAGAGTTTGAACAATCTGATGAGATACGAGGAGAAGCCAAATGGAGAAGCTAAT 255
Query 246 GTTAACAAC-A-A-GAGCTCTCTAGATCAACATTTCGAG-GATGGCGAGGGGATCAAGCC 301
||||||||| | | ||||||||||||||||||||||| | |||| ||||||||||||||
Sbjct 256 GTTAACAACGACAAGAGCTCTCTAGATCAACATTTCG-GTGATGACGAGGGGATCAAGCA 314
Query 302 GACGATGCAATTGGTGGTGAAGAAAGAGAAGCAAGGTGGTTTGAAATTCAAAGGTATGGT 361
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 315 GACGATGCAATTGGTGGTGAAGAAAGAGAAGCAAGGTGGTGTGAAATTCAAAGGTATGAT 374
Query 362 GGGTCGATATGTTAAGGTCTGGAGCGGTTTGATAAAGGCCAAACGTGACCACAAATCGCC 421
|||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| ||||
Sbjct 375 GGGTCGATATGTTAAGGTTTGGAGCGGTTTGATAAAGGCCAAGCGTGACCGCAAAACGCC 434
Query 422 GGTCTTTCGGTTTAAAACTTGA 443
|||||| |||||||||||||||
Sbjct 435 GGTCTTACGGTTTAAAACTTGA 456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25504231473
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5