BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31990.1
Length=1611
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344960 jgi|Araly1|344960|fgenesh1_pg.C_scaffold_4001302 1910 0.0
Ahg952502 jgi|Araly1|952502|scaffold_8000010.1 893 0.0
> Ahg344960 jgi|Araly1|344960|fgenesh1_pg.C_scaffold_4001302
Length=1377
Score = 1910 bits (1034), Expect = 0.0
Identities = 1284/1400 (92%), Gaps = 35/1400 (3%)
Strand=Plus/Plus
Query 67 ATGGAAGAAAAAACCAACCActcttttacttttcctttctcttctctccatctctctgct 126
||||| ||||||| |||||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct 1 ATGGAGGAAAAAA-CAACCACTCTTTTACTTTTCCTCTCTCTCCTCACCATCTCTCTGCT 59
Query 127 tctccttcgtctctccCAAGACAAAATCATACTCATCACCACCACCAAAACCACAGCCAC 186
|||||||||||||||||||||||||||||||||||||||||||||| | | || ||||
Sbjct 60 TCTCCTTCGTCTCTCCCAAGACAAAATCATACTCATCACCACCACC---A-C-CA-CCAC 113
Query 187 CACTGGA-ACCGATCATCAACGCAGTCACAAATCTTCTGAGGACGATACGTGTCTCGGAC 245
| | || |||||||||||||| || | | | ||| |||||||||| |
Sbjct 114 CTC-CGACTCCGATCATCAACGCCGT--C--A----C----GAC---CCGTGTCTCGGTC 157
Query 246 GCTACATATATATCCACAATCTACCTTCTCGATTCAATCTTGAAATCATCAAAGATTGTA 305
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || |
Sbjct 158 GCTACATATATATCCATAATCTACCTTCTCGATTCAATCTTGAAATCATTAAAGACTGCA 217
Query 306 AGTCTATTACAAGACCAAAGGACAAAATCAGTATGTGTAAGTATCTCGACAACTCCGGAT 365
||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 218 AGTCTATTACAAGACCAAAAGACAAGATCAGTATGTGTAAGTATCTCGAAAACTCCGGAA 277
Query 366 TCGGACCTTTGATCGGCGGTAAAAGTTCTGACTACTCTCCGAGCTGGTACGCTACTAATC 425
|||||||||| ||||||||| | |||||||||||||||||||||||||||| |||||||
Sbjct 278 TCGGACCTTTAATCGGCGGTGACGGTTCTGACTACTCTCCGAGCTGGTACGCGACTAATC 337
Query 426 AGTTCATGCTCGAAGTGATTTTTCACGAGAAAATGAAGAGTTACGAGTGCTTGACGAGAA 485
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 338 AGTTCATGCTCGAAGTGATTTTTCACGAGAAAATGAAGAGATATGAGTGCTTGACGAGAA 397
Query 486 ATTCTTCACTGGCTTCAGCTATTTACGTACCTTATTATGCTGGCCTCGATTTCCGGCGAC 545
| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 398 ACTCGTCGCTGGCTTCAGCTATTTACGTACCTTATTATGCTGGTCTCGATTTCCGGCGAC 457
Query 546 ATTTACGGCGGCGTAACGTTGCTGCGAGAGACGCCGCCGGGAAGGAACTTGTTAAATGGC 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 ATTTACGGCGGCGTAACGTTGCTGCGAGAGACGCCGCCGGGAAGGAACTTGTTAAATGGC 517
Query 606 TCAAGAAGCAACCTCAGTGGAAAGATATGTCAGGTAAAAACCATTTCCTTGTAACCGGTC 665
| || || |||||||||||||||||||||||||||| | |||||||||| ||||||||||
Sbjct 518 TTAAAAATCAACCTCAGTGGAAAGATATGTCAGGTAGAGACCATTTCCTCGTAACCGGTC 577
Query 666 GGATTTCACGAGATTTCCGGCGAAACTCCGGCAGTAGGTCAGCATGGGGAACCAACTTCA 725
|||||||||||||||||||||||||||||| || || ||| ||||||||||||||||| |
Sbjct 578 GGATTTCACGAGATTTCCGGCGAAACTCCGACAATAAGTCCGCATGGGGAACCAACTTTA 637
Query 726 TGCTCTTATCTGAGTCGCTAAACCTCACTTTCCTCAGCATTGAACGAAGTCTAACGAGCC 785
|||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 638 TGCTCTTACCGGAGTCGCTAAACCTCACTTTCCTCACCATTGAACGAAGTCTAACGAGCC 697
Query 786 ACAACGAGTTCGCAATTCCTTATCCTACTTACTTTCACCCTACGTCAACCCCCGAGATCC 845
|||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 698 ACAACGAGTTTGCAATTCCTTATCCCACTTACTTTCACCCTACGTCAACCTCCGAGATCC 757
Query 846 TTCAG-TGGCAAGAAAAGATCAGGCTTACAAACCGGACGGTCCTCTTCTCATTTGCCGGA 904
|| | |||||||| ||||||||||| || ||||||||| ||||||||||||| ||||||
Sbjct 758 -TCCGCTGGCAAGACAAGATCAGGCTCACTAACCGGACGATCCTCTTCTCATTCGCCGGA 816
Query 905 GCTCAAAGACCAAGCAGAAACCAGAACGGTGTGGTTCGCACTGAAGTTATAAAACAATGC 964
||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 817 GCTCAAAGACCAATTAGAAACCAGAACGGTTTGGTTCGCACTCAAGTTATAAAACAATGC 876
Query 965 AAGAGTTCATCTAAAACGTGTAGGTTTCTTGACTGTGACGTCAATG-CAA-A-TAGCTGT 1021
||||| |||||||| ||||||||||||||||||||||||||||| | ||| | ||||||
Sbjct 877 AAGAGCTCATCTAATACGTGTAGGTTTCTTGACTGTGACGTCAAAGCCAATATTAGCTGC 936
Query 1022 GATGATCCGATCAGTCTGATGAAACTTTTCGAGAGTTCGA-CTTTCTGCTTACAACCGCC 1080
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||
Sbjct 937 GATGATCCGATCAGTCTGATGAAACTTTTCGAGAGTTC-AGTTTTCTGCTTACAACCACC 995
Query 1081 GGGTGATTCGTTGACCAGAAAATCGGTATTTGATTCAATCTTGGCTGGTTGTATACCGGT 1140
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 996 GGGTGATTCGTTAACCAGAAGATCGGTATTTGATTCAATCTTGGCTGGTTGTATTCCGGT 1055
Query 1141 TTTCTTTAACCAAGGAAGTGCATACAAGCAATATTTATGGCACATACCTAAGAATAGTAG 1200
||||||||||||||| || ||||||||||||||| |||||||||||||||||| | |||
Sbjct 1056 TTTCTTTAACCAAGGTAGCGCATACAAGCAATATAGATGGCACATACCTAAGAACAATAG 1115
Query 1201 CAAATATTCTGTTTATATAACGGTTAAGGAGCTGAGAACCGGTGGAAAGAACAAAATCGA 1260
| ||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1116 CGAATATTCGGTTTATATACCGGTTAAGGAGCTGAGAACCGGGGGAAAGAACAAAATCGA 1175
Query 1261 AGAGATTTTGCGTGGAATACCAAATGAGAGAGTGGTTGGTATGAGAGAAAACGTAATAAG 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 AGAGATTTTGCGTGGAATACCAAATGAGAGAGTGGTTGGTATGAGAGAAAACGTAATAAG 1235
Query 1321 ATTGATTCCGAAGATTGTGTAT-GCTAAACCAAACCGGAACAAACCGGATGGAGAGATTC 1379
|||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct 1236 ATTGATTCCGAAGATTGTGTATAG-TAAACCAAACCGGAACAAACCAGATGGAGAGATTC 1294
Query 1380 TTGAAGATTCTTTTGATGTTGCTGTGAAGGGAGTGCT-AGAGAGAATAGAAGGGATAAGG 1438
|||||||| |||||||||||||||||||||||||| | | || |||||||||||||||||
Sbjct 1295 TTGAAGATGCTTTTGATGTTGCTGTGAAGGGAGTGGTTA-AGGGAATAGAAGGGATAAGG 1353
Query 1439 AGAAACGAATTCAAAACTGA 1458
||||| |||||||| |||||
Sbjct 1354 AGAAAAGAATTCAAGACTGA 1373
> Ahg952502 jgi|Araly1|952502|scaffold_8000010.1
Length=829
Score = 893 bits (483), Expect = 0.0
Identities = 582/629 (93%), Gaps = 9/629 (1%)
Strand=Plus/Plus
Query 851 TGGCAAGAAAAGATCAGGCTTACAAACCGGACGGTCCTCTTCTCATTTGCCGGAGCTCAA 910
|||||||| ||||||||||| || ||||||||| ||||||||||||| ||||||||||||
Sbjct 195 TGGCAAGACAAGATCAGGCTCACTAACCGGACGATCCTCTTCTCATTCGCCGGAGCTCAA 254
Query 911 AGACCAAGCAGAAACCAGAACGGTGTGGTTCGCACTGAAGTTATAAAACAATGCAAGAGT 970
||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 255 AGACCAATTAGAAACCAGAACGGTTTGGTTCGCACTCAAGTTATAAAACAATGCAAGAGC 314
Query 971 TCATCTAAAACGTGTAGGTTTCTTGACTGTGACGTCAATG-CAA-A-TAGCTGTGATGAT 1027
|||||||| ||||||||||||||||||||||||||||| | ||| | |||||| ||||||
Sbjct 315 TCATCTAATACGTGTAGGTTTCTTGACTGTGACGTCAAAGCCAATATTAGCTGCGATGAT 374
Query 1028 CCGATCAGTCTGATGAAACTTTTCGAGAGTTCGA-CTTTCTGCTTACAACCGCCGGGTGA 1086
|||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||
Sbjct 375 CCGATCAGTCTGATGAAACTTTTCGAGAGTTC-AGTTTTCTGCTTACAACCACCGGGTGA 433
Query 1087 TTCGTTGACCAGAAAATCGGTATTTGATTCAATCTTGGCTGGTTGTATACCGGTTTTCTT 1146
|||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 434 TTCGTTAACCAGAAGATCGGTATTTGATTCAATCTTGGCTGGTTGTATTCCGGTTTTCTT 493
Query 1147 TAACCAAGGAAGTGCATACAAGCAATATTTATGGCACATACCTAAGAATAGTAGCAAATA 1206
||||||||| || ||||||||||||||| |||||||||||||||||| | |||| ||||
Sbjct 494 TAACCAAGGTAGCGCATACAAGCAATATAGATGGCACATACCTAAGAACAATAGCGAATA 553
Query 1207 TTCTGTTTATATAACGGTTAAGGAGCTGAGAACCGGTGGAAAGAACAAAATCGAAGAGAT 1266
||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 554 TTCGGTTTATATACCGGTTAAGGAGCTGAGAACCGGGGGAAAGAACAAAATCGAAGAGAT 613
Query 1267 TTTGCGTGGAATACCAAATGAGAGAGTGGTTGGTATGAGAGAAAACGTAATAAGATTGAT 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 TTTGCGTGGAATACCAAATGAGAGAGTGGTTGGTATGAGAGAAAACGTAATAAGATTGAT 673
Query 1327 TCCGAAGATTGTGTAT-GCTAAACCAAACCGGAACAAACCGGATGGAGAGATTCTTGAAG 1385
|||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||
Sbjct 674 TCCGAAGATTGTGTATAG-TAAACCAAACCGGAACAAACCAGATGGAGAGATTCTTGAAG 732
Query 1386 ATTCTTTTGATGTTGCTGTGAAGGGAGTGCT-AGAGAGAATAGAAGGGATAAGGAGAAAC 1444
|| |||||||||||||||||||||||||| | | || ||||||||||||||||||||||
Sbjct 733 ATGCTTTTGATGTTGCTGTGAAGGGAGTGGTTA-AGGGAATAGAAGGGATAAGGAGAAAA 791
Query 1445 GAATTCAAAACTGATTAGCAAATTTTATA 1473
|||||||| ||||| || | || ||||||
Sbjct 792 GAATTCAAGACTGAGTAACTAAGTTTATA 820
Score = 222 bits (120), Expect = 5e-57
Identities = 153/169 (91%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 628 AGATATGTCAGGTAAAAACCATTTCCTTGTAACCGGTCGGATTTCACGAGATTTCCGGCG 687
|||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 17 AGATATGTCAGGTAGAGACCATTTCCTCGTAACCGGTCGGATTTCACGAGATTTCCGGCG 76
Query 688 AAACTCCGGCAGTAGGTCAGCATGGGGAACCAACTTCATGCTCTTATCTG-AGTCGCTAA 746
|||||||| || || ||| ||||||||||||||| ||||||||| | | | |||| ||||
Sbjct 77 AAACTCCGACAATAAGTCCGCATGGGGAACCAACGTCATGCTCT-ACCCGGAGTCTCTAA 135
Query 747 ACCTCACTTTCCTCAGCATTGAACGAAGTCTAACGAGCCACAACGAGTT 795
||||||||||||||| ||| ||||| |||||||||||||||||||||||
Sbjct 136 ACCTCACTTTCCTCACCATGGAACGTAGTCTAACGAGCCACAACGAGTT 184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60373038325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5