BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31985.1
Length=957
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482128 jgi|Araly1|482128|fgenesh2_kg.4__1188__AT2G31985.1 1397 0.0
Ahg470551 jgi|Araly1|470551|fgenesh2_kg.1__505__AT1G05510.1 604 3e-172
Ahg949381 jgi|Araly1|949381|scaffold_801268.1 113 2e-24
> Ahg482128 jgi|Araly1|482128|fgenesh2_kg.4__1188__AT2G31985.1
Length=964
Score = 1397 bits (756), Expect = 0.0
Identities = 904/972 (93%), Gaps = 23/972 (2%)
Strand=Plus/Plus
Query 1 CTCTTTGCAATTACTCTGTTT-TTTGCTTGTTTAAAAGTTTTTGAAGAGGAAGAGCAAAT 59
||||||||| ||||||||||| |||| |||||||||||||||||||||| ||||||||||
Sbjct 1 CTCTTTGCAGTTACTCTGTTTGTTTGGTTGTTTAAAAGTTTTTGAAGAGAAAGAGCAAAT 60
Query 60 CATTGATTAG-GAAAATGGAGAAAGCAGTTCACTCGTCGACCACGTCTGGACCGGCGGTT 118
||||||| | |||||||||||| ||||||||||| || || ||||||||||||||||||
Sbjct 61 AATTGATT-GAGAAAATGGAGAAGGCAGTTCACTCTTCCACAACGTCTGGACCGGCGGTT 119
Query 119 CCAGGGGAGACAACAAAGACCGGAACCTCCATAATTGACACTGCAGCCTCCGCTGTTCAA 178
||||||||| ||||||||||||||||||||||||||||| |||| |||||||| ||||||
Sbjct 120 CCAGGGGAGGCAACAAAGACCGGAACCTCCATAATTGACGCTGCGGCCTCCGCCGTTCAA 179
Query 179 AGTTTTGCACCGGTTAACCAAATCCACCAACATCTCTGCGCGTTCCATTTCTATGCTGAC 238
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 180 AGTTTTGCACCTGTTAACCAAATCCACCAACACCTCTGCGCGTTCCATTTCTATGCGGAC 239
Query 239 GACATGGCACGACAAGTAGAGGCTCACCATTTCTGCAGTCACGTGAACGAAGAGATGCGT 298
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 240 GACATGGCACGACAAGTAGAGGCTCACCATTTCTGCAGTCACGTGAATGAAGAGATGCGT 299
Query 299 CAGTGTTTGATCTACGACGGTCCGGATGCAAACGCTCGTCTAATTGGATTGGAGTACATA 358
||||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 300 CAGTGTTTGATATACGACGGTCCAGATGCAAACGCTCGTCTGATCGGATTGGAGTACATA 359
Query 359 GTGTCAGAGAAGCTGTTCATGACTTTGCCTGACGAAGAGAAGAAGCTTTGGCACTCGCAC 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GTGTCAGAGAAGCTGTTCATGACTTTGCCTGACGAAGAGAAGAAGCTTTGGCACTCGCAC 419
Query 419 GAGTGGGAAGTGAAAGGAGGGTTCTTGTTCATGCCTGGTGTTCCAGGTGCCATTCAGCGT 478
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAGTGGGAAGTGAAAGGAGGTTTCTTGTTCATGCCTGGTGTTCCAGGTGCCATTCAGCGT 479
Query 479 AAAGATCTTGATAAAGTCGCTAAGACTTATGGGAAAGTTTTCCATTTTTGGCAAGTTGAT 538
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 480 CAAGATCTTGATAAAGTCGCTAAGACTTATGGCAAAGTTTTCCATTTTTGGCAAGTTGAT 539
Query 539 TTGGGCCATGAGCTTCCCATTGGTTTACCTAATGTCATGATGGCTGTTACACGCGATGGC 598
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 540 TTGGGCCATGAGCTTCCCATTGGTTTACCTAATGTCATGATGGCTGTTACCCGCGATGGC 599
Query 599 CAGCTTTTCCACGAGATGATTCAGGAGGCAGAGAAGCGGTTTGGGGTATCGGTAGAGGGG 658
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 600 CAGCTTTTCCATGAGATGATTCAGGAGGCAGAGAAGCGGTTTGGGGTATCGGTTGAGGGG 659
Query 659 GAGAGGGACTCACGGGCGTATATGTCTGGACCTGAGCTCGGGATCCATCCATTGGCGAAT 718
|||||||||||| ||||||||||| | || || ||||| |||||||||||||||||||||
Sbjct 660 GAGAGGGACTCAAGGGCGTATATGACAGGGCCCGAGCTGGGGATCCATCCATTGGCGAAT 719
Query 719 GGAGGAGGCAAAGGGATGAAACTAGAGCTACGAGAGGTCGATATCAAGCCGGTTGAGTCT 778
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 720 GGAGGAGGCAAAGGGATGAAACTAGAGCTGCGAGAGGTCGATATCAAGCCGGTTGAGTCT 779
Query 779 GTCGGCAGCGTCTTTGTCTGAGTTTACTTA---AA-ACCTC-T-AA-TA-A-T---GCCC 826
|||||||||||||||||||||||||| ||| || |||| | || || | | | ||
Sbjct 780 GTCGGCAGCGTCTTTGTCTGAGTTTA-TTACCTAAGACCTTATTAAGTATAATAATGGCC 838
Query 827 TCAAAGCAAGCAATGTATGTTTTGGTAAACACAAAACGTACGGAACTAGACAACAAGATT 886
||||||||||||||| |||||||||||||||||| ||||| | ||||||||||||||
Sbjct 839 ACAAAGCAAGCAATGTGTGTTTTGGTAAACACAAAGCGTACAGTACTAGACAACAAGAC- 897
Query 887 ACTTAAAATAGTTTGGATT-ATTTCTTTGTGGATCTTATTTATAATTAGTAATAAGATAA 945
|||||||||||||||| || ||||||||| | || |||||||| | |||||||| ||||
Sbjct 898 ACTTAAAATAGTTTGGTTTTATTTCTTTG-G-ATTTTATTTAT--T-AGTAATAAAATAA 952
Query 946 GAAATAATATCT 957
||||||| ||||
Sbjct 953 GAAATAACATCT 964
> Ahg470551 jgi|Araly1|470551|fgenesh2_kg.1__505__AT1G05510.1
Length=890
Score = 604 bits (327), Expect = 3e-172
Identities = 555/667 (83%), Gaps = 8/667 (1%)
Strand=Plus/Plus
Query 115 GGTTCCAGGGGAGACAACAAAGACCGGAACCTCCATAATTGACACTGCAGCCTCCGCTGT 174
||||||||| ||| |||| ||||||||||||||||| ||||||| ||||| || || ||
Sbjct 105 GGTTCCAGGAGAGCCAACGAAGACCGGAACCTCCATGGTTGACACGGCAGCTTCAGCCGT 164
Query 175 TCAAAGTTTTGCACCGGTTAACCAAATCCACCAACATCTCTGCGCGTTCCATTTCTATGC 234
||||| || || ||| ||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 165 ACAAAGCTTCGCTCCGATTAACCAAATCCACCAACATCTCTGCGCGTTTCATTTTTATGC 224
Query 235 -TGACGACATGGCACGACAAGTAGAGGCTCACCATTTCTGCAGTCACGTGAACGAAGAGA 293
| | |||||| | |||||||| ||||| |||||||| ||| ||||| | |||||||| |
Sbjct 225 AT-ATGACATGACCCGACAAGTGGAGGCACACCATTTTTGCGGTCACATCAACGAAGACA 283
Query 294 TGCGTCAGTGTTTGATCTACGACGGTCCGGATGCAAACGCTCGTCTAATTGGATTGGAGT 353
||||||||||| |||||||||||||||| ||||| ||||||||||| || || |||||||
Sbjct 284 TGCGTCAGTGTCTGATCTACGACGGTCCTGATGCCAACGCTCGTCTGATCGGTTTGGAGT 343
Query 354 ACATAGTGTCAGAGAAGCTGTTCATGACTTTGCCTGACGAAGAGAAGAAGCTTTGGCACT 413
|||| ||| |||||||||| || ||||| |||||||| || ||||||||||||||||||
Sbjct 344 ACATTGTGACAGAGAAGCTCTTTATGACATTGCCTGATGATGAGAAGAAGCTTTGGCACA 403
Query 414 CGCACGAGTGGGAAGTGAAAGGAGGGTTCTTGTTCATGCCTGGTGTTCCAGGTGCCATTC 473
| |||||||||||||| |||||||| |||||||||||||| |||||||||| || ||||
Sbjct 404 CTCACGAGTGGGAAGTTAAAGGAGGCTTCTTGTTCATGCCCGGTGTTCCAGAAGCTATTC 463
Query 474 AGCGTAAAGATCTTGATAAAGTCGCTAAGACTTATGGGAAAGTTTTCCATTTTTGGCAAG 533
| || ||||||| || |||||||| ||||||||||||||||||| |||||| |||||||
Sbjct 464 AACGCCAAGATCTCGAAAAAGTCGCCAAGACTTATGGGAAAGTTTACCATTTCTGGCAAG 523
Query 534 TTGATTTGGGCCATGAGCTTCCCATTGGTTTACCTAATGTCATGATGGCTGTTACACGCG 593
| ||| ||| ||||| ||||||||||| || |||||| |||||||||| ||||| || |
Sbjct 524 TCGATAAGGGGCATGACCTTCCCATTGGCTTGCCTAATATCATGATGGCCGTTACTCGAG 583
Query 594 ATGGCCAGCTTT-TCCACGAGATGATTCA-GGAGGCAGAGAAGCGGTTTGGGGTATCGGT 651
| || || |||| ||| || ||||| || |||| | || |||| |||||| |||||| |
Sbjct 584 ACGGTCAACTTTATCCG-GAAATGAT-CAAGGAGACGGAAAAGCAGTTTGGAGTATCGAT 641
Query 652 AGAGGGGGAGAGGGACTCACGGGCGTATATGTCTGGACCTGAGC-TCGGGATCCATCCAT 710
|| ||| || || ||| |||| |||||| ||||| || | | ||||||||||| |
Sbjct 642 GGAAAAGGAAAGAGAGTCAAGGGCTTATATGAAGGGACCAGACCAT-GGGATCCATCCCT 700
Query 711 TGGCGAATGGAGGAGGCAAAGGGATGAAACTAGAGCTACGAGAGGTCGATATCAAGCCGG 770
|||| ||||||||||||||||| | || || ||| | |||||||| || || |||||||
Sbjct 701 TGGCAAATGGAGGAGGCAAAGGCCTCAAGCTGGAGGTGCGAGAGGTTGACATAAAGCCGG 760
Query 771 TTGAGTC 777
| |||||
Sbjct 761 TCGAGTC 767
> Ahg949381 jgi|Araly1|949381|scaffold_801268.1
Length=203
Score = 113 bits (61), Expect = 2e-24
Identities = 91/106 (86%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 116 GTTCCAGGGGAGACAACAAAGACCGGAACCTCCATAATTGACACTGCAGCCTCCGCTGTT 175
|||||||| ||| |||| ||||||| ||||||||| ||||||| ||||| || || ||
Sbjct 34 GTTCCAGGAGAGCCAACGAAGACCGAAACCTCCATGGTTGACACGGCAGCTTCAGCCGTA 93
Query 176 CAAAGTTTTGCACCGGTTAACCAAATCCACCAACATCTCTGCGCGT 221
||||| || || ||| ||||||||||||||||||||||||||||||
Sbjct 94 CAAAGCTTCGCTCCGATTAACCAAATCCACCAACATCTCTGCGCGT 139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35530558644
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5