BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32010.1
Length=2745
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482131 jgi|Araly1|482131|fgenesh2_kg.4__1191__AT2G32010.1 3397 0.0
Ahg333866 jgi|Araly1|333866|fgenesh1_pg.C_scaffold_1000431 918 0.0
> Ahg482131 jgi|Araly1|482131|fgenesh2_kg.4__1191__AT2G32010.1
Length=2647
Score = 3397 bits (1839), Expect = 0.0
Identities = 2075/2186 (95%), Gaps = 27/2186 (1%)
Strand=Plus/Plus
Query 552 AATGAGAGACGATAAAACCAAGAAAAGCAAGTTGTCATGGTCCAAGAAGATGGTGAGGAA 611
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 478 AATGAGAGACGATAAATCCAAGAAAAACAAGTTGTCATGGTCCAAGAAGATGGTGAGGAA 537
Query 612 ATGGTTCAACATCAAAAGCAAAACTGAAAAGTTTCAAGCAGATGTTTCTCTTCCTCAAGG 671
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 538 ATGGTTCAACATCAAAAGCAAAACTGAAAAGTTTCAAGCAGATGTTTCTGATCCTCAAGG 597
Query 672 AGTTGAAGTTGAGCACAGAAACAGCTTCTCAGAGAGAGAGCCCTGCACAATCAAGAAGAG 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AGTTGAAGTTGAGCACAGAAACAGCTTCTCAGAGAGAGAGCCCTGCACAATCAAGAAGAG 657
Query 732 CAAAACTGAAAAACTCAATAAGAACTGGGAGCAGCAAGCTAGACAAAGGAAAATGAACTA 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CAAAACTGAAAAACTCAATAAGAACTGGGAGCAGCAAGCTAGACAAAGGAAAATGAACTA 717
Query 792 TGAAAATCCCAGAATCATTGATGTCCAAAACCACAGCATCTTCGTAGCTACATGGAACGT 851
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 718 TGAAAATCCCAGAATCATTGATGTCCAAAACCACAGCATCTTTGTAGCTACATGGAACGT 777
Query 852 TGCTGGACGCTCTCCTCCTGAAGATTTAAACCTCGACGAATGGCTTCATTCTTCAGCTCC 911
|||||||||||||||||| |||||| ||||||||||||||||||||||||| || |||||
Sbjct 778 TGCTGGACGCTCTCCTCCGGAAGATCTAAACCTCGACGAATGGCTTCATTCCTCTGCTCC 837
Query 912 TGCAGATATATACGTTCTCGGGTTCCAAGAGATTGTTCCTCTTAATGCTGGTAATGTTCT 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TGCAGATATATACGTTCTCGGGTTCCAAGAGATTGTTCCTCTTAATGCTGGTAATGTTCT 897
Query 972 TGGAGCTGAAGACAATGGTCCTGCTAAGAAATGGCATTCACTCATCAGGAAAACGCTCAA 1031
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 898 TGGAGCTGAAGACAATGGTCCTGCTAAGAAATGGCATTCCCTCATCAGGAAAACACTCAA 957
Query 1032 TAACCTTCCCGG-AGCAAGCAGTG-CATGCCATACTCCATCGCCTATTCCTGTCCCCATT 1089
|||||| ||||| | ||||||||| | || |||||||| |||||||||||||||||||||
Sbjct 958 TAACCTCCCCGGGA-CAAGCAGTGTC-TGTCATACTCCGTCGCCTATTCCTGTCCCCATT 1015
Query 1090 GCAGAGATTGATGCTGACTTCTCAGGATCTTCAAGGCAAAAGAACGAGACTTTCTTCAAC 1149
||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1016 GCAGAGATTGATGCTGATTTCTCTGGATCTTCGAGGCAAAAGAACGAGACTTTCTTCAAC 1075
Query 1150 AGAAGATCTTTCCAGACGCCGAGCGTATGGAGTATGGAGGAGAATGACCCTTCGATCTCA 1209
||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1076 AGAAGGTCTTTCCAGACCCCGAGCGTATGGAGTATGGAAGAGAATGACCCTTCTATCTCA 1135
Query 1210 CAACCACGGCTTGACCGTCGTTTCAGCGTGTGTGATCGCGTATTCTTCAGTCATAGACCA 1269
|| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1136 CAGCCACGGCTTGAACGTCGTTTCAGCGTGTGTGATCGCGTATTCTTTAGTCATAGACCA 1195
Query 1270 AGTGATTTTGACCCGAGCTTCAGGTGTGGTCACAGGCCTAGTGATTACTCAAGAAGGCCT 1329
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1196 AGTGATTTTGACCCGAGCTTCAGGTGTAGTCACAGGCCTAGTGATTACTCAAGAAGGCCT 1255
Query 1330 AGTGATTACTCTAGACCGAGTGATTATTACTCTAGGCCGAGTAACTATTCTCGGCCTAGT 1389
||||||||||||||||| || |||||||||||||||||||| || |||||||||||||||
Sbjct 1256 AGTGATTACTCTAGACCAAGCGATTATTACTCTAGGCCGAGCAATTATTCTCGGCCTAGT 1315
Query 1390 GATGTTTCCAGGTGGGGCTCCTCGGATGATGATAACGGCCCAGGGGATTCTCCAAGCACA 1449
||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1316 GATGTTTCCCGGTGGGGCTCCTCGGATGATGATAACGGCCCAGGGGATTCTCCCAGTACA 1375
Query 1450 TTTTTGAATTCACCGGGGTCATTTCTTGGTTCTGCAGCAAAC-GAAAACGGTTACAGAAC 1508
|| ||||||||||||||||||| ||||||||||||| | | | ||||||||||||||||
Sbjct 1376 TTCTTGAATTCACCGGGGTCATGTCTTGGTTCTGCATCGA-CTGAAAACGGTTACAGAAT 1434
Query 1509 CCCGTGGAACTCATCGCAGTACTGTTTGGTCGCAAGTAAACAGATGGTTGGTATCTTTTT 1568
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 CTCGTGGAACTCATCTCAGTACTGTTTGGTCGCAAGTAAACAGATGGTTGGTATCTTTTT 1494
Query 1569 AACCATTTGGGTGAAAAGCGAGTTACGAGAACACGTCAAGAACATGAAAGTATCTTGTGT 1628
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 AACAATTTGGGTGAAAAGCGAGTTACGAGAACACGTCAAGAACATGAAAGTATCTTGTGT 1554
Query 1629 TGGTAGAGGATTAATGGGTTATCTCGGAAATAAGGGATCAATCTCAATTAGTATGTTGCT 1688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TGGTAGAGGATTAATGGGTTATCTCGGAAATAAGGGATCAATCTCAATTAGTATGTTGCT 1614
Query 1689 TCATCAAACAAGCTTCTGCTTTGTGTGCACCCATTTGACCTCGGGACAAAAAGAAGGTGA 1748
|||||||||||| |||||||| || ||||| |||||||||||||||||||||| ||||||
Sbjct 1615 TCATCAAACAAGTTTCTGCTTCGTCTGCACTCATTTGACCTCGGGACAAAAAGGAGGTGA 1674
Query 1749 TGAGCTAAGGAGAAACTCCGATGTCATGGAGATACTCAAGAAAACAAGGTTTCCTCGAGT 1808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 TGAGCTAAGGAGAAACTCCGATGTCATGGAGATACTCAAGAAAACAAGGTTTCCTCGAGT 1734
Query 1809 CCAGAGTTCTGCGGACGAGAAGTCCCCTGAGAATATCCTTCAGCATGATCGGGTAATATG 1868
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 CCAGAGTTCTGCAGACGAGAAGTCCCCTGAGAATATCCTTCAGCATGATCGGGTAATATG 1794
Query 1869 GCTCGGGGATCTGAACTACCGAATAGCACTCTCTTACCGATCCGCAAAAGCACTTGTCGA 1928
||||||||||||||||||||| ||||| ||||||||||||||||||||||| || |||||
Sbjct 1795 GCTCGGGGATCTGAACTACCGGATAGCGCTCTCTTACCGATCCGCAAAAGCGCTAGTCGA 1854
Query 1929 GATGCAAAACTGGAGGGCATTACTAGAGAACGATCAGTTACGGATAGAGCAGAAACGAGG 1988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1855 GATGCAAAACTGGAGGGCATTACTAGAGAACGATCAGTTACGGATAGAGCAGAAACGAGG 1914
Query 1989 ACATGTGTTTAAAGGATGGAACGAAGGAAAGATATACTTCCCACCAACTTACAAATACTC 2048
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1915 GCATGTGTTTAAAGGATGGAACGAAGGAAAGATTTACTTCCCACCAACTTACAAATACTC 1974
Query 2049 AAATAACTCGGATAGATATGCAGGAGGTGATTTGCATCCAAAGGAGAAACGTCGTACTCC 2108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1975 AAATAACTCGGATAGATATGCAGGAGGTGATTTGCATCCAAAGGAGAAACGTCGTACTCC 2034
Query 2109 TGCTTGGTGTGATCGAATACTATGGCATGGAGAAGGACTACATCAGTTATCTTATGTAAG 2168
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2035 TGCTTGGTGTGATCGGATACTATGGCATGGAGAAGGTCTACATCAGTTATCTTATGTAAG 2094
Query 2169 AGGGGAGTCACGGTTTTCTGATCATAGACCGGTTTATGGCATATTCAGCGCAGAGGTTGA 2228
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2095 AGGGGAGTCGCGGTTTTCAGATCATAGACCGGTTTATGGCATATTCAGCGCAGAGGTTGA 2154
Query 2229 GTCAAATCACAAGAGATCAAAGCGAACCAATAGTCACTCCACTGCACGGGTCGAAGCTGA 2288
||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 2155 GTCAAATCACAAGAGATTAAAGCGAACCACGAGTCATTCCACTGCACGGGTCGAAGCTGA 2214
Query 2289 AGAACTCTTACCTTACGCCCGCGGATACACCGAGCTAACATTTTTCTAAAAGAAAATTGA 2348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2215 AGAACTCTTACCTTACGCCCGCGGATACACCGAGCTAACATTTTTCTAAAAGAAAATCGA 2274
Query 2349 AAAGCCTTCTTCTTTACGG-TCAATTAAAGttttttttGTTCGAATGTTGAAGCCTTGAG 2407
|||| | | |||||||| | ||||||||| |||||| | ||| |||||||||||||||
Sbjct 2275 AAAGAAGT-T-CTTTACGGGTAAATTAAAGTGTTTTTT-TACGAGTGTTGAAGCCTTGAG 2331
Query 2408 GAGTG--GATGATGGAGACATTTCATTGCTCCTTTTAACACAAA-GGAAACAA-ATAACA 2463
||||| ||||||||||||||||||||||||||||||||||||| |||||||| | || |
Sbjct 2332 GAGTGATGATGATGGAGACATTTCATTGCTCCTTTTAACACAAAAGGAAACAAGA-AA-A 2389
Query 2464 GGTGTATAAAGGATTGTAATTTTGTCTTGGTTAATAGAATTTCGCATATCAAACCGGTTC 2523
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2390 GGTGTATAAAGGATTGTAATTTTGTCTTGGTTAACAGAATTTCGCATATCAAACCGGTTT 2449
Query 2524 TTTCATTTATCATGTCAGGAGT-AGGAGTTAAAAGTAAA-TTTTACA-GTGTAGGATTAT 2580
||| |||||||||| |||| | | | |||| | ||| |||| ||| ||||||||
Sbjct 2450 TTTTATTTATCATGGGAGGACTTAC-ATTTAATA--AAACTTTTTTTTGTGCAGGATTAT 2506
Query 2581 TAAACTGACAGATGGAAGGttttttttAGTTCTTCATCAGTCTTTTTAGGGATAGTTTTT 2640
||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||
Sbjct 2507 TAAACTGACAGATGGAAGGTTTTTTA-A-TTC---ATCAGTCTTTTTAGGGATAGATTTT 2561
Query 2641 GATAATATTATTATTGTAAATTGAAGTGTGTTCCCGAGACAATGATAGTGTAATGCTTGT 2700
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2562 GATAATATCATTATTGTAAATTGAAGTGTGTTCCCGAGACAATGATAGTGTAATGCTTGT 2621
Query 2701 TGTATAAGTAAGATTTAGCCGTTTAA 2726
||||||||||||||||||||||||||
Sbjct 2622 TGTATAAGTAAGATTTAGCCGTTTAA 2647
Score = 291 bits (157), Expect = 3e-77
Identities = 380/474 (80%), Gaps = 70/474 (15%)
Strand=Plus/Plus
Query 75 tctctttctctttcATAGAAGAAGAAGAAGATTCAGGACCTAAGTAGAAAAGCTTAAACC 134
||||| |||| | | ||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 45 TCTCTCTCTCATAGA-AGAAGAAGAAGAAGAATCAGGACC-AAGTAGAAAAGCTTAAACC 102
Query 135 -ACCACTCTCTCTTC-AA-ATC--A-CAC-TTTTGTTTGTTTCCTCTCTCTCCAAAATCT 187
| |||||||||||| || ||| | ||| ||| |||| || ||||||||||||||||
Sbjct 103 AAGCACTCTCTCTTCAAAGATCAAATCACACTTT-TTTGGTT--TCTCTCTCCAAAATCT 159
Query 188 TTCTCATTGTCTTCTTTGCCTCCTCCTTCAAGAACT-CTTGTCTCTTCCAACAACTTTTT 246
| ||||||||| | || ||||||||| | |||||||||| |||| || ||||
Sbjct 160 TCCTCATTGTC--C--TG-------CTTCAAGAA-TCCTTGTCTCTT-CAAC-AC-TTTT 204
Query 247 TC-CTTCTTATTCTGAAAACCAATCTTCA---C-T-TCTCATTTGTCTC--------AAA 292
|| ||||||||||| |||||||||||||| | | ||||||| ||||| |||
Sbjct 205 TCTCTTCTTATTCTAAAAACCAATCTTCACTTCTTCTCTCATTCGTCTCTGTTTGGGAAA 264
Query 293 ACACT-ATACCCATTTC-CTAATTCCTGTCCCTGAGAGCATTAGTAGAGAGACACAAAAC 350
| ||| | ||||||||| || |||||||| || | | ||| |||| |||||
Sbjct 265 A-ACTAAAACCCATTTCTCT-ATTCCTGT--CT-----C----G--GAGTGACA-AAAAC 308
Query 351 AC-TTTAATCCTA-ATCCAACTTGTCTTTAC-TTTAGCTTCTGTCTGATTCAATCAAAGG 407
| |||||||| | | ||||||||||||| | ||||||||||||||||||| | | |||
Sbjct 309 CCTTTTAATCCGAGA-CCAACTTGTCTTTGCTTTTAGCTTCTGTCTGATTC-A-C--AGG 363
Query 408 ACAAGAAAGAAGCCAAATCTTGTCAATTCTTTTTAAACAGTGATTCAACTAAAAACCCCA 467
| |||||| ||| ||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 364 AGAAGAAACAAGTCAATTCTTGTCAATTATTTTTAAACAGTGATTCAACTAAAAACCCCA 423
Query 468 AATTAGTT-GATTTGATCTCTATTGTCTTCttttttt-tGGATGGATTGAGTCT 519
|||| ||| |||||||||||| ||||||| ||||||| ||||||||||||||||
Sbjct 424 AATTTGTTCGATTTGATCTCTGTTGTCTTTTTTTTTTCTGGATGGATTGAGTCT 477
Score = 73.1 bits (39), Expect = 1e-11
Identities = 49/54 (91%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 1 ATCCTCTGCTTTTACTTTGCCGTTTCACTGAGAACGAGGCTCGCTCACTCActc 54
|||| |||||||||||||||||||||||||||||||||||| ||| ||| |||
Sbjct 1 ATCCACTGCTTTTACTTTGCCGTTTCACTGAGAACGAGGCTTACTCTCTCTCTC 54
> Ahg333866 jgi|Araly1|333866|fgenesh1_pg.C_scaffold_1000431
Length=1653
Score = 918 bits (497), Expect = 0.0
Identities = 732/849 (86%), Gaps = 2/849 (0%)
Strand=Plus/Plus
Query 1477 GGTTCTGCAGCAAACGAAAACGGTTACAGAACCCCGTGGAACTCATCGCAGTACTGTTTG 1536
||||||||||||||||| || || || |||| |||||||||||| || ||||| |||||
Sbjct 793 GGTTCTGCAGCAAACGACAATGGATATAGAATCCCGTGGAACTCTTCACAGTATTGTTTA 852
Query 1537 GTCGCAAGTAAACAGATGGTTGGTATCTTTTTAACCATTTGGGTGAAAAGCGAGTTACGA 1596
|| || || ||||| ||||| ||| |||| |||| |||||||||||||||||| || ||
Sbjct 853 GTTGCTAGCAAACAAATGGTGGGTGTCTTCCTAACTATTTGGGTGAAAAGCGAGCTAAGA 912
Query 1597 GAACACGTCAAGAACATGAAAGTATCTTGTGTTGGTAGAGGATTAATGGGTTATCTCGGA 1656
|||||||| |||||||||||||||||||||||||| |||||| | ||||||||||| |||
Sbjct 913 GAACACGTTAAGAACATGAAAGTATCTTGTGTTGGCAGAGGACTGATGGGTTATCTTGGA 972
Query 1657 AATAAGGGATCAATCTCAATTAGTATGTTGCTTCATCAAACAAGCTTCTGCTTTGTGTGC 1716
||||||||||| |||||||| || |||||||| |||||||||||||| ||||| || ||
Sbjct 973 AATAAGGGATCGATCTCAATAAGCATGTTGCTCCATCAAACAAGCTTTTGCTTCGTCTGT 1032
Query 1717 ACCCATTTGACCTCGGGACAAAAAGAAGGTGATGAGCTAAGGAGAAACTCCGATGTCATG 1776
||||| ||||| |||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1033 ACCCACTTGACTTCGGGACAAAAAGAAGGTGATGAGCTAAAGAGAAACTCTGATGTCATG 1092
Query 1777 GAGATACTCAAGAAAACAAGGTTTCCTCGAGTCCAGAGTTCTGCGGACGAGAAGTCCCCT 1836
||||||||||||||||| || |||||||| || ||||||| | ||| || |||||||||
Sbjct 1093 GAGATACTCAAGAAAACGAGATTTCCTCGCGTTAAGAGTTCAGAGGAAGAAAAGTCCCCT 1152
Query 1837 GAGAATATCCTTCAGCATGATCGGGTAATATGGCTCGGGGATCTGAACTACCGAATAGCA 1896
|||||||||||||||||||| |||||||||||||| || ||||| |||||||| ||||||
Sbjct 1153 GAGAATATCCTTCAGCATGACCGGGTAATATGGCTTGGCGATCTAAACTACCGTATAGCA 1212
Query 1897 CTCTCTTACCGATCCGCAAAAGCACTTGTCGAGATGCAAAACTGGAGGGCATTACTAGAG 1956
|| ||||||||||| || |||||||| || |||||||| || ||||| || ||||||||
Sbjct 1213 CTGTCTTACCGATCTGCCAAAGCACTCGTTGAGATGCAGAATTGGAGAGCTTTACTAGAA 1272
Query 1957 AACGATCAGTTACGGATAGAGCAGAAACGAGGACATGTGTTTAAAGGATGGAACGAAGGA 2016
||||| |||||| | || ||||| ||| |||| ||||| ||||| |||||||| ||||||
Sbjct 1273 AACGACCAGTTAAGAATTGAGCAAAAAAGAGGCCATGTTTTTAAGGGATGGAATGAAGGA 1332
Query 2017 AAGATATACTTCCCACCAACTTACAAATACTCAAATAACTCGGATAGATATGCAGGAGGT 2076
||||| || ||||||||||| ||||| ||||| | ||||| ||||||||| | ||||
Sbjct 1333 AAGATTTATTTCCCACCAACCTACAAGTACTCGAGGAACTCAGATAGATATTCTGGAGAC 1392
Query 2077 GATTTGCATCCAAAGGAGAAACGTCGTACTCCTGCTTGGTGTGATCGAATACTATGGCAT 2136
||| ||||||| |||||||||||||| |||||||||||||||||| | ||| | ||| |
Sbjct 1393 GATCTGCATCCCAAGGAGAAACGTCGCACTCCTGCTTGGTGTGATAGGATATTGTGGTTT 1452
Query 2137 GGAGAAGGACTACATCAGTTATCTTATGTAAGAGGGGAGTCACGGTTTTCTGATCATAGA 2196
|| |||||||| ||||||||||| || |||||||| ||||||||||| || |||||||||
Sbjct 1453 GGTGAAGGACTGCATCAGTTATCATACGTAAGAGGAGAGTCACGGTTCTCGGATCATAGA 1512
Query 2197 CCGGTTTATGGCATATTCAGCGCAGAGGTTGAGTCAAATCACAAGAGATCAAAGCGAACC 2256
||||| |||||||| ||| | ||||||||||||||| ||| || || | |||||||||
Sbjct 1513 CCGGTCTATGGCATTTTCTGTGCAGAGGTTGAGTCAGCTCATAATAGGTTAAAGCGAAC- 1571
Query 2257 AAT-AGTCACTCCACTGCACGGGTCGAAGCTGAAGAACTCTTACCTTACGCCCGCGGATA 2315
|| ||| |||||||| |||||||| ||||||||||||||||||||||| |||| |||||
Sbjct 1572 AACGAGTTACTCCACTTCACGGGTCCAAGCTGAAGAACTCTTACCTTACTCCCGTGGATA 1631
Query 2316 CACCGAGCT 2324
|||||||||
Sbjct 1632 CACCGAGCT 1640
Score = 627 bits (339), Expect = 2e-178
Identities = 601/725 (83%), Gaps = 28/725 (4%)
Strand=Plus/Plus
Query 580 AAGTTGTCATGGTCCAAGAAGATGGTGAGGAAATGGTTCAACATCAAAAGCAAAACTGAA 639
||| || ||||||||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 4 AAGCTGGCATGGTCCAAGAAGATGGTTAGGAAATGGTTCAATATCAAAAGCAAAACAGAG 63
Query 640 AAGTTTCAAGCAGATGTTTCT-CTTCCT-CAAGGAGTTGAAGTTGAGCACAGAAACAGCT 697
||||||||||||||| | || ||| || | |||||||||| ||||| |||| ||||
Sbjct 64 GAGTTTCAAGCAGATGATCCTACTT-CTGC-TCGAGTTGAAGTAGAGCATAGAAGTAGCT 121
Query 698 TCTCAG-AGAGAGAGC-CC-TGCACAATCAAGAAGAGCAAAACTGAAAAACTCAATAAGA 754
|||||| |||| ||| || | |||||||||||| | ||||||||| ||||||| |||||
Sbjct 122 TCTCAGCTGAGAAAGCACCTTCCACAATCAAGAATACCAAAACTGAGAAACTCAGTAAGA 181
Query 755 ACTGGGAGCAGCAAGCTAGACAAAGGAAAATGAACTATGAAAATCCCAGAATCATTGATG 814
||||||||||||||||| | ||||||| |||||| ||||| ||||| || ||||||||||
Sbjct 182 ACTGGGAGCAGCAAGCTCGGCAAAGGAGAATGAATTATGAGAATCCTAGGATCATTGATG 241
Query 815 TCCAAAACCACAGCATCTTCGTAGCTACATGGAACGTTGCTGGACGCTCTCCTCCTGAAG 874
|||||||| |||||||||| ||||||||||||||||| |||||||||||||||||| ||
Sbjct 242 TCCAAAACTACAGCATCTTTGTAGCTACATGGAACGTAGCTGGACGCTCTCCTCCTTCAG 301
Query 875 ATTTAAACCTCGACGAATGGCTTCATTCTTCAGCTCCTGCAGATATATACGTTCTCGGGT 934
| |||||||| || || ||||||||||| |||||||||||||||||||| || ||||| |
Sbjct 302 ACTTAAACCTTGATGAGTGGCTTCATTCATCAGCTCCTGCAGATATATATGTACTCGGAT 361
Query 935 TCCAAGAGATTGTTCCTCTTAATGCTGGTAATGTTCTTGGAGCTGAAGACAATGGTCCTG 994
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 362 TCCAAGAGATTGTTCCTCTTAATGCTGGAAATGTCCTTGGAGCTGAAGACAATGGACCTG 421
Query 995 CTAAGAAATGGCAT-TCACTCATCAGGAAAACGCTCAATAACCTTCCCGGAGCAAG---- 1049
|| ||||||||| | || || ||| | |||||||||||||||| || ||| | ||
Sbjct 422 CTCAGAAATGGC-TCTCTCTTATCCGTAAAACGCTCAATAACCGACCAGGAACTAGTGGA 480
Query 1050 -C-AGTGCATGCCATACTCCATCGCCTATTCCTGTCCCCATTGCAGAGATTGATGCTGAC 1107
| || | | || || || || ||||| ||||| || || |||||| ||||||||||
Sbjct 481 ACCAGCGGTTATCACACGCCTTCCCCTATCCCTGTGCCTATGGCAGAGCTTGATGCTGAT 540
Query 1108 TTCTCAGGATCTTCAAGGCAAAAGAACGAGACTTTCTTCAACAGAAGATCTTTCCAGACG 1167
||||| ||||| |||||||||||||| ||||||||| ||||| | ||||| |||||
Sbjct 541 TTCTCTGGATCCACAAGGCAAAAGAACTCTACTTTCTTCCACAGACGGTCTTTTCAGACC 600
Query 1168 CCGAGCGTATGGAGTATGGAGGAGAATGACCCTTCGATCTCA-CAACCACGG-CTTGACC 1225
||||| || | | ||||| | ||| ||||| || || || ||| || |||||||
Sbjct 601 CCGAG--TA-GTAC-ATGGA--A---TGATCCTTCCAT-TCCTCAGCCA-GGTCTTGACC 649
Query 1226 GTCGTTTCAGCGTGTGTGATCGCGTATTCTTCAGTCATAGACCAAGTGATTTTGACCCGA 1285
||||||||||||| ||||| || ||||||||||| || || ||||||||||| ||||| |
Sbjct 650 GTCGTTTCAGCGTCTGTGACCGTGTATTCTTCAGCCACAGGCCAAGTGATTTCGACCCAA 709
Query 1286 GCTTC 1290
| |||
Sbjct 710 GTTTC 714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103567376155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5