BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31940.1
Length=513
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933746 jgi|Araly1|933746|scaffold_401734.1 577 3e-164
Ahg497239 jgi|Araly1|497239|fgenesh2_kg.80__2__AT2G31940.1 560 3e-159
> Ahg933746 jgi|Araly1|933746|scaffold_401734.1
Length=407
Score = 577 bits (312), Expect = 3e-164
Identities = 363/388 (94%), Gaps = 2/388 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAGAGATCAAGAAGGAAGCCCTCCAGTTCCCTTACATCTCTGCGTCTTCGTCTTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 21 ATGGGAAGAGATCAAGAAGGAAGCCCTCCAGTTCCCTTACATCTCTGCGTCTTCGTCCTG 80
Query 61 ATCCTCTTAATGTTCGTAACAATCTCATGGTACGCCAGCTACGAACCAGTTATAGAAGGT 120
||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 81 ATCCTATTAATGTTCGTAACGATCTCATGGTACGCGAGCTACGAACCAGTCATAGAAGGA 140
Query 121 TTTACGTATCAGTTCAAGCTTGCTCTCATGGCTTCTCCTCTGCTTTTGCTCTTAGCCGTT 180
|||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 141 TTTACGGATCAGTTCAAGCTCGCTCTCATGGCTTCTCCTCTGCTTTTGCTCTTGGCCGTC 200
Query 181 CATTTTCTATCCGATGATCA-AGGAGTCGGAGGGATGATGACGTCTTTGATCCATCTGAA 239
|||||||||||| | ||| | |||||| ||||||||||||||||||||||||||||||||
Sbjct 201 CATTTTCTATCCAACGAT-AGAGGAGTAGGAGGGATGATGACGTCTTTGATCCATCTGAA 259
Query 240 CGAAAGAGAGTCTTTGTATAGAGCTGGAGGAACACCGTGGGGAGTGGCCTTCATGCTTGT 299
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 260 CGAAAGAGAGTCTTTGTATAGAGCTGGAGGAACACCATGGGGAGTCGCCTTCATGCTTGT 319
Query 300 CTTTCTCTTCTTCATGGTTTCTTATCAATCTCAGTTTCAAGAACGTTGGTTTCCTCTTAG 359
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 320 CTTTCTCTTCTTCATGGTTTCTTATCAATCTCAATTTCAAGAACGTTGGTTTCCTCTTCG 379
Query 360 ATAATGAGATGACGTCGTTTATTGGTTC 387
| ||||| | ||| || ||| |||||||
Sbjct 380 ACAATGAAACGACATCATTTTTTGGTTC 407
> Ahg497239 jgi|Araly1|497239|fgenesh2_kg.80__2__AT2G31940.1
Length=363
Score = 560 bits (303), Expect = 3e-159
Identities = 344/364 (95%), Gaps = 2/364 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAGAGATCAAGAAGGAAGCCCTCCAGTTCCCTTACATCTCTGCGTCTTCGTCTTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGGAAGAGATCAAGAAGGAAGCCCTCCAGTTCCCTTACATCTCTGCGTCTTCGTCCTG 60
Query 61 ATCCTCTTAATGTTCGTAACAATCTCATGGTACGCCAGCTACGAACCAGTTATAGAAGGT 120
||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 61 ATCCTATTAATGTTCGTAACGATCTCATGGTACGCGAGCTACGAACCAGTCATAGAAGGA 120
Query 121 TTTACGTATCAGTTCAAGCTTGCTCTCATGGCTTCTCCTCTGCTTTTGCTCTTAGCCGTT 180
|||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 121 TTTACGGATCAGTTCAAGCTCGCTCTCATGGCTTCTCCTCTGCTTTTGCTCTTGGCCGTC 180
Query 181 CATTTTCTATCCGATGATCA-AGGAGTCGGAGGGATGATGACGTCTTTGATCCATCTGAA 239
|||||||||||| | ||| | |||||| ||||||||||||||||||||||||||||||||
Sbjct 181 CATTTTCTATCCAACGAT-AGAGGAGTAGGAGGGATGATGACGTCTTTGATCCATCTGAA 239
Query 240 CGAAAGAGAGTCTTTGTATAGAGCTGGAGGAACACCGTGGGGAGTGGCCTTCATGCTTGT 299
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 240 CGAAAGAGAGTCTTTGTATAGAGCTGGAGGAACACCATGGGGAGTCGCCTTCATGCTTGT 299
Query 300 CTTTCTCTTCTTCATGGTTTCTTATCAATCTCAGTTTCAAGAACGTTGGTTTCCTCTTAG 359
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
Sbjct 300 CTTTCTCTTCTTCATGGTTTCGTACCAATCTCAGTTTCAAGAACGTTGGTTTCCTCTTCG 359
Query 360 ATAA 363
||||
Sbjct 360 ATAA 363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18658083021
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5