BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G31957.1

Length=314
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482123 jgi|Araly1|482123|fgenesh2_kg.4__1183__AT2G31957.1         268    1e-71
  Ahg497242 jgi|Araly1|497242|fgenesh2_kg.80__5__AT2G31957.1           156    1e-37


> Ahg482123 jgi|Araly1|482123|fgenesh2_kg.4__1183__AT2G31957.1
Length=180

 Score =  268 bits (145),  Expect = 1e-71
 Identities = 168/179 (94%), Gaps = 2/179 (1%)
 Strand=Plus/Plus

Query  72   AGAGATGGTTGAAGGACAACAAATGTGTGAAGCAAAGAGCTTGGACTGGAAGGGTATGTG  131
            |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct  3    AGAGATGGTTGAAGGACAACAAATGTGTGAAGCAAAGAGCATGAACTGGAAGGGTATGTG  62

Query  132  TCTGAAATGGAGGAATTGTCGCCAAGTATGCATTAGCGAAGGTTTCACTGACGGTCGTTG  191
            | |||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  63   TATGAAGTGGAGGAAATGTCGCCAAGTATGCATTAGCCAAGGTTTCACTGACGGTCGTTG  122

Query  192  CAAAGGATTCACCCGCAAATGCATTTGTAGCAAACCTTGTTTTGTCC-TTCCTAATTAA  249
            |||||||||||||||||| |||||||||| ||||| ||||||||||| ||| |||||||
Sbjct  123  CAAAGGATTCACCCGCAACTGCATTTGTATCAAACTTTGTTTTGTCCCTTC-TAATTAA  180


> Ahg497242 jgi|Araly1|497242|fgenesh2_kg.80__5__AT2G31957.1
Length=293

 Score =  156 bits (84),  Expect = 1e-37
 Identities = 120/135 (89%), Gaps = 12/135 (9%)
 Strand=Plus/Plus

Query  173  GTTTCACTGACGGTCGTTGCAAAGGATTCACCCGCAAATGCATTTGTAGCAAACCTTGTT  232
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct  170  GTTTCACTGACGGTCGTTGCAAAGGATTCACCCGCAACTGCATTTGTAGCAAACTTTGTT  229

Query  233  TTGTCC-TTCCTAATTAAGTTCTTGTTTCTCATTATTTTGATATTAAAATTTTAAAATAA  291
            |||||| ||| |||||||      |||| |  | |||||||||||||| |||||||||||
Sbjct  230  TTGTCCCTTC-TAATTAAA-----GTTT-T--T-ATTTTGATATTAAA-TTTTAAAATAA  278

Query  292  TAACACAATTCATTA  306
            |||||||||||||||
Sbjct  279  TAACACAATTCATTA  293



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11065120810


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5