BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32020.1
Length=707
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933764 jgi|Araly1|933764|scaffold_401752.1 918 0.0
> Ahg933764 jgi|Araly1|933764|scaffold_401752.1
Length=594
Score = 918 bits (497), Expect = 0.0
Identities = 564/596 (95%), Gaps = 5/596 (1%)
Strand=Plus/Plus
Query 2 TCTAAAACAATCACTAATCCTAAATGGAGATGGACTCAGAAGAAACT-AATCCAATAATG 60
||| ||||||||||| || ||||||||||||||||||| |||||||| || |||||||||
Sbjct 1 TCTCAAACAATCACT-ATACTAAATGGAGATGGACTCACAAGAAACTCAA-CCAATAATG 58
Query 61 AGCTCTTCGCCTCCGGGAAGAATATCTCTCCGGCCGATGACTCTTTCCGACGTCGATGAC 120
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 59 AGCTCTTCGCCTCCGGGAAGAATATCACTCCGGCCAATGACTCTTTCCGACGTCGACGAT 118
Query 121 TACATGGTTTGGGCCACAGATCCTAAAGTGGCTCGATTTTGCACTTGGGAGCCTTGCACG 180
| |||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 119 TTCATGGTTTGGGCCACAGACCCTAAAGTGGCACGCTTTTGCACTTGGGAGCCTTGCACG 178
Query 181 AGCCGAGACGAAGCTATCAAATACATAACCGATCGTGTCCTGACACACCCTTGGCTCCGA 240
||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 179 AGCCGGGACGAAGCAATCAAATACATAACCGATCGTGTCTTGACACACCCTTGGCTCCGA 238
Query 241 GCCATCTGCTTAGAAGACGACCGTCCAATCGGCTACATCTTGATCATGGCGGTTGATAAC 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 239 GCCATCTGCTTAGAAGACGACCGTCCGATCGGCTACATCTTGATCATGGCGGTTGATAAC 298
Query 301 ATCAGAAAAGAGATTGGTTATGTCCTAGCGAGAAAGTATTGGGGAAAAGGGTTTGCCACG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 299 ATCAGAAAAGAGATTGGTTATGTCCTAGCGAGAAAGTATTGGGGAAAAGGGTTTGCAACG 358
Query 361 GAAGCAGTGAGGCTAGTGACCGCGGAGGTATTCGAGGAATTTCCAGAGATTGAAAGGCTT 420
||||| |||||||| ||||| |||||||||||| |||||||||| |||||||| || |||
Sbjct 359 GAAGCGGTGAGGCTGGTGACGGCGGAGGTATTCAAGGAATTTCCGGAGATTGAGAGACTT 418
Query 421 GAGGCACTTGTTGATGTGGACAATGTTGGATCTCAAAGGGTTCTTGAAAAAGTTGGGTTT 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 419 GAGGCACTTGTTGATGTGGACAATGTCGGATCTCAAAGGGTTCTTGAAAAAGTTGGGTTT 478
Query 481 ACTAGAGAAGGTGTGATGAGGAAGTTTATATGTATCAAGGGAAGTGTAAGAGACACTGTT 540
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 479 ACTAGAGAAGGTGTGATGAGGAAGTTTCTATGTATCAAGGGAAGTGTAAGAGACACTGTT 538
Query 541 ATGTTTAGTTTCTTGTCTACTGATACTTTGAAGTAA-TTAATCAACAAAAA-GATT 594
||||||||||||||| |||||||||||||||||||| || ||||||||||| ||||
Sbjct 539 ATGTTTAGTTTCTTGCCTACTGATACTTTGAAGTAAATTGATCAACAAAAAAGATT 594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25999829394
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5