BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G31945.1

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933747 jgi|Araly1|933747|scaffold_401735.1                        353    6e-97
  Ahg497240 jgi|Araly1|497240|fgenesh2_kg.80__3__AT2G31945.1           322    2e-87


> Ahg933747 jgi|Araly1|933747|scaffold_401735.1
Length=335

 Score =  353 bits (191),  Expect = 6e-97
 Identities = 238/260 (92%), Gaps = 5/260 (2%)
 Strand=Plus/Plus

Query  90   TTTTCTTATCTATTACAACCAATGGATGGAGGCTTGGGAACGATGTTGATGAAGGTTGCC  149
            |||| |||||||||||||| |||||| |||||||| |||||||||||||||||||| |||
Sbjct  1    TTTT-TTATCTATTACAACAAATGGACGGAGGCTTAGGAACGATGTTGATGAAGGTGGCC  59

Query  150  TTATTTGCCCTAGTTCAAGGTTTGGTGTATCTCATCCTCTTGAAATCGTCGAGGGTTTT-  208
            |||||||| || || ||||||||||||||||||||||||| ||||||||||| |||||| 
Sbjct  60   TTATTTGCTCTGGTACAAGGTTTGGTGTATCTCATCCTCTCGAAATCGTCGAAGGTTTTC  119

Query  209  TGCTAGATCGAATTCGTTGA-AAAGGGCTTACAGTTTCCGACCGATGAGGTCAGTCAGCA  267
            | ||| |||||||||||||| ||| ||||||||||||||| ||||||||||| |||||||
Sbjct  120  T-CTACATCGAATTCGTTGAGAAA-GGCTTACAGTTTCCGGCCGATGAGGTCCGTCAGCA  177

Query  268  TCCGTCGGATTCTGGCGGCGCTTCAGGATATTCCTGCTGGCGACGATATGTCTCCTTCAT  327
            |||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct  178  TCCGCCGGATTCTGGCGTCACTTCAGGATATTCCTGCTGGCGACGATATGTCTCCTTCAT  237

Query  328  CTAACGGGTCCTCTTCTTCT  347
            ||||||| || |||||||||
Sbjct  238  CTAACGGCTCTTCTTCTTCT  257


> Ahg497240 jgi|Araly1|497240|fgenesh2_kg.80__3__AT2G31945.1
Length=355

 Score =  322 bits (174),  Expect = 2e-87
 Identities = 214/233 (92%), Gaps = 4/233 (2%)
 Strand=Plus/Plus

Query  117  GGAGGCTTGGGAACGATGTTGATGAAGGTTGCCTTATTTGCCCTAGTTCAAGGTTTGGTG  176
            |||||||| |||||||||||||||||||| ||||||||||| || || ||||||||||||
Sbjct  4    GGAGGCTTAGGAACGATGTTGATGAAGGTGGCCTTATTTGCTCTGGTACAAGGTTTGGTG  63

Query  177  TATCTCATCCTCTTGAAATCGTCGAGGGTTTT-TGCTAGATCGAATTCGTTGA-AAAGGG  234
            ||||||||||||| ||||||||||| |||||| | ||| |||||||||||||| ||| ||
Sbjct  64   TATCTCATCCTCTCGAAATCGTCGAAGGTTTTCT-CTACATCGAATTCGTTGAGAAA-GG  121

Query  235  CTTACAGTTTCCGACCGATGAGGTCAGTCAGCATCCGTCGGATTCTGGCGGCGCTTCAGG  294
            ||||||||||||| ||||||||||| ||||||||||| |||||||||||| | |||||||
Sbjct  122  CTTACAGTTTCCGGCCGATGAGGTCCGTCAGCATCCGCCGGATTCTGGCGTCACTTCAGG  181

Query  295  ATATTCCTGCTGGCGACGATATGTCTCCTTCATCTAACGGGTCCTCTTCTTCT  347
            |||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct  182  ATATTCCTGCTGGCGACGATATGTCTCCTTCATCTAACGGCTCTTCTTCTTCT  234



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19917217458


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5