BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31980.1
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497243 jgi|Araly1|497243|fgenesh2_kg.80__6__AT2G31980.1 843 0.0
Ahg482126 jgi|Araly1|482126|fgenesh2_kg.4__1186__AT2G31980.1 843 0.0
> Ahg497243 jgi|Araly1|497243|fgenesh2_kg.80__6__AT2G31980.1
Length=598
Score = 843 bits (456), Expect = 0.0
Identities = 538/577 (93%), Gaps = 7/577 (1%)
Strand=Plus/Plus
Query 99 TGAAGCCTAAGAAGAAGGCAAAAAGTGAGAAGCAATGGCTACCATGTTGAAGGTCTCTCT 158
|||| ||||||||||| |||||||||||||||||||||| | |||||||||||||||||
Sbjct 1 TGAAACCTAAGAAGAAAACAAAAAGTGAGAAGCAATGGCTGCAATGTTGAAGGTCTCTCT 60
Query 159 TGTATTGTCATTGTTAGGTTTTCTGGTGATCGCTGTCGTGACTCCATCGGCGGCGAACCC 218
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TATATTGTCATTGTTAGGGTTTCTGGTGATCGCTGTCGTGACTCCATCGGCGGCGAACCC 120
Query 219 ATTCAGGAAGAGCGTAGTTCTCGGAGGGAAGTCAGGCGTTCCAAACATTCGGACCAACAG 278
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 ATTCAGGAAGAGCGTAGTTCTCGGAGGGAAGTCAGGTGTTCCAAACATTCGGACCAACAG 180
Query 279 GGAAATTCAACAACTTGGAAGGTACTGCGTGGAGCAATTCAATCAACAAGCACAGAACGA 338
||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 181 GGAGATTCAAGAACTTGGAAGGTACTGCGTGGAGCAATTCAATCAACAAGAACAGACCGA 240
Query 339 GCAAGGAAACATAGGATCCATTGCGAAAACAGACACGGCAATTTCGAATCCATTGCAATT 398
|||||||||||||||||||||||||||||| ||||| || || |||||||||||| ||
Sbjct 241 GCAAGGAAACATAGGATCCATTGCGAAAACGGACACAGCCATGTCGAATCCATTGGTGTT 300
Query 399 TAGCCGAGTAGTGTCTGCTCAGAAACAGGTCGTCGCTGG-ACTCAAATACTATCTAAGGA 457
||||||||| || || ||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 301 TAGCCGAGTTGTATCGGCTCAAAAACAGGTCGTCGCTGGGAC-CAAATACTATCTAAGGA 359
Query 458 TTGAAGTCACTCAACCCAATGGCTCTACCAGGATGTTTGACTCTGTTGTGGTTATTCAAC 517
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 360 TTGAAGTGACTCAACCCAATGGCTCGACCAGGATGTTTGACTCTGTTGTGGTTATTCAAC 419
Query 518 CATGGCTCCATTCTAAGCAGTTGCTCGGTTTCACTCCTGTTGTCAGTCCTGTCTACTAAC 577
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 420 CATGGCTCCATTCTAAGCAGTTGCTAGGTTTCACTCCTGTTGTCAGTCCTATCTACTAAC 479
Query 578 TTTATTTCTTCTTATTC-GACTTAAATTTCCATAATATGATCAAGAAAAGACTAAAAGGT 636
|| ||||||| |||| | ||||||||||||||||||||||| ||||||||||||||||
Sbjct 480 TTCATTTCTT---ATTCAGCCTTAAATTTCCATAATATGATCATGAAAAGACTAAAAGGT 536
Query 637 GTATGATACAAAGCTATTAAGAATGGGTTAATAGTTG 673
||||||||| ||||||||||||||||||| || ||||
Sbjct 537 GTATGATACGAAGCTATTAAGAATGGGTTTAT-GTTG 572
> Ahg482126 jgi|Araly1|482126|fgenesh2_kg.4__1186__AT2G31980.1
Length=598
Score = 843 bits (456), Expect = 0.0
Identities = 538/577 (93%), Gaps = 7/577 (1%)
Strand=Plus/Plus
Query 99 TGAAGCCTAAGAAGAAGGCAAAAAGTGAGAAGCAATGGCTACCATGTTGAAGGTCTCTCT 158
|||| ||||||||||| |||||||||||||||||||||| | |||||||||||||||||
Sbjct 1 TGAAACCTAAGAAGAAAACAAAAAGTGAGAAGCAATGGCTGCAATGTTGAAGGTCTCTCT 60
Query 159 TGTATTGTCATTGTTAGGTTTTCTGGTGATCGCTGTCGTGACTCCATCGGCGGCGAACCC 218
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TATATTGTCATTGTTAGGGTTTCTGGTGATCGCTGTCGTGACTCCATCGGCGGCGAACCC 120
Query 219 ATTCAGGAAGAGCGTAGTTCTCGGAGGGAAGTCAGGCGTTCCAAACATTCGGACCAACAG 278
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 ATTCAGGAAGAGCGTAGTTCTCGGAGGGAAGTCAGGTGTTCCAAACATTCGGACCAACAG 180
Query 279 GGAAATTCAACAACTTGGAAGGTACTGCGTGGAGCAATTCAATCAACAAGCACAGAACGA 338
||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 181 GGAGATTCAAGAACTTGGAAGGTACTGCGTGGAGCAATTCAATCAACAAGAACAGACCGA 240
Query 339 GCAAGGAAACATAGGATCCATTGCGAAAACAGACACGGCAATTTCGAATCCATTGCAATT 398
|||||||||||||||||||||||||||||| ||||| || || |||||||||||| ||
Sbjct 241 GCAAGGAAACATAGGATCCATTGCGAAAACGGACACAGCCATGTCGAATCCATTGGTGTT 300
Query 399 TAGCCGAGTAGTGTCTGCTCAGAAACAGGTCGTCGCTGG-ACTCAAATACTATCTAAGGA 457
||||||||| || || ||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 301 TAGCCGAGTTGTATCGGCTCAAAAACAGGTCGTCGCTGGGAC-CAAATACTATCTAAGGA 359
Query 458 TTGAAGTCACTCAACCCAATGGCTCTACCAGGATGTTTGACTCTGTTGTGGTTATTCAAC 517
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 360 TTGAAGTGACTCAACCCAATGGCTCGACCAGGATGTTTGACTCTGTTGTGGTTATTCAAC 419
Query 518 CATGGCTCCATTCTAAGCAGTTGCTCGGTTTCACTCCTGTTGTCAGTCCTGTCTACTAAC 577
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 420 CATGGCTCCATTCTAAGCAGTTGCTAGGTTTCACTCCTGTTGTCAGTCCTATCTACTAAC 479
Query 578 TTTATTTCTTCTTATTC-GACTTAAATTTCCATAATATGATCAAGAAAAGACTAAAAGGT 636
|| ||||||| |||| | ||||||||||||||||||||||| ||||||||||||||||
Sbjct 480 TTCATTTCTT---ATTCAGCCTTAAATTTCCATAATATGATCATGAAAAGACTAAAAGGT 536
Query 637 GTATGATACAAAGCTATTAAGAATGGGTTAATAGTTG 673
||||||||| ||||||||||||||||||| || ||||
Sbjct 537 GTATGATACGAAGCTATTAAGAATGGGTTTAT-GTTG 572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26838533568
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5