BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G31980.1 Length=729 Score E Sequences producing significant alignments: (Bits) Value Ahg497243 jgi|Araly1|497243|fgenesh2_kg.80__6__AT2G31980.1 843 0.0 Ahg482126 jgi|Araly1|482126|fgenesh2_kg.4__1186__AT2G31980.1 843 0.0 > Ahg497243 jgi|Araly1|497243|fgenesh2_kg.80__6__AT2G31980.1 Length=598 Score = 843 bits (456), Expect = 0.0 Identities = 538/577 (93%), Gaps = 7/577 (1%) Strand=Plus/Plus Query 99 TGAAGCCTAAGAAGAAGGCAAAAAGTGAGAAGCAATGGCTACCATGTTGAAGGTCTCTCT 158 |||| ||||||||||| |||||||||||||||||||||| | ||||||||||||||||| Sbjct 1 TGAAACCTAAGAAGAAAACAAAAAGTGAGAAGCAATGGCTGCAATGTTGAAGGTCTCTCT 60 Query 159 TGTATTGTCATTGTTAGGTTTTCTGGTGATCGCTGTCGTGACTCCATCGGCGGCGAACCC 218 | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TATATTGTCATTGTTAGGGTTTCTGGTGATCGCTGTCGTGACTCCATCGGCGGCGAACCC 120 Query 219 ATTCAGGAAGAGCGTAGTTCTCGGAGGGAAGTCAGGCGTTCCAAACATTCGGACCAACAG 278 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 121 ATTCAGGAAGAGCGTAGTTCTCGGAGGGAAGTCAGGTGTTCCAAACATTCGGACCAACAG 180 Query 279 GGAAATTCAACAACTTGGAAGGTACTGCGTGGAGCAATTCAATCAACAAGCACAGAACGA 338 ||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 181 GGAGATTCAAGAACTTGGAAGGTACTGCGTGGAGCAATTCAATCAACAAGAACAGACCGA 240 Query 339 GCAAGGAAACATAGGATCCATTGCGAAAACAGACACGGCAATTTCGAATCCATTGCAATT 398 |||||||||||||||||||||||||||||| ||||| || || |||||||||||| || Sbjct 241 GCAAGGAAACATAGGATCCATTGCGAAAACGGACACAGCCATGTCGAATCCATTGGTGTT 300 Query 399 TAGCCGAGTAGTGTCTGCTCAGAAACAGGTCGTCGCTGG-ACTCAAATACTATCTAAGGA 457 ||||||||| || || ||||| ||||||||||||||||| || ||||||||||||||||| Sbjct 301 TAGCCGAGTTGTATCGGCTCAAAAACAGGTCGTCGCTGGGAC-CAAATACTATCTAAGGA 359 Query 458 TTGAAGTCACTCAACCCAATGGCTCTACCAGGATGTTTGACTCTGTTGTGGTTATTCAAC 517 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 360 TTGAAGTGACTCAACCCAATGGCTCGACCAGGATGTTTGACTCTGTTGTGGTTATTCAAC 419 Query 518 CATGGCTCCATTCTAAGCAGTTGCTCGGTTTCACTCCTGTTGTCAGTCCTGTCTACTAAC 577 ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 420 CATGGCTCCATTCTAAGCAGTTGCTAGGTTTCACTCCTGTTGTCAGTCCTATCTACTAAC 479 Query 578 TTTATTTCTTCTTATTC-GACTTAAATTTCCATAATATGATCAAGAAAAGACTAAAAGGT 636 || ||||||| |||| | ||||||||||||||||||||||| |||||||||||||||| Sbjct 480 TTCATTTCTT---ATTCAGCCTTAAATTTCCATAATATGATCATGAAAAGACTAAAAGGT 536 Query 637 GTATGATACAAAGCTATTAAGAATGGGTTAATAGTTG 673 ||||||||| ||||||||||||||||||| || |||| Sbjct 537 GTATGATACGAAGCTATTAAGAATGGGTTTAT-GTTG 572 > Ahg482126 jgi|Araly1|482126|fgenesh2_kg.4__1186__AT2G31980.1 Length=598 Score = 843 bits (456), Expect = 0.0 Identities = 538/577 (93%), Gaps = 7/577 (1%) Strand=Plus/Plus Query 99 TGAAGCCTAAGAAGAAGGCAAAAAGTGAGAAGCAATGGCTACCATGTTGAAGGTCTCTCT 158 |||| ||||||||||| |||||||||||||||||||||| | ||||||||||||||||| Sbjct 1 TGAAACCTAAGAAGAAAACAAAAAGTGAGAAGCAATGGCTGCAATGTTGAAGGTCTCTCT 60 Query 159 TGTATTGTCATTGTTAGGTTTTCTGGTGATCGCTGTCGTGACTCCATCGGCGGCGAACCC 218 | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TATATTGTCATTGTTAGGGTTTCTGGTGATCGCTGTCGTGACTCCATCGGCGGCGAACCC 120 Query 219 ATTCAGGAAGAGCGTAGTTCTCGGAGGGAAGTCAGGCGTTCCAAACATTCGGACCAACAG 278 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 121 ATTCAGGAAGAGCGTAGTTCTCGGAGGGAAGTCAGGTGTTCCAAACATTCGGACCAACAG 180 Query 279 GGAAATTCAACAACTTGGAAGGTACTGCGTGGAGCAATTCAATCAACAAGCACAGAACGA 338 ||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 181 GGAGATTCAAGAACTTGGAAGGTACTGCGTGGAGCAATTCAATCAACAAGAACAGACCGA 240 Query 339 GCAAGGAAACATAGGATCCATTGCGAAAACAGACACGGCAATTTCGAATCCATTGCAATT 398 |||||||||||||||||||||||||||||| ||||| || || |||||||||||| || Sbjct 241 GCAAGGAAACATAGGATCCATTGCGAAAACGGACACAGCCATGTCGAATCCATTGGTGTT 300 Query 399 TAGCCGAGTAGTGTCTGCTCAGAAACAGGTCGTCGCTGG-ACTCAAATACTATCTAAGGA 457 ||||||||| || || ||||| ||||||||||||||||| || ||||||||||||||||| Sbjct 301 TAGCCGAGTTGTATCGGCTCAAAAACAGGTCGTCGCTGGGAC-CAAATACTATCTAAGGA 359 Query 458 TTGAAGTCACTCAACCCAATGGCTCTACCAGGATGTTTGACTCTGTTGTGGTTATTCAAC 517 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 360 TTGAAGTGACTCAACCCAATGGCTCGACCAGGATGTTTGACTCTGTTGTGGTTATTCAAC 419 Query 518 CATGGCTCCATTCTAAGCAGTTGCTCGGTTTCACTCCTGTTGTCAGTCCTGTCTACTAAC 577 ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 420 CATGGCTCCATTCTAAGCAGTTGCTAGGTTTCACTCCTGTTGTCAGTCCTATCTACTAAC 479 Query 578 TTTATTTCTTCTTATTC-GACTTAAATTTCCATAATATGATCAAGAAAAGACTAAAAGGT 636 || ||||||| |||| | ||||||||||||||||||||||| |||||||||||||||| Sbjct 480 TTCATTTCTT---ATTCAGCCTTAAATTTCCATAATATGATCATGAAAAGACTAAAAGGT 536 Query 637 GTATGATACAAAGCTATTAAGAATGGGTTAATAGTTG 673 ||||||||| ||||||||||||||||||| || |||| Sbjct 537 GTATGATACGAAGCTATTAAGAATGGGTTTAT-GTTG 572 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26838533568 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5