BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G31953.1

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg952497 jgi|Araly1|952497|scaffold_8000005.1                       420    3e-117
  Ahg901002 jgi|Araly1|901002|Al_scaffold_0004_1652                    416    4e-116


> Ahg952497 jgi|Araly1|952497|scaffold_8000005.1
Length=292

 Score =  420 bits (227),  Expect = 3e-117
 Identities = 250/261 (96%), Gaps = 1/261 (0%)
 Strand=Plus/Plus

Query  1    ATGAAGAGCTCTATGCAGTTAATCTCTACACTCTTCTTCCTAGTCATACTTGTTGTCGCA  60
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  21   ATGAAGAGCTCTATGCAGTTAATCTCTACTCTCTTCTTCCTAGTCATACTTGTTGTCGCA  80

Query  61   CCAGGTATGAAGATGGTTGTTGAAGGACAACCACAATTGTGCGAAACGAAAAGCTTAAAC  120
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  81   CCAGGTATGAAGATGGTTGTTGAAGGACAACCACAACTGTGCGAAACGAAAAGCTTAAAC  140

Query  121  TACAGGGGGTTGTGCTTGAAATGGAGGAGTTGCAAGCGAGTATGTATTAGCGAAGGTTTC  180
            || |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct  141  TATAGGGGGTTGTGCATGAAATGGAGGAATTGCAAGCGAGTATGTATTAGCGAAGGTTTC  200

Query  181  CCTGATGGTCGATGCAAAGGATTCTTCAACAACAAATGTGTTTGCAGGAAGCCTTGTGCT  240
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  201  CCTGATGGTCGATGCAAGGGATTCTTCAACAACAAATGTGTTTGCAGGAAGCCTTGTGCT  260

Query  241  CTT-CTTTCTACCGAAAACTA  260
            ||| ||  ||| | |||||||
Sbjct  261  CTTTCTACCTAACTAAAACTA  281


> Ahg901002 jgi|Araly1|901002|Al_scaffold_0004_1652
Length=252

 Score =  416 bits (225),  Expect = 4e-116
 Identities = 237/243 (98%), Gaps = 0/243 (0%)
 Strand=Plus/Plus

Query  1    ATGAAGAGCTCTATGCAGTTAATCTCTACACTCTTCTTCCTAGTCATACTTGTTGTCGCA  60
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  1    ATGAAGAGCTCTATGCAGTTAATCTCTACTCTCTTCTTCCTAGTCATACTTGTTGTCGCA  60

Query  61   CCAGGTATGAAGATGGTTGTTGAAGGACAACCACAATTGTGCGAAACGAAAAGCTTAAAC  120
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  61   CCAGGTATGAAGATGGTTGTTGAAGGACAACCACAACTGTGCGAAACGAAAAGCTTAAAC  120

Query  121  TACAGGGGGTTGTGCTTGAAATGGAGGAGTTGCAAGCGAGTATGTATTAGCGAAGGTTTC  180
            || |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct  121  TATAGGGGGTTGTGCATGAAATGGAGGAATTGCAAGCGAGTATGTATTAGCGAAGGTTTC  180

Query  181  CCTGATGGTCGATGCAAAGGATTCTTCAACAACAAATGTGTTTGCAGGAAGCCTTGTGCT  240
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CCTGATGGTCGATGCAAGGGATTCTTCAACAACAAATGTGTTTGCAGGAAGCCTTGTGCT  240

Query  241  CTT  243
            |||
Sbjct  241  CTT  243



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9088806118


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5